Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 0.0e+00 3976.8 1973 100.0
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 1.8e-269 934.1 1787 37.7
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 5.9e-257 892.5 1823 36.8
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 1.0e-256 891.7 1787 37.3
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 2.2e-256 890.6 1810 36.5
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 6.1e-246 855.9 1804 36.3
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 2.3e-245 854.0 1796 36.0
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 7.5e-244 849.0 1810 35.6
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 4.4e-236 823.2 1794 34.7
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 3.1e-226 790.4 1775 33.7
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 4.4e-220 770.0 1814 33.6
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 1.5e-212 745.0 1784 33.9
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 5.8e-212 743.0 1809 32.2
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 2.2e-211 741.1 1804 32.3
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 1.6e-209 734.9 1815 33.1
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 2.3e-208 731.1 1811 33.2
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 6.6e-208 729.6 1809 33.0
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 1.9e-207 728.0 1698 33.8
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.7e-203 714.9 1797 32.9
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.9e-202 711.4 1791 32.9
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 2.4e-202 711.1 1863 32.3
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 6.0e-201 706.4 1795 32.6
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 1.0e-200 705.7 1788 32.6
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 3.0e-200 704.1 1797 32.6
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 3.9e-200 703.7 1474 34.7
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 1.1e-197 695.7 1726 33.4
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 1.2e-196 692.2 1794 32.2
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 1.2e-196 692.2 1794 32.2
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 2.0e-196 691.4 1776 31.6
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 3.5e-193 680.6 1800 31.7
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 1.7e-192 678.3 1798 32.8
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 2.3e-192 677.9 1746 32.7
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 5.1e-192 676.8 1799 31.9
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 1.5e-191 675.2 1794 31.4
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.9e-191 674.9 1704 32.2
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 1.9e-191 674.9 1773 31.4
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 1.4e-189 668.7 1785 30.5
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 8.9e-189 666.0 1778 30.9
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 5.4e-186 656.8 1797 30.9
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 3.5e-185 654.1 1365 34.0
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 6.0e-185 653.3 1796 30.6
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 7.8e-185 652.9 1801 30.7
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 1.5e-183 648.7 1769 30.9
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 2.8e-182 644.4 1784 29.7
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 2.3e-176 624.8 1835 31.1
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 2.0e-172 611.7 1309 34.5
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 1.4e-170 605.5 1355 33.0
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 1.6e-169 602.1 1712 31.1
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 1.6e-169 602.1 1423 31.1
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 8.1e-166 589.7 1674 29.8
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 4.9e-163 580.5 2025 28.2
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 2.5e-162 578.2 1779 29.7
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 1.8e-160 572.0 1757 29.5
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 1.1e-157 562.8 1722 31.0
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 1.4e-157 562.4 1734 29.8
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 2.4e-157 561.6 1685 30.4
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 6.9e-157 560.1 1615 30.8
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 9.0e-157 559.7 1328 31.9
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 2.6e-156 558.1 1835 29.3
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 4.5e-156 557.4 1738 29.5
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 1.9e-154 552.0 1807 28.7
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 1.9e-154 552.0 1841 28.7
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 2.5e-154 551.6 947 35.3
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 3.2e-154 551.2 1704 30.7
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 9.3e-154 549.7 1777 28.9
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 1.1e-151 542.7 1752 28.5
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 9.7e-151 539.7 1704 29.6
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 2.4e-149 535.0 1603 30.4
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 4.1e-149 534.3 832 38.0
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 1.3e-147 529.3 1755 29.4
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 3.8e-147 527.7 1749 29.4
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 5.0e-147 527.3 1686 30.1
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 1.4e-146 525.8 1723 29.7
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.9e-146 525.4 1492 31.5
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 4.2e-146 524.2 1703 29.4
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 4.2e-146 524.2 1728 28.8
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 6.1e-145 520.4 1782 28.4
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 3.0e-144 518.1 1809 28.7
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 6.7e-144 516.9 1703 29.1
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 2.6e-143 515.0 1690 29.9
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 2.6e-143 515.0 1312 31.5
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 2.8e-142 511.5 1727 27.5
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 1.8e-141 508.8 1696 29.4
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 2.4e-141 508.4 1760 29.7
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 8.5e-139 500.0 804 38.1
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 4.2e-138 497.7 1682 28.5
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 6.7e-136 490.3 649 43.3
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 4.8e-134 484.2 1646 27.7
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 9.1e-133 479.9 654 41.3
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 6.1e-121 440.7 726 38.6
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.5e-119 436.0 1391 28.0
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 1.5e-111 409.5 1706 27.2
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 2.3e-99 369.0 1690 26.0
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 3.3e-98 365.2 1314 26.9
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 7.5e-87 327.4 1349 27.8
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 4.3e-82 311.6 653 32.5
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 9.5e-82 310.5 948 26.9
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 3.6e-73 282.0 444 38.1
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 2.6e-71 275.8 1103 29.2
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 1.4e-61 243.4 543 32.4
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 7.6e-55 221.1 1191 26.4
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 4.0e-48 198.7 466 30.0
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 1.3e-43 183.7 664 25.6
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 6.3e-41 174.9 544 26.3
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 2.9e-38 166.0 767 27.9
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 5.0e-38 165.2 621 27.9
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 1.4e-37 163.7 973 22.1
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 1.5e-34 153.7 556 28.6
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 8.2e-33 147.9 624 25.0
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 5.7e-26 125.2 543 28.9
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 7.4e-26 124.8 627 22.5
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.5e-23 117.1 780 25.6
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 2.6e-23 116.3 134 41.8
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 8.8e-19 101.3 137 37.2
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 2.0e-15 90.1 328 29.3
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 1.0e-14 87.8 234 36.8
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 2.5e-13 83.2 288 28.5
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 8.8e-11 74.7 280 28.9
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 8.8e-11 74.7 315 27.9
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 3.3e-10 72.8 54 68.5
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 1.4e-08 67.4 265 29.1
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 9.1e-08 64.7 154 37.0
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.2e-07 64.3 98 34.7
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 6.5e-06 58.5 101 31.7


User provided reference genes

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