Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 6.7e-63 243.8 120 100.0
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 2.4e-28 129.0 104 67.3
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 2.4e-28 129.0 104 66.3
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 4.1e-28 128.3 104 67.3
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 9.1e-28 127.1 104 62.5
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.6e-27 126.3 90 71.1
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.6e-27 126.3 90 71.1
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.6e-27 126.3 90 71.1
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.6e-27 125.6 91 70.3
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 2.6e-27 125.6 101 67.3
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 3.5e-27 125.2 104 62.5
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 4.5e-27 124.8 104 64.4
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 7.7e-27 124.0 104 63.5
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 7.7e-27 124.0 90 71.1
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 7.7e-27 124.0 104 62.5
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 1.0e-26 123.6 104 63.5
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 1.3e-26 123.2 104 62.5
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 1.7e-26 122.9 104 62.5
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 1.7e-26 122.9 92 70.7
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.7e-26 122.9 91 69.2
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.7e-26 122.9 104 61.5
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.7e-26 122.9 104 61.5
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 2.2e-26 122.5 105 61.9
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 2.9e-26 122.1 104 61.5
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 3.8e-26 121.7 90 67.8
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 3.8e-26 121.7 106 62.3
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.8e-26 121.7 90 68.9
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 3.8e-26 121.7 94 68.1
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 3.8e-26 121.7 99 63.6
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 3.8e-26 121.7 104 61.5
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.0e-26 121.3 101 64.4
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 5.0e-26 121.3 104 62.5
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 5.0e-26 121.3 104 62.5
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 5.0e-26 121.3 104 61.5
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 6.5e-26 120.9 90 68.9
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 8.5e-26 120.6 104 60.6
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 8.5e-26 120.6 90 70.0
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 8.5e-26 120.6 87 72.4
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 8.5e-26 120.6 90 67.8
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 1.1e-25 120.2 104 59.6
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 1.5e-25 119.8 90 67.8
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 1.5e-25 119.8 104 60.6
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 1.5e-25 119.8 104 60.6
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.5e-25 119.8 101 63.4
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 1.5e-25 119.8 104 60.6
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 1.9e-25 119.4 90 67.8
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 2.5e-25 119.0 101 66.3
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 2.5e-25 119.0 89 68.5
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 2.5e-25 119.0 90 70.0
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 3.2e-25 118.6 90 67.8
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 3.2e-25 118.6 90 66.7
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 4.2e-25 118.2 101 62.4
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 5.5e-25 117.9 101 62.4
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 5.5e-25 117.9 90 67.8
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 5.5e-25 117.9 104 60.6
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 7.2e-25 117.5 104 60.6
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 7.2e-25 117.5 90 66.7
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 1.6e-24 116.3 90 65.6
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 1.6e-24 116.3 104 60.6
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 1.6e-24 116.3 104 58.7
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 1.6e-24 116.3 90 66.7
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 2.1e-24 115.9 86 69.8
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 2.1e-24 115.9 113 55.8
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 3.6e-24 115.2 104 61.5
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 3.6e-24 115.2 90 65.6
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 6.1e-24 114.4 104 57.7
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 6.1e-24 114.4 104 58.7
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 8.0e-24 114.0 104 59.6
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 8.0e-24 114.0 90 65.6
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 8.0e-24 114.0 104 58.7
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 1.0e-23 113.6 103 59.2
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 1.4e-23 113.2 104 59.6
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 1.8e-23 112.8 104 57.7
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 2.3e-23 112.5 104 58.7
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 3.0e-23 112.1 101 60.4
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 4.0e-23 111.7 101 59.4
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 5.2e-23 111.3 104 58.7
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 5.2e-23 111.3 104 58.7
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 5.2e-23 111.3 90 61.1
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 5.2e-23 111.3 92 62.0
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 5.2e-23 111.3 87 64.4
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 5.2e-23 111.3 87 64.4
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 5.2e-23 111.3 87 64.4
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 8.8e-23 110.5 104 55.8
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 8.8e-23 110.5 104 55.8
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 8.8e-23 110.5 90 62.2
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 8.8e-23 110.5 90 62.2
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 8.8e-23 110.5 104 56.7
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 8.8e-23 110.5 104 55.8
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 1.2e-22 110.2 104 55.8
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.5e-22 109.8 90 61.1
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 1.5e-22 109.8 87 63.2
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 1.5e-22 109.8 87 65.5
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 2.6e-22 109.0 87 62.1
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 4.4e-22 108.2 116 50.9
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 4.4e-22 108.2 105 57.1
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 9.7e-22 107.1 101 57.4
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 1.7e-21 106.3 101 55.4
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 2.8e-21 105.5 101 55.4
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 4.8e-21 104.8 104 55.8
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 6.3e-21 104.4 103 53.4
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 8.3e-21 104.0 100 56.0
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 1.1e-20 103.6 87 60.9
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 1.1e-20 103.6 103 52.4
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 4.1e-20 101.7 90 57.8
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 7.0e-20 100.9 87 58.6
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 2.7e-19 99.0 87 59.8
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 2.7e-19 99.0 90 53.3
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 6.5e-18 94.4 90 54.4
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.9e-17 92.8 83 59.0
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 4.2e-17 91.7 88 48.9
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 1.2e-14 83.6 102 45.1
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 2.8e-13 79.0 89 51.7
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 3.5e-11 72.0 95 43.2
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 2.9e-10 68.9 70 55.7
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 3.8e-10 68.6 39 79.5
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.1e-09 67.0 39 74.4
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 1.2e-08 63.5 90 46.7
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 1.0e-07 60.5 89 38.2
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 1.0e-07 60.5 36 80.6
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 2.3e-07 59.3 88 45.5
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 8.9e-07 57.4 38 68.4
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 5.7e-06 54.7 33 72.7


User provided reference genes

Program Settings