Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI21863 Sapria himalayana HOM05D000558 ORTHO05D006060 1.6e-52 209.1 107 100.0
SHI24500 Sapria himalayana HOM05D000558 ORTHO05D006060 1.3e-20 103.2 114 53.5
Manes.09G074219 Manihot esculenta HOM05D000558 ORTHO05D006060 1.6e-12 76.3 114 42.1
CANSAT78G0694 Cannabis sativa HOM05D000558 ORTHO05D006060 6.2e-12 74.3 109 43.1
Ciclev10012628m.g Citrus clementina HOM05D000558 ORTHO05D006060 1.4e-11 73.2 109 41.3
Hma1.2p1_0221F.1_g093060 Hydrangea macrophylla HOM05D000558 ORTHO05D006060 2.4e-11 72.4 109 41.3
Potri.016G024900 Populus trichocarpa HOM05D000558 ORTHO05D006060 6.9e-11 70.9 109 42.2
Duzib093G0609 Durio zibethinus HOM05D000558 ORTHO05D006060 9.0e-11 70.5 109 40.4
PGR042G3619 Punica granatum HOM05D000558 ORTHO05D006060 1.2e-10 70.1 109 41.3
MD02G1144000 Malus domestica HOM05D000558 ORTHO05D006060 1.5e-10 69.7 109 41.3
Thecc.05G129900 Theobroma cacao HOM05D000558 ORTHO05D006060 1.5e-10 69.7 108 41.7
Cfa019914 Carpinus fangiana HOM05D000558 ORTHO05D006060 2.0e-10 69.3 110 40.9
Gohir.D05G377500 Gossypium hirsutum HOM05D000558 ORTHO05D006060 2.6e-10 68.9 109 39.4
Gorai.009G445300 Gossypium raimondii HOM05D000558 ORTHO05D006060 2.6e-10 68.9 109 39.4
Lj1g0006192 Lotus japonicus HOM05D000558 ORTHO05D006060 2.6e-10 68.9 111 38.7
Sabra16G0030800 Salix brachista HOM05D000558 ORTHO05D006060 2.6e-10 68.9 109 40.4
MELO3C009719.2 Cucumis melo HOM05D000558 ORTHO05D006060 3.4e-10 68.6 101 42.6
Oeu060749.1 Olea europaea HOM05D000558 ORTHO05D006060 3.4e-10 68.6 109 37.6
Prupe.7G020600 Prunus persica HOM05D000558 ORTHO05D006060 3.4e-10 68.6 109 40.4
Actinidia06449 Actinidia chinensis HOM05D000558 ORTHO05D006060 4.5e-10 68.2 103 42.7
ClCG10G016560 Citrullus lanatus HOM05D000558 ORTHO05D006060 4.5e-10 68.2 103 41.7
Gohir.A04G010500 Gossypium hirsutum HOM05D000558 ORTHO05D006060 4.5e-10 68.2 109 39.4
MD15G1257400 Malus domestica HOM05D000558 ORTHO05D006060 4.5e-10 68.2 109 40.4
Sed0009539 Sechium edule HOM05D000558 ORTHO05D006060 4.5e-10 68.2 108 38.9
Lsat_1_v5_gn_9_30301 Lactuca sativa HOM05D000558 ORTHO05D006060 5.8e-10 67.8 109 36.7
CiPaw.10G122600 Carya illinoinensis HOM05D000558 ORTHO05D006060 1.0e-09 67.0 110 40.0
COL.COLO4_10582 Corchorus olitorius HOM05D000558 ORTHO05D006060 1.0e-09 67.0 109 40.4
Potri.006G027200 Populus trichocarpa HOM05D000558 ORTHO05D006060 1.0e-09 67.0 109 36.7
Dinv11641 Davidia involucrata HOM05D000558 ORTHO05D006060 1.3e-09 66.6 109 38.5
THA.LOC104814769 Tarenaya hassleriana HOM05D000558 ORTHO05D006060 2.2e-09 65.9 112 33.9
Lalb_Chr14g0365291 Lupinus albus HOM05D000558 ORTHO05D006060 2.9e-09 65.5 109 39.4
RcHm_v2.0_Chr2g0122531 Rosa chinensis HOM05D000558 ORTHO05D006060 2.9e-09 65.5 109 38.5
Sp5g05640 Schrenkiella parvula HOM05D000558 ORTHO05D006060 3.8e-09 65.1 110 34.5
TWI77G0858 Tripterygium wilfordii HOM05D000558 ORTHO05D006060 3.8e-09 65.1 109 37.6
VMungo1383G1708 Vigna mungo HOM05D000558 ORTHO05D006060 3.8e-09 65.1 113 37.2
