Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI22375 Sapria himalayana HOM05D000260 ORTHO05D000318 3.5e-29 131.0 66 100.0
SHI22371 Sapria himalayana HOM05D000260 ORTHO05D000318 2.6e-24 114.8 71 84.5
SHI22379 Sapria himalayana HOM05D000260 ORTHO05D000318 9.5e-19 96.3 69 72.5
SHI22383 Sapria himalayana HOM05D000260 ORTHO05D000318 3.6e-18 94.4 71 66.2
SHI22387 Sapria himalayana HOM05D000260 ORTHO05D000318 2.6e-16 88.2 72 62.5
SHI25755 Sapria himalayana HOM05D000260 ORTHO05D000318 5.6e-11 70.5 70 57.1
TAR374G0569 Trochodendron aralioides HOM05D000260 ORTHO05D000318 1.6e-10 68.9 70 54.3
PGR004G2255 Punica granatum HOM05D000260 ORTHO05D000318 2.3e-09 65.1 70 48.6
Dinv34801 Davidia involucrata HOM05D003134 ORTHO05D003500 4.0e-09 64.3 65 53.8
BcaB03g15221 Brassica carinata HOM05D000260 ORTHO05D000318 1.5e-08 62.4 65 52.3
Haze_14182 Corylus avellana HOM05D000260 ORTHO05D000318 1.5e-08 62.4 65 50.8
Hma1.2p1_0075F.1_g039260 Hydrangea macrophylla HOM05D000260 ORTHO05D000318 1.5e-08 62.4 71 46.5
Hma1.2p1_0075F.1_g039270 Hydrangea macrophylla HOM05D000260 ORTHO05D000318 1.5e-08 62.4 71 46.5
Hma1.2p1_0976F.1_g243296 Hydrangea macrophylla HOM05D000260 ORTHO05D000318 1.5e-08 62.4 71 46.5
Hma1.2p1_0976F.1_g243299 Hydrangea macrophylla HOM05D000260 ORTHO05D000318 1.5e-08 62.4 71 46.5
CiPaw.04G043800 Carya illinoinensis HOM05D000260 ORTHO05D000318 2.0e-08 62.0 65 52.3
MBI16_g37131_MAGBIO Magnolia biondii HOM05D000260 ORTHO05D000318 2.0e-08 62.0 71 49.3
vmacro05532 Vaccinium macrocarpon HOM05D000260 ORTHO05D000318 2.6e-08 61.6 67 50.7
Cfa007899 Carpinus fangiana HOM05D000260 ORTHO05D000318 3.4e-08 61.2 65 49.2
Potri.017G118250 Populus trichocarpa HOM05D000260 ORTHO05D000318 3.4e-08 61.2 66 48.5
Lsat_1_v5_gn_4_155900 Lactuca sativa HOM05D000260 ORTHO05D000318 4.4e-08 60.8 65 49.2
Lj2C439T17 Lonicera japonica HOM05D000260 ORTHO05D000318 4.4e-08 60.8 65 50.8
Lj9C529G2 Lonicera japonica HOM05D000260 ORTHO05D000318 4.4e-08 60.8 65 50.8
A02p13800 Brassica napus HOM05D000260 ORTHO05D000318 5.8e-08 60.5 66 48.5
ECA232G1450 Erigeron canadensis HOM05D002670 ORTHO05D000318 5.8e-08 60.5 65 49.2
BcaB05g24202 Brassica carinata HOM05D000260 ORTHO05D000318 7.5e-08 60.1 66 48.5
BcaC03g14769 Brassica carinata HOM05D000260 ORTHO05D000318 7.5e-08 60.1 66 48.5
C02p22180 Brassica napus HOM05D000260 ORTHO05D000318 7.5e-08 60.1 66 48.5
BolC2t08352H Brassica oleracea HOM05D000260 ORTHO05D000318 7.5e-08 60.1 66 48.5
HanXRQChr11g0325091 Helianthus annuus HOM05D000260 ORTHO05D000318 7.5e-08 60.1 65 49.2
