Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI22466 Sapria himalayana HOM05D003622 ORTHO05D004453 0.0e+00 1360.5 710 100.0
Manes.14G116100 Manihot esculenta HOM05D003622 ORTHO05D004453 7.2e-157 558.5 663 52.8
Manes.06G047000 Manihot esculenta HOM05D003622 ORTHO05D004453 1.2e-154 551.2 663 52.2
Sabra06G0047800 Salix brachista HOM05D003622 ORTHO05D004453 8.6e-150 535.0 663 50.1
Potri.018G126100 Populus trichocarpa HOM05D003622 ORTHO05D004453 2.1e-148 530.4 663 51.0
Sabra18G0107100 Salix brachista HOM05D003622 ORTHO05D004453 8.9e-147 525.0 666 50.6
Potri.006G065600 Populus trichocarpa HOM05D003622 ORTHO05D004453 1.3e-145 521.2 663 49.5
Atru.chr7.1951 Acer truncatum HOM05D003622 ORTHO05D004453 1.5e-141 507.7 682 49.3
QL02p089888 Quercus lobata HOM05D003622 ORTHO05D004453 3.4e-138 496.5 665 48.4
Medtr4g115350 Medicago truncatula HOM05D003622 ORTHO05D004453 1.1e-136 491.5 664 48.3
Cfa003424 Carpinus fangiana HOM05D003622 ORTHO05D004453 9.2e-136 488.4 666 47.7
Phvul.003G169000 Phaseolus vulgaris HOM05D003622 ORTHO05D004453 2.7e-135 486.9 664 47.9
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 3.5e-135 486.5 665 46.8
VMungo1215G2226 Vigna mungo HOM05D003622 ORTHO05D004453 1.0e-134 485.0 664 47.6
Cpa.g.sc46.43 Carica papaya HOM05D003622 ORTHO05D004453 3.0e-134 483.4 665 47.8
Glyma.17G111200 Glycine max HOM05D003622 ORTHO05D004453 1.1e-133 481.5 664 47.4
TWI34G1661 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 1.1e-133 481.5 668 47.2
Duzib168G1318 Durio zibethinus HOM05D003622 ORTHO05D004453 1.5e-133 481.1 663 48.1
Ciclev10007427m.g Citrus clementina HOM05D003622 ORTHO05D004453 1.9e-133 480.7 662 47.9
Glyma.13G160300 Glycine max HOM05D003622 ORTHO05D004453 4.3e-133 479.6 664 47.0
Lj4g0015305 Lotus japonicus HOM05D003622 ORTHO05D004453 4.3e-133 479.6 666 48.0
Gohir.A08G088500 Gossypium hirsutum HOM05D003622 ORTHO05D004453 7.3e-133 478.8 663 48.1
Ca_06943_v3 Cicer arietinum L. HOM05D003622 ORTHO05D004453 6.2e-132 475.7 665 48.1
Gorai.013G235300 Gossypium raimondii HOM05D003622 ORTHO05D004453 8.1e-132 475.3 677 47.6
Duzib187G1700 Durio zibethinus HOM05D003622 ORTHO05D004453 1.1e-131 474.9 660 47.7
Psat0s188g0040 Pisum sativum HOM05D003622 ORTHO05D004453 2.0e-130 470.7 667 47.8
Lalb_Chr13g0301561 Lupinus albus HOM05D003622 ORTHO05D004453 2.6e-130 470.3 664 47.0
TWI63G1810 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 5.8e-130 469.2 667 47.2
Dinv36478 Davidia involucrata HOM05D003622 ORTHO05D004453 7.5e-130 468.8 659 46.0
Gorai.010G061100 Gossypium raimondii HOM05D003622 ORTHO05D004453 9.9e-130 468.4 669 47.2
Gohir.D08G099700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.7e-129 467.6 650 48.0
Gorai.004G107500 Gossypium raimondii HOM05D003622 ORTHO05D004453 1.7e-129 467.6 663 47.4