GSVIVG01025840001 Vitis vinifera HOM05D000558 ORTHO05D006060 3.8e-09 65.1 109 38.5
BcaC08g44812 Brassica carinata HOM05D000558 ORTHO05D006060 4.9e-09 64.7 110 34.5
A07p23160 Brassica napus HOM05D000558 ORTHO05D006060 4.9e-09 64.7 110 34.5
C06p23880 Brassica napus HOM05D000558 ORTHO05D006060 4.9e-09 64.7 110 34.5
BolC6t37556H Brassica oleracea HOM05D000558 ORTHO05D006060 4.9e-09 64.7 110 34.5
BraA07t29977Z Brassica rapa HOM05D000558 ORTHO05D006060 4.9e-09 64.7 110 34.5
Migut.J01566 Erythranthe guttata HOM05D000558 ORTHO05D006060 4.9e-09 64.7 109 34.9
BcaB02g07633 Brassica carinata HOM05D000558 ORTHO05D006060 6.5e-09 64.3 110 34.5
CARHR167100 Cardamine hirsuta HOM05D000558 ORTHO05D006060 6.5e-09 64.3 108 35.2
Thhalv10006214m.g Eutrema salsugineum HOM05D000558 ORTHO05D006060 6.5e-09 64.3 108 34.3
EL10Ac3g07350 Beta vulgaris HOM05D000558 ORTHO05D006060 8.4e-09 63.9 102 36.3
Ca_08343_v3 Cicer arietinum L. HOM05D000558 ORTHO05D006060 8.4e-09 63.9 101 38.6
Glyma.19G123600 Glycine max HOM05D000558 ORTHO05D006060 8.4e-09 63.9 113 39.8
Rhsim02G0221000 Rhododendron simsii HOM05D000558 ORTHO05D006060 8.4e-09 63.9 103 40.8
BcaB02g08341 Brassica carinata HOM05D000558 ORTHO05D006060 1.1e-08 63.5 110 33.6
BcaC07g40104 Brassica carinata HOM05D000558 ORTHO05D006060 1.1e-08 63.5 110 34.5
Carub.0005s2369 Capsella rubella HOM05D000558 ORTHO05D006060 1.1e-08 63.5 108 35.2
vmacro11286 Vaccinium macrocarpon HOM05D000558 ORTHO05D006060 1.4e-08 63.2 103 38.8
AL5G38380 Arabidopsis lyrata HOM05D000558 ORTHO05D006060 1.9e-08 62.8 110 33.6
BcaC02g09880 Brassica carinata HOM05D000558 ORTHO05D006060 2.5e-08 62.4 110 32.7
A04p03630 Brassica napus HOM05D000558 ORTHO05D006060 2.5e-08 62.4 110 32.7
C04p35610 Brassica napus HOM05D000558 ORTHO05D006060 2.5e-08 62.4 110 32.7
BolC4t25243H Brassica oleracea HOM05D000558 ORTHO05D006060 2.5e-08 62.4 110 32.7
BraA04t16072Z Brassica rapa HOM05D000558 ORTHO05D006060 2.5e-08 62.4 110 32.7
HanXRQChr10g0291951 Helianthus annuus HOM05D000558 ORTHO05D006060 4.2e-08 61.6 103 36.9
Sc19g0007840 Simmondsia chinensis HOM05D000558 ORTHO05D006060 4.2e-08 61.6 102 37.3
AT3G56950 Arabidopsis thaliana HOM05D000558 ORTHO05D006060 5.5e-08 61.2 110 33.6
CSS0006527 Camellia sinensis var. sinensis HOM05D000558 ORTHO05D006060 5.5e-08 61.2 108 38.0
CSS0034662 Camellia sinensis var. sinensis HOM05D000558 ORTHO05D006060 5.5e-08 61.2 108 38.0
Cpa.g.sc92.56 Carica papaya HOM05D000558 ORTHO05D006060 5.5e-08 61.2 109 36.7
TAR546G0003 Trochodendron aralioides HOM05D000558 ORTHO05D006060 5.5e-08 61.2 109 34.9
MSTRG.10770 Avicennia marina HOM05D000558 ORTHO05D006060 7.1e-08 60.8 109 34.9
C08p32220 Brassica napus HOM05D000558 ORTHO05D006060 7.1e-08 60.8 92 35.9
Cc06_g22730 Coffea canephora HOM05D000558 ORTHO05D006060 7.1e-08 60.8 103 39.8
DCAR_016943 Daucus carota HOM05D000558 ORTHO05D006060 7.1e-08 60.8 109 35.8