SHI22396 Sapria himalayana HOM05D000260 ORTHO05D000318 9.8e-08 59.7 71 45.1
Actinidia36337 Actinidia chinensis HOM05D000260 ORTHO05D000318 1.3e-07 59.3 65 47.7
CARHR059020 Cardamine hirsuta HOM05D000260 ORTHO05D000318 1.3e-07 59.3 68 47.1
SHI22392 Sapria himalayana HOM05D000260 ORTHO05D000318 1.3e-07 59.3 68 45.6
THA.LOC104805581 Tarenaya hassleriana HOM05D000260 ORTHO05D000318 1.3e-07 59.3 67 44.8
CSS0016791 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 1.7e-07 58.9 72 47.2
Eucgr.J01515 Eucalyptus grandis HOM05D000260 ORTHO05D000318 2.2e-07 58.5 65 49.2
Gohir.A11G165500 Gossypium hirsutum HOM05D000260 ORTHO05D000318 2.2e-07 58.5 64 48.4
Potri.004G097100 Populus trichocarpa HOM05D000260 ORTHO05D000318 2.2e-07 58.5 66 45.5
Sc06g0006900 Simmondsia chinensis HOM05D000260 ORTHO05D000318 2.2e-07 58.5 70 45.7
Lsat_1_v5_gn_4_155840 Lactuca sativa HOM05D000260 ORTHO05D000318 2.9e-07 58.2 65 46.2
Manes.01G112300 Manihot esculenta HOM05D000260 ORTHO05D000318 2.9e-07 58.2 66 45.5
Potri.004G096550 Populus trichocarpa HOM05D000260 ORTHO05D000318 2.9e-07 58.2 66 45.5
Potri.004G096900 Populus trichocarpa HOM05D000260 ORTHO05D000318 2.9e-07 58.2 66 45.5
A07p33700 Brassica napus HOM05D000260 ORTHO05D000318 3.7e-07 57.8 65 47.7
A09p28010 Brassica napus HOM05D000260 ORTHO05D000318 3.7e-07 57.8 68 44.1
BraA07t30997Z Brassica rapa HOM05D000260 ORTHO05D000318 3.7e-07 57.8 65 47.7
Duzib138G0276 Durio zibethinus HOM05D000260 ORTHO05D000318 3.7e-07 57.8 64 46.9
Rhsim10G0069600 Rhododendron simsii HOM05D000260 ORTHO05D000318 3.7e-07 57.8 67 46.3
SalBow3G2949 Salvia bowleyana HOM05D000260 ORTHO05D000318 3.7e-07 57.8 65 47.7
VMungo0464G2124 Vigna mungo HOM05D000260 ORTHO05D000318 3.7e-07 57.8 65 50.8
Zm00001eb335470 Zea mays HOM05D000260 ORTHO05D000318 3.7e-07 57.8 64 46.9
Aa31LG9G17180 Aethionema arabicum HOM05D000260 ORTHO05D000318 4.9e-07 57.4 68 41.2
BcaB03g15223 Brassica carinata HOM05D000260 ORTHO05D000318 4.9e-07 57.4 65 46.2
BcaC08g46125 Brassica carinata HOM05D000260 ORTHO05D000318 4.9e-07 57.4 66 45.5
A07p33670 Brassica napus HOM05D000260 ORTHO05D000318 4.9e-07 57.4 66 45.5
A07p33690 Brassica napus HOM05D000260 ORTHO05D000318 4.9e-07 57.4 65 46.2
C06p40230 Brassica napus HOM05D000260 ORTHO05D000318 4.9e-07 57.4 66 45.5
BolC6t39109H Brassica oleracea HOM05D000260 ORTHO05D000318 4.9e-07 57.4 66 45.5
BraA07t30994Z Brassica rapa HOM05D000260 ORTHO05D000318 4.9e-07 57.4 66 45.5
BraA07t30996Z Brassica rapa HOM05D000260 ORTHO05D000318 4.9e-07 57.4 65 46.2