Lalb_Chr12g0198231 Lupinus albus HOM05D003622 ORTHO05D004453 2.2e-129 467.2 664 47.1
TWI32G0590 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 3.7e-129 466.5 663 47.8
Gohir.A06G053800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.4e-128 464.5 669 47.1
Thecc.09G132400 Theobroma cacao HOM05D003622 ORTHO05D004453 1.4e-128 464.5 661 47.2
arahy.Tifrunner.gnm1.ann1.HD4WN1 Arachis hypogaea HOM05D003622 ORTHO05D004453 1.9e-128 464.2 666 45.3
CiPaw.03G248700 Carya illinoinensis HOM05D003622 ORTHO05D004453 2.4e-128 463.8 676 46.3
COL.COLO4_35161 Corchorus olitorius HOM05D003622 ORTHO05D004453 3.2e-128 463.4 676 47.2
arahy.Tifrunner.gnm1.ann1.DJE2D0 Arachis hypogaea HOM05D003622 ORTHO05D004453 4.1e-128 463.0 664 45.8
CiPaw.04G174900 Carya illinoinensis HOM05D003622 ORTHO05D004453 5.4e-128 462.6 654 46.5
MELO3C010313.2 Cucumis melo HOM05D003622 ORTHO05D004453 5.4e-128 462.6 660 45.8
GSVIVG01015594001 Vitis vinifera HOM05D003622 ORTHO05D004453 2.7e-127 460.3 664 46.1
CsaV3_1G026740 Cucumis sativus L. HOM05D003622 ORTHO05D004453 4.6e-127 459.5 662 45.6
Gohir.D06G052700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 4.6e-127 459.5 669 46.6
MD02G1023300 Malus domestica HOM05D003622 ORTHO05D004453 1.7e-126 457.6 684 45.9
TPR.G24803 Trifolium pratense HOM05D003622 ORTHO05D004453 1.7e-126 457.6 667 46.5
Gohir.A13G200800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 6.2e-124 449.1 670 45.2
MD15G1166400 Malus domestica HOM05D003622 ORTHO05D004453 8.1e-124 448.7 665 46.3
CSS0022552 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 3.1e-123 446.8 687 44.4
CANSAT11G0379 Cannabis sativa HOM05D003622 ORTHO05D004453 3.1e-123 446.8 671 45.0
Actinidia21950 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.5e-122 444.5 691 43.0
TAR625G0175 Trochodendron aralioides HOM05D003622 ORTHO05D004453 1.5e-122 444.5 687 44.5
vmacro07722 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 1.5e-122 444.5 684 44.6
Sed0001481 Sechium edule HOM05D003622 ORTHO05D004453 3.4e-122 443.4 658 43.6
CSS0042071 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 5.8e-122 442.6 656 43.9
FAN26G1654 Fragaria x ananassa HOM05D003622 ORTHO05D004453 5.8e-122 442.6 673 45.2
FvH4_1g02580 Fragaria vesca HOM05D003622 ORTHO05D004453 7.6e-122 442.2 673 44.9
FAN23G2517 Fragaria x ananassa HOM05D003622 ORTHO05D004453 7.6e-122 442.2 674 45.0
FAN28G0611 Fragaria x ananassa HOM05D003622 ORTHO05D004453 9.9e-122 441.8 663 45.1
CSS0014966 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 1.3e-121 441.4 661 44.8
Lalb_Chr11g0072261 Lupinus albus HOM05D003622 ORTHO05D004453 1.3e-121 441.4 684 43.7
FAN19G0217 Fragaria x ananassa HOM05D003622 ORTHO05D004453 1.7e-121 441.0 673 44.7
Prupe.7G248800 Prunus persica HOM05D003622 ORTHO05D004453 2.9e-121 440.3 667 45.3
RcHm_v2.0_Chr2g0087611 Rosa chinensis HOM05D003622 ORTHO05D004453 4.9e-121 439.5 663 45.4
EL10Ac8g18721 Beta vulgaris HOM05D003622 ORTHO05D004453 4.1e-120 436.4 659 43.2
Ah.09g224810 Amaranthus hybridus HOM05D003622 ORTHO05D004453 9.2e-120 435.3 656 43.3
Lalb_Chr07g0179261 Lupinus albus HOM05D003622 ORTHO05D004453 4.6e-119 433.0 662 44.1
ClCG06G011530 Citrullus lanatus HOM05D003622 ORTHO05D004453 6.0e-119 432.6 681 43.9
Sc08g0006260 Simmondsia chinensis HOM05D003622 ORTHO05D004453 7.8e-119 432.2 675 44.9
Hma1.2p1_0343F.1_g130930 Hydrangea macrophylla HOM05D003622 ORTHO05D004453 1.7e-118 431.0 654 42.8
Sopen07g003790 Solanum pennellii HOM05D003622 ORTHO05D004453 8.7e-118 428.7 665 42.7
Hund26549 Selenicereus undatus HOM05D003622 ORTHO05D004453 1.1e-117 428.3 670 42.5
Oeu056946.1 Olea europaea HOM05D003622 ORTHO05D004453 5.6e-117 426.0 664 43.2
Solyc07g007890.3 Solanum lycopersicum HOM05D003622 ORTHO05D004453 7.3e-117 425.6 665 42.6
PSO017G7291 Papaver somniferum HOM05D003622 ORTHO05D004453 1.6e-116 424.5 660 43.5
CAN.G1266.4 Capsicum annuum HOM05D003622 ORTHO05D004453 2.1e-116 424.1 673 42.6
Hund09284 Selenicereus undatus HOM05D003622 ORTHO05D004453 2.1e-116 424.1 659 42.6
TAR636G0579 Trochodendron aralioides HOM05D003622 ORTHO05D004453 2.8e-116 423.7 605 45.6
Aqoxy7G03634 Aquilegia oxysepala HOM05D003622 ORTHO05D004453 6.2e-116 422.5 664 43.7
Sed0008371 Sechium edule HOM05D003622 ORTHO05D004453 1.4e-115 421.4 658 43.5
PSO170G2238 Papaver somniferum HOM05D003622 ORTHO05D004453 9.0e-115 418.7 659 43.4
Rhsim01G0061400 Rhododendron simsii HOM05D003622 ORTHO05D004453 1.5e-114 417.9 673 43.1
Peaxi162Scf00088g01327 Petunia axillaris HOM05D003622 ORTHO05D004453 2.0e-114 417.5 672 42.3
PGSC0003DMG400030907 Solanum tuberosum HOM05D003622 ORTHO05D004453 2.6e-114 417.2 665 41.7
Nitab4.5_0002008g0030 Nicotiana tabacum HOM05D003622 ORTHO05D004453 4.4e-114 416.4 673 41.8
Nitab4.5_0003393g0070 Nicotiana tabacum HOM05D003622 ORTHO05D004453 4.4e-114 416.4 673 41.9
AUR62011177 Chenopodium quinoa HOM05D003622 ORTHO05D004453 1.7e-113 414.5 670 42.1
AUR62013307 Chenopodium quinoa HOM05D003622 ORTHO05D004453 1.7e-113 414.5 668 42.7
SGA_v2.0_scaffold63G21826 Striga asiatica HOM05D003622 ORTHO05D004453 1.7e-113 414.5 666 42.3
vmacro06154 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 6.4e-113 412.5 652 43.4
Oeu052762.1 Olea europaea HOM05D003622 ORTHO05D004453 1.6e-111 407.9 654 41.7
Eucgr.C01387 Eucalyptus grandis HOM05D003622 ORTHO05D004453 2.7e-111 407.1 662 43.5
SalBow1G3694 Salvia bowleyana HOM05D003622 ORTHO05D004453 6.6e-110 402.5 677 41.2
Rhsim03G0251600 Rhododendron simsii HOM05D003622 ORTHO05D004453 8.7e-110 402.1 657 42.8
Actinidia07317 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.9e-109 401.0 677 40.3