A09p49820 Brassica napus HOM05D000558 ORTHO05D006060 9.3e-08 60.5 107 33.6
BraA09t40435Z Brassica rapa HOM05D000558 ORTHO05D006060 9.3e-08 60.5 107 33.6
MBI13_g30270_MAGBIO Magnolia biondii HOM05D000558 ORTHO05D006060 9.3e-08 60.5 96 38.5
Migut.K00175 Erythranthe guttata HOM05D000558 ORTHO05D006060 1.6e-07 59.7 109 34.9
THA.LOC104824385 Tarenaya hassleriana HOM05D000558 ORTHO05D006060 1.6e-07 59.7 110 34.5
Eucgr.A02176 Eucalyptus grandis HOM05D000558 ORTHO05D006060 4.6e-07 58.2 103 37.9
Glyma.03G119300 Glycine max HOM05D000558 ORTHO05D006060 6.0e-07 57.8 113 36.3
CiPaw.09G162700 Carya illinoinensis HOM05D000558 ORTHO05D006060 7.9e-07 57.4 109 34.9
MBI19_g17998_MAGBIO Magnolia biondii HOM05D000558 ORTHO05D006060 1.0e-06 57.0 109 37.6
Phvul.001G108800 Phaseolus vulgaris HOM05D000558 ORTHO05D006060 1.0e-06 57.0 107 35.5
Psat0s2987g0040 Pisum sativum HOM05D000558 ORTHO05D006060 1.0e-06 57.0 109 40.4
Psat3g082760 Pisum sativum HOM05D000558 ORTHO05D006060 1.0e-06 57.0 97 38.1
Psat3g082800 Pisum sativum HOM05D000558 ORTHO05D006060 1.3e-06 56.6 108 36.1
Sc13g0000760 Simmondsia chinensis HOM05D000558 ORTHO05D006060 1.3e-06 56.6 102 36.3
arahy.Tifrunner.gnm1.ann1.MFRM64 Arachis hypogaea HOM05D000558 ORTHO05D006060 1.8e-06 56.2 102 35.3
Hund24508 Selenicereus undatus HOM05D000558 ORTHO05D006060 1.8e-06 56.2 102 35.3
TPR.G20690 Trifolium pratense HOM05D000558 ORTHO05D006060 1.8e-06 56.2 101 37.6
Aa31LG10G11870 Aethionema arabicum HOM05D000558 ORTHO05D006060 2.3e-06 55.8 109 34.9
FvH4_1g24870 Fragaria vesca HOM05D000558 ORTHO05D006060 2.3e-06 55.8 103 35.0
FAN19G1330 Fragaria x ananassa HOM05D000558 ORTHO05D006060 2.3e-06 55.8 103 35.0
FAN28G1493 Fragaria x ananassa HOM05D000558 ORTHO05D006060 2.3e-06 55.8 103 35.0
Medtr7g088310 Medicago truncatula HOM05D000558 ORTHO05D006060 2.3e-06 55.8 101 36.6
TPR.G24656 Trifolium pratense HOM05D000558 ORTHO05D006060 2.3e-06 55.8 109 37.6
Ah.04g150180 Amaranthus hybridus HOM05D000558 ORTHO05D006060 3.0e-06 55.5 108 32.4
CDE02G1115 Ceratophyllum demersum HOM05D000558 ORTHO05D006060 3.9e-06 55.1 110 32.7
AUR62018444 Chenopodium quinoa HOM05D000558 ORTHO05D006060 3.9e-06 55.1 102 32.4
AUR62020989 Chenopodium quinoa HOM05D000558 ORTHO05D006060 3.9e-06 55.1 102 31.4
BcaC07g40008 Brassica carinata HOM05D000558 ORTHO05D006060 5.1e-06 54.7 93 35.5
Aqoxy1G00104 Aquilegia oxysepala HOM05D000558 ORTHO05D006060 6.7e-06 54.3 100 37.0
DCAR_020629 Daucus carota HOM05D000558 ORTHO05D006060 6.7e-06 54.3 103 35.0
Lj1A1078G61 Lonicera japonica HOM05D000558 ORTHO05D006060 6.7e-06 54.3 101 33.7
HPP92_014342 Vanilla planifolia HOM05D000558 ORTHO05D006060 6.7e-06 54.3 106 34.0
Duzib128G0051 Durio zibethinus HOM05D000558 ORTHO05D006060 8.7e-06 53.9 137 30.7
HanXRQChr04g0125531 Helianthus annuus HOM05D000558 ORTHO05D006060 8.7e-06 53.9 101 32.7
Nitab4.5_0000721g0170 Nicotiana tabacum HOM05D000558 ORTHO05D006060 8.7e-06 53.9 109 35.8


User provided reference genes

Program Settings