Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI21820 Sapria himalayana HOM05D001944 ORTHO05D002405 2.2e-48 195.3 95 100.0
Potri.004G212700 Populus trichocarpa HOM05D001944 ORTHO05D002405 6.3e-16 87.4 59 71.2
MD11G1139900 Malus domestica HOM05D001944 ORTHO05D002405 1.4e-15 86.3 59 69.5
MD03G1121600 Malus domestica HOM05D001944 ORTHO05D002405 1.8e-15 85.9 59 69.5
Prupe.6G104600 Prunus persica HOM05D001944 ORTHO05D002405 2.4e-15 85.5 59 67.8
Dinv32718 Davidia involucrata HOM05D001944 ORTHO05D002405 4.1e-15 84.7 59 67.8
Dinv01067 Davidia involucrata HOM05D001944 ORTHO05D002405 5.4e-15 84.3 59 67.8
CiPaw.14G085200 Carya illinoinensis HOM05D001944 ORTHO05D002405 1.6e-14 82.8 59 69.5
TAR636G3431 Trochodendron aralioides HOM05D001944 ORTHO05D002405 2.0e-14 82.4 59 66.1
TAR633G2605 Trochodendron aralioides HOM05D001944 ORTHO05D002405 3.5e-14 81.6 59 64.4
Cpa.g.sc311.4 Carica papaya HOM05D001944 ORTHO05D002405 5.9e-14 80.9 62 64.5
Haze_23779 Corylus avellana HOM05D001944 ORTHO05D002405 5.9e-14 80.9 57 68.4
Actinidia07154 Actinidia chinensis HOM05D001944 ORTHO05D002405 7.7e-14 80.5 58 67.2
Potri.013G006000 Populus trichocarpa HOM05D001944 ORTHO05D002405 7.7e-14 80.5 59 66.1
Ciclev10027663m.g Citrus clementina HOM05D001944 ORTHO05D002405 1.3e-13 79.7 59 59.3
Lsat_1_v5_gn_2_98901 Lactuca sativa HOM05D001944 ORTHO05D002405 1.3e-13 79.7 58 67.2
Cfa011296 Carpinus fangiana HOM05D001944 ORTHO05D002405 1.7e-13 79.3 55 69.1
Eucgr.B02518 Eucalyptus grandis HOM05D001944 ORTHO05D002405 1.7e-13 79.3 59 61.0
Atru.chr8.1406 Acer truncatum HOM05D001944 ORTHO05D002405 2.3e-13 79.0 58 63.8
Lj2C1021G5 Lonicera japonica HOM05D001944 ORTHO05D002405 2.3e-13 79.0 58 60.3
vmacro03215 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 2.9e-13 78.6 58 62.1
TAR623G0602 Trochodendron aralioides HOM05D001944 ORTHO05D002405 3.8e-13 78.2 59 61.0
Os06g0102800 Oryza sativa ssp. japonica HOM05D001944 ORTHO05D002405 5.0e-13 77.8 59 62.7
Sc21g0003900 Simmondsia chinensis HOM05D001944 ORTHO05D002405 5.0e-13 77.8 58 63.8
Thecc.09G343900 Theobroma cacao HOM05D001944 ORTHO05D002405 5.0e-13 77.8 59 61.0
TAR369G0775 Trochodendron aralioides HOM05D001944 ORTHO05D002405 5.0e-13 77.8 59 61.0
GSVIVG01025216001 Vitis vinifera HOM05D001944 ORTHO05D002405 5.0e-13 77.8 59 62.7
Actinidia24118 Actinidia chinensis HOM05D001944 ORTHO05D002405 6.5e-13 77.4 58 62.1
ECA238G1293 Erigeron canadensis HOM05D001944 ORTHO05D002405 6.5e-13 77.4 58 63.8
COL.COLO4_18304 Corchorus olitorius HOM05D001944 ORTHO05D002405 1.1e-12 76.6 59 59.3
Rhsim13G0096400 Rhododendron simsii HOM05D001944 ORTHO05D002405 1.5e-12 76.3 58 62.1
PGR102G2473 Punica granatum HOM05D001944 ORTHO05D002405 1.9e-12 75.9 59 55.9
HanXRQChr14g0452741 Helianthus annuus HOM05D001944 ORTHO05D002405 2.5e-12 75.5 57 64.9
Manes.03G122401 Manihot esculenta HOM05D001944 ORTHO05D002405 3.2e-12 75.1 58 67.2
Nn2g13727 Nelumbo nucifera HOM05D001944 ORTHO05D002405 3.2e-12 75.1 59 57.6
Peaxi162Scf00167g00092 Petunia axillaris HOM05D001944 ORTHO05D002405 3.2e-12 75.1 59 62.7
Psat5g279720 Pisum sativum HOM05D001944 ORTHO05D002405 3.2e-12 75.1 59 55.9
Zm00001eb379660 Zea mays HOM05D001944 ORTHO05D002405 3.2e-12 75.1 59 57.6
Duzib168G0647 Durio zibethinus HOM05D001944 ORTHO05D002405 4.2e-12 74.7 58 62.1
Gohir.A08G199401 Gossypium hirsutum HOM05D001944 ORTHO05D002405 4.2e-12 74.7 58 60.3
Gohir.D05G104800 Gossypium hirsutum HOM05D001944 ORTHO05D002405 4.2e-12 74.7 58 63.8
Gorai.009G108800 Gossypium raimondii HOM05D001944 ORTHO05D002405 4.2e-12 74.7 58 63.8
PSO063G0478 Papaver somniferum HOM05D001944 ORTHO05D002405 5.5e-12 74.3 59 55.9
PSO339G1466 Papaver somniferum HOM05D001944 ORTHO05D002405 5.5e-12 74.3 59 55.9
PSO732G0413 Papaver somniferum HOM05D001944 ORTHO05D002405 5.5e-12 74.3 63 58.7
Gohir.A05G105000 Gossypium hirsutum HOM05D001944 ORTHO05D002405 7.2e-12 73.9 58 62.1
CSS0012038 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 9.5e-12 73.6 58 58.6
Glyma.13G324500 Glycine max HOM05D001944 ORTHO05D002405 9.5e-12 73.6 59 57.6
Medtr8g008720 Medicago truncatula HOM05D001944 ORTHO05D002405 9.5e-12 73.6 74 55.4
Nn2g11517 Nelumbo nucifera HOM05D001944 ORTHO05D002405 9.5e-12 73.6 59 59.3
Gohir.D08G216700 Gossypium hirsutum HOM05D001944 ORTHO05D002405 1.2e-11 73.2 58 58.6
Gorai.004G230500 Gossypium raimondii HOM05D001944 ORTHO05D002405 1.2e-11 73.2 58 58.6
Nitab4.5_0000181g0180 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.2e-11 73.2 61 60.7
DCAR_022760 Daucus carota HOM05D001944 ORTHO05D002405 1.6e-11 72.8 60 55.0
Glyma.12G175400 Glycine max HOM05D001944 ORTHO05D002405 2.1e-11 72.4 59 55.9
Ca_01379_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 2.8e-11 72.0 62 59.7
Ca_01395_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 2.8e-11 72.0 62 59.7
FvH4_3g31740 Fragaria vesca HOM05D001944 ORTHO05D002405 2.8e-11 72.0 69 56.5
FAN11G3960 Fragaria x ananassa HOM05D001944 ORTHO05D002405 2.8e-11 72.0 69 56.5
FAN16G2569 Fragaria x ananassa HOM05D001944 ORTHO05D002405 2.8e-11 72.0 69 56.5
FAN25G3826 Fragaria x ananassa HOM05D001944 ORTHO05