MSTRG.26437 Avicennia marina HOM05D003622 ORTHO05D004453 1.9e-109 401.0 666 41.1
MBI13_g37002_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 1.9e-109 401.0 657 41.2
SalBow6G3081 Salvia bowleyana HOM05D003622 ORTHO05D004453 2.6e-106 390.6 659 41.7
THA.LOC104808966 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 7.6e-106 389.0 669 42.0
SGA_v2.0_scaffold464G52002 Striga asiatica HOM05D003622 ORTHO05D004453 1.1e-104 385.2 654 41.1
DCAR_020889 Daucus carota HOM05D003622 ORTHO05D004453 1.4e-104 384.8 675 40.9
ATR0800G088 Amborella trichopoda HOM05D003622 ORTHO05D004453 4.2e-104 383.3 660 40.9
PGR102G2297 Punica granatum HOM05D003622 ORTHO05D004453 5.4e-104 382.9 662 41.8
DCAR_009323 Daucus carota HOM05D003622 ORTHO05D004453 9.3e-104 382.1 688 41.0
Migut.J01215 Erythranthe guttata HOM05D003622 ORTHO05D004453 2.7e-103 380.6 666 40.8
Thhalv10003437m.g Eutrema salsugineum HOM05D003622 ORTHO05D004453 2.7e-103 380.6 655 40.6
BcaB06g26937 Brassica carinata HOM05D003622 ORTHO05D004453 1.3e-102 378.3 662 40.0
Migut.K00423 Erythranthe guttata HOM05D003622 ORTHO05D004453 3.9e-102 376.7 665 40.2
C04p43220 Brassica napus HOM05D003622 ORTHO05D004453 5.1e-102 376.3 660 39.5
A04p09700 Brassica napus HOM05D003622 ORTHO05D004453 1.5e-101 374.8 660 39.4
THA.LOC104826553 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 2.1e-100 370.9 667 41.2
Cc06_g08050 Coffea canephora HOM05D003622 ORTHO05D004453 6.2e-100 369.4 640 41.6
Sp7g06890 Schrenkiella parvula HOM05D003622 ORTHO05D004453 6.2e-100 369.4 661 39.6
CDE03G0113 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 1.8e-99 367.9 660 38.5
AL7G44290 Arabidopsis lyrata HOM05D003622 ORTHO05D004453 2.4e-99 367.5 660 39.4
BcaB02g08053 Brassica carinata HOM05D003622 ORTHO05D004453 9.0e-99 365.5 662 40.3
Lj7C432T7 Lonicera japonica HOM05D003622 ORTHO05D004453 3.4e-98 363.6 655 39.7
CARHR217470 Cardamine hirsuta HOM05D003622 ORTHO05D004453 4.5e-98 363.2 656 39.2
AT5G35430 Arabidopsis thaliana HOM05D003622 ORTHO05D004453 1.4e-96 358.2 660 39.2
Carub.0007s3125 Capsella rubella HOM05D003622 ORTHO05D004453 7.1e-96 355.9 660 39.2
Aa31LG9G18070 Aethionema arabicum HOM05D003622 ORTHO05D004453 9.6e-93 345.5 660 39.7
Lsat_1_v5_gn_5_91841 Lactuca sativa HOM05D003622 ORTHO05D004453 1.8e-91 341.3 655 39.5
HanXRQChr12g0356631 Helianthus annuus HOM05D003622 ORTHO05D004453 1.5e-90 338.2 655 38.0
unitig_0.g2718 Utricularia gibba HOM05D003622 ORTHO05D004453 1.5e-90 338.2 664 37.8
CDE06G0586 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 3.8e-89 333.6 660 37.7
Carub.0001s0938 Capsella rubella HOM05D003622 ORTHO05D004453 8.4e-89 332.4 658 38.3
HanXRQChr10g0315861 Helianthus annuus HOM05D003622 ORTHO05D004453 3.2e-88 330.5 657 38.4