Duzib133G1450 Durio zibethinus HOM05D000260 ORTHO05D000318 4.9e-07 57.4 65 44.6
Lalb_Chr10g0096441 Lupinus albus HOM05D000260 ORTHO05D000318 4.9e-07 57.4 70 45.7
Os01g0136400 Oryza sativa ssp. japonica HOM05D000260 ORTHO05D000318 4.9e-07 57.4 64 43.8
TPR.G36593 Trifolium pratense HOM05D000260 ORTHO05D000318 4.9e-07 57.4 70 45.7
TWI77G0678 Tripterygium wilfordii HOM05D000260 ORTHO05D000318 4.9e-07 57.4 66 47.0
vmacro18067 Vaccinium macrocarpon HOM05D000260 ORTHO05D000318 4.9e-07 57.4 64 50.0
MSTRG.3542 Avicennia marina HOM05D000260 ORTHO05D000318 6.4e-07 57.0 65 47.7
BcaC08g46124 Brassica carinata HOM05D000260 ORTHO05D000318 6.4e-07 57.0 65 46.2
C06p40250 Brassica napus HOM05D000260 ORTHO05D000318 6.4e-07 57.0 65 46.2
CANSAT78G1831 Cannabis sativa HOM05D000260 ORTHO05D000318 6.4e-07 57.0 66 43.9
Eucgr.F02517 Eucalyptus grandis HOM05D000260 ORTHO05D000318 6.4e-07 57.0 65 47.7
Lj4A190G73 Lonicera japonica HOM05D000260 ORTHO05D000318 6.4e-07 57.0 65 49.2
Sabra17G0097200 Salix brachista HOM05D000260 ORTHO05D000318 6.4e-07 57.0 65 43.1
Actinidia15897 Actinidia chinensis HOM05D000260 ORTHO05D000318 8.3e-07 56.6 65 46.2
AL2G25130 Arabidopsis lyrata HOM05D000260 ORTHO05D000318 8.3e-07 56.6 68 41.2
Ciclev10011179m.g Citrus clementina HOM05D000260 ORTHO05D000318 8.3e-07 56.6 66 45.5
Gohir.D09G172100 Gossypium hirsutum HOM05D000260 ORTHO05D000318 8.3e-07 56.6 71 45.1
Gorai.006G194000 Gossypium raimondii HOM05D000260 ORTHO05D000318 8.3e-07 56.6 71 45.1
Manes.02G070600 Manihot esculenta HOM05D000260 ORTHO05D000318 8.3e-07 56.6 72 41.7
Medtr1g110130 Medicago truncatula HOM05D000260 ORTHO05D000318 8.3e-07 56.6 70 47.1
Potri.017G118100 Populus trichocarpa HOM05D000260 ORTHO05D000318 8.3e-07 56.6 66 45.5
SalBow5G4438 Salvia bowleyana HOM05D000260 ORTHO05D000318 8.3e-07 56.6 65 44.6
MSTRG.15307 Avicennia marina HOM05D000260 ORTHO05D000318 1.1e-06 56.2 65 46.2
C09p35510 Brassica napus HOM05D000260 ORTHO05D000318 1.1e-06 56.2 65 46.2
BolC9t56390H Brassica oleracea HOM05D000260 ORTHO05D000318 1.1e-06 56.2 65 46.2
CANSAT80G1376 Cannabis sativa HOM05D000260 ORTHO05D000318 1.1e-06 56.2 63 49.2
CDE06G0453 Ceratophyllum demersum HOM05D000260 ORTHO05D000318 1.1e-06 56.2 62 48.4
Gohir.A09G176400 Gossypium hirsutum HOM05D000260 ORTHO05D000318 1.1e-06 56.2 71 45.1
HanXRQChr11g0330691 Helianthus annuus HOM05D000260 ORTHO05D000318 1.1e-06 56.2 65 44.6
Lj1g0010679 Lotus japonicus HOM05D000260 ORTHO05D000318 1.1e-06 56.2 71 49.3
QL02p049624 Quercus lobata HOM05D000260 ORTHO05D000318 1.1e-06 56.2 65 46.2
Sc11g0008460 Simmondsia chinensis HOM05D000260 ORTHO05D000318 1.1e-06 56.2 65 43.1
Thecc.04G129700 Theobroma cacao HOM05D000260 ORTHO05D000318 1.1e-06 56.2 65 44.6
TAR371G0687 Trochodendron aralioides HOM05D000260 ORTHO05D000318 1.1e-06 56.2 71 43.7
Zm00001eb124920 Zea mays HOM05D000260 ORTHO05D000318 1.1e-06 56.2 64 46.9
Atru.chr1.1629 Acer truncatum HOM05D000260 ORTHO05D000318 1.4e-06 55.8 65 46.2
Actinidia35096 Actinidia chinensis HOM05D000260 ORTHO05D000318 1.4e-06 55.8 72 44.4
BcaC08g46123 Brassica carinata HOM05D000260 ORTHO05D000318 1.4e-06 55.8 65 46.2
C06p43270 Brassica napus HOM05D000260 ORTHO05D000318 1.4e-06 55.8 65 46.2
BolC6t39112H Brassica oleracea HOM05D000260 ORTHO05D000318 1.4e-06 55.8 65 46.2
CSS0014137 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 1.4e-06 55.8 68 42.6
CSS0021340 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 1.4e-06 55.8 68 42.6
Cc07_g08610 Coffea canephora HOM05D000260 ORTHO05D000318 1.4e-06 55.8 65 44.6
Migut.L00493 Erythranthe guttata HOM05D000260 ORTHO05D000318 1.4e-06 55.8 65 46.2
Gohir.A09G049300 Gossypium hirsutum HOM05D000260 ORTHO05D000318 1.4e-06 55.8 65 49.2
HanXRQChr11g0330701 Helianthus annuus HOM05D000260 ORTHO05D000318 1.4e-06 55.8 65 50.8
Medtr7g082530 Medicago truncatula HOM05D000260 ORTHO05D000318 1.4e-06 55.8 72 38.9
Nn3g17933 Nelumbo nucifera HOM05D000260 ORTHO05D000318 1.4e-06 55.8 67 46.3
Prupe.3G146500 Prunus persica HOM05D000260 ORTHO05D000318 1.4e-06 55.8 65 47.7
Sp5g21870 Schrenkiella parvula HOM05D000260 ORTHO05D000318 1.4e-06 55.8 66 43.9
TWI74G0852 Tripterygium wilfordii HOM05D000260 ORTHO05D000318 1.4e-06 55.8 66 48.5
Actinidia16678 Actinidia chinensis HOM05D000260 ORTHO05D000318 1.9e-06 55.5 63 46.0
arahy.Tifrunner.gnm1.ann1.JH9VB6 Arachis hypogaea HOM05D000260 ORTHO05D000318 1.9e-06 55.5 67 46.3
arahy.Tifrunner.gnm1.ann1.MQ5PPI Arachis hypogaea HOM05D000260 ORTHO05D000318 1.9e-06 55.5 67 46.3
MSTRG.23593 Avicennia marina HOM05D000260 ORTHO05D000318 1.9e-06 55.5 64 46.9
BcaB01g01602 Brassica carinata HOM05D000260 ORTHO05D000318 1.9e-06 55.5 68 45.6
BcaB01g01604 Brassica carinata HOM05D000260 ORTHO05D000318 1.9e-06 55.5 68 45.6
CSS0034875 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 1.9e-06 55.5 65 44.6
CSS0044018 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 1.9e-06 55.5 68 45.6
Hma1.2p1_1024F.1_g249140 Hydrangea macrophylla HOM05D000260 ORTHO05D000318 1.9e-06 55.5 67 46.3
Rhsim12G0085900 Rhododendron simsii HOM05D000260 ORTHO05D000318 1.9e-06 55.5 70 41.4
Sabra15G0040300 Salix brachista HOM05D000260 ORTHO05D000318 1.9e-06 55.5 63 49.2
CSS0009724 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 2.4e-06 55.1 68 42.6
COL.COLO4_09361 Corchorus olitorius HOM05D000260 ORTHO05D000318 2.4e-06 55.1 65 43.1
Gohir.D09G050200 Gossypium hirsutum HOM05D000260 ORTHO05D000318 2.4e-06 55.1 65 49.2
Gohir.D11G171500 Gossypium hirsutum HOM05D000260 ORTHO05D000318 2.4e-06 55.1 63 46.0
Gorai.006G059400 Gossypium raimondii HOM05D000260 ORTHO05D000318 2.4e-06 55.1 65 49.2
Gorai.007G183600 Gossypium raimondii HOM05D000260 ORTHO05D000318 2.4e-06 55.1 63 46.0
Lsat_1_v5_gn_2_81040 Lactuca sativa HOM05D000260 ORTHO05D000318 2.4e-06 55.1 65 47.7
Oeu036852.1 Olea europaea HOM05D000260 ORTHO05D000318 2.4e-06 55.1 65 44.6
TAR433G0006 Trochodendron aralioides HOM05D000260 ORTHO05D000318 2.4e-06 55.1 72 41.7
vmacro01395 Vaccinium macrocarpon HOM05D000260 ORTHO05D000318 2.4e-06 55.1 67 43.3
VMungo0720G0489 Vigna mungo HOM05D000260 ORTHO05D000318 2.4e-06 55.1 68 42.6
BcaB03g15225 Brassica carinata HOM05D000260 ORTHO05D000318 3.2e-06 54.7 65 44.6
BolC6t39111H Brassica oleracea HOM05D000260 ORTHO05D000318 3.2e-06 54.7 65 44.6
BraA02t06438Z Brassica rapa HOM05D000260 ORTHO05D000318 3.2e-06 54.7 59 49.2
CAN.G625.45 Capsicum annuum HOM05D000260 ORTHO05D000318 3.2e-06 54.7 64 42.2
Glyma.09G181600 Glycine max HOM05D000260 ORTHO05D000318 3.2e-06 54.7 65 47.7
HanXRQChr11g0325081 Helianthus annuus HOM05D000260 ORTHO05D000318 3.2e-06 54.7 65 47.7
Oeu030792.1 Olea europaea HOM05D000260 ORTHO05D000318 3.2e-06 54.7 65 46.2
QL02p050597 Quercus lobata HOM05D000260 ORTHO05D000318 3.2e-06 54.7 65 44.6
Sabra17G0097500 Salix brachista HOM05D000260 ORTHO05D000318 3.2e-06 54.7 71 40.8
Sed0014206 Sechium edule HOM05D000260 ORTHO05D000318 3.2e-06 54.7 72 41.7
GSVIVG01008327001 Vitis vinifera HOM05D000260 ORTHO05D000318 3.2e-06 54.7 72 43.1
CiPaw.16G088300 Carya illinoinensis HOM05D000260 ORTHO05D000318 4.1e-06 54.3 64 46.9
Ca_25478_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 4.1e-06 54.3 65 47.7
Ca_29870_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 4.1e-06 54.3 65 47.7
FAN20G1929 Fragaria x ananassa HOM05D000260 ORTHO05D000318 4.1e-06 54.3 65 46.2
QL10p025997 Quercus lobata HOM05D000260 ORTHO05D000318 4.1e-06 54.3 63 50.8
Actinidia18923 Actinidia chinensis HOM05D000260 ORTHO05D000318 5.4e-06 53.9 72 44.4
AT1G66880 Arabidopsis thaliana HOM05D000260 ORTHO05D000318 5.4e-06 53.9 65 41.5
CSS0011658 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 5.4e-06 53.9 68 39.7
CSS0013107 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 5.4e-06 53.9 68 39.7
CSS0049650 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 5.4e-06 53.9 63 49.2
Glyma.18G294800 Glycine max HOM05D000260 ORTHO05D000318 5.4e-06 53.9 65 47.7
Oeu030793.1 Olea europaea HOM05D000260 ORTHO05D000318 5.4e-06 53.9 65 46.2
QL10p026182 Quercus lobata HOM05D000260 ORTHO05D000318 5.4e-06 53.9 63 49.2
Rhsim08G0083400 Rhododendron simsii HOM05D000260 ORTHO05D000318 5.4e-06 53.9 65 46.2
RcHm_v2.0_Chr6g0273041 Rosa chinensis HOM05D000260 ORTHO05D000318 5.4e-06 53.9 65 46.2
Sabra04G0065500 Salix brachista HOM05D000260 ORTHO05D000318 5.4e-06 53.9 66 43.9
Aa31LG2G3340 Aethionema arabicum HOM05D000260 ORTHO05D000318 7.0e-06 53.5 65 43.1
CSS0008828 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 7.0e-06 53.5 62 48.4
CSS0025510 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 7.0e-06 53.5 62 48.4
CSS0032289 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 7.0e-06 53.5 62 48.4
Cpa.g.sc65.58 Carica papaya HOM05D000260 ORTHO05D000318 7.0e-06 53.5 70 41.4
Ca_11132_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 7.0e-06 53.5 70 42.9
Ciclev10018735m.g Citrus clementina HOM05D000260 ORTHO05D000318 7.0e-06 53.5 71 45.1
COL.COLO4_07249 Corchorus olitorius HOM05D000260 ORTHO05D000318 7.0e-06 53.5 65 47.7
CsaV3_2G033790 Cucumis sativus L. HOM05D000260 ORTHO05D000318 7.0e-06 53.5 70 40.0
Lalb_Chr14g0371021 Lupinus albus HOM05D000260 ORTHO05D000318 7.0e-06 53.5 65 47.7
Medtr6g083020 Medicago truncatula HOM05D000260 ORTHO05D000318 7.0e-06 53.5 65 44.6
Oeu057746.1 Olea europaea HOM05D000260 ORTHO05D000318 7.0e-06 53.5 70 45.7
Phvul.008G007900 Phaseolus vulgaris HOM05D000260 ORTHO05D000318 7.0e-06 53.5 63 44.4
CiPaw.15G132800 Carya illinoinensis HOM05D000260 ORTHO05D000318 9.2e-06 53.1 65 46.2
AUR62009020 Chenopodium quinoa HOM05D000260 ORTHO05D000318 9.2e-06 53.1 71 40.8
Duzib251G0401 Durio zibethinus HOM05D000260 ORTHO05D000318 9.2e-06 53.1 70 41.4
Glyma.19G073200 Glycine max HOM05D000260 ORTHO05D000318 9.2e-06 53.1 74 44.6
Lj3A880G112 Lonicera japonica HOM05D000260 ORTHO05D010362 9.2e-06 53.1 71 43.7
Nn4g23934 Nelumbo nucifera HOM05D000260 ORTHO05D000318 9.2e-06 53.1 72 41.7
Oeu050383.1 Olea europaea HOM05D000260 ORTHO05D000318 9.2e-06 53.1 64 40.6
THA.LOC104823850 Tarenaya hassleriana HOM05D000260 ORTHO05D000318 9.2e-06 53.1 65 43.1
Thecc.03G039500 Theobroma cacao HOM05D000260 ORTHO05D000318 9.2e-06 53.1 65 46.2


User provided reference genes

Program Settings