ECA234G4065 Erigeron canadensis HOM05D003622 ORTHO05D004453 3.5e-87 327.0 663 37.4
SEGI_29075 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 9.7e-85 318.9 683 37.2
Gohir.D13G206400 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.6e-84 318.2 666 38.4
Nn2g12120 Nelumbo nucifera HOM05D003622 ORTHO05D004453 1.0e-81 308.9 486 44.0
Duzib150G0473 Durio zibethinus HOM05D003622 ORTHO05D004453 2.5e-77 294.3 652 37.0
Os09g0123100 Oryza sativa ssp. japonica HOM05D003622 ORTHO05D004453 1.1e-72 278.9 652 35.6
Zm00001eb095440 Zea mays HOM05D003622 ORTHO05D004453 2.0e-69 268.1 653 33.5
unitig_748.g7167 Utricularia gibba HOM05D003622 ORTHO05D004453 2.8e-68 264.2 471 38.2
Mapoly0024s0101 Marchantia polymorpha HOM05D003622 ORTHO05D004453 2.0e-66 258.1 678 31.0
Zm00001eb308130 Zea mays HOM05D003622 ORTHO05D004453 5.9e-66 256.5 661 33.0
CSS0037660 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 2.7e-63 247.7 459 37.9
BcaC02g09474 Brassica carinata HOM05D003622 ORTHO05D004453 8.0e-63 246.1 663 33.5
HPP92_000465 Vanilla planifolia HOM05D003622 ORTHO05D004453 8.0e-63 246.1 374 43.9
BcaC02g09475 Brassica carinata HOM05D003622 ORTHO05D004453 4.4e-61 240.4 404 38.4
Oeu055962.1 Olea europaea HOM05D003622 ORTHO05D004453 4.8e-60 236.9 615 33.3
BolC4t25899H Brassica oleracea HOM05D003622 ORTHO05D004453 1.6e-58 231.9 373 43.2
SMO351G0297 Selaginella moellendorffii HOM05D003622 ORTHO05D004453 3.5e-58 230.7 662 30.1
BraA04t16629Z Brassica rapa HOM05D003622 ORTHO05D004453 7.7e-58 229.6 373 42.9
Pp3c15_17690 Physcomitrium patens HOM05D003622 ORTHO05D004453 1.6e-55 221.9 688 30.1
Pp3c9_20660 Physcomitrium patens HOM05D003622 ORTHO05D004453 9.7e-53 212.6 687 28.7
CBR_g27935 Chara braunii HOM05D000019 ORTHO05D000048 8.3e-44 183.0 679 27.4
Oeu052177.3 Olea europaea HOM05D003622 ORTHO05D004453 1.2e-34 152.5 666 27.0
SEGI_39442 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.6e-31 142.1 329 34.0
TAR383G0647 Trochodendron aralioides HOM05D003622 ORTHO05D004453 3.4e-29 134.4 190 43.7
Actinidia38718 Actinidia chinensis HOM05D003622 ORTHO05D004453 7.8e-26 123.2 154 46.8
MBI13_g36807_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 2.1e-23 115.2 113 54.0
MBI13_g02370_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 2.3e-22 111.7 270 36.3
HPP92_000473 Vanilla planifolia HOM05D003622 ORTHO05D004453 7.5e-21 106.7 133 43.6
AagrBONN_evm.TU.Sc2ySwM_344.2256 Anthoceros agrestis HOM05D003622 ORTHO05D004453 3.2e-19 101.3 315 27.3
unitig_748.g7166 Utricularia gibba HOM05D003622 ORTHO05D004453 1.0e-09 69.7 159 37.7
SEGI_04910 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.9e-08 65.5 158 30.4
MBI13_g36805_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 1.2e-07 62.8 148 37.8


User provided reference genes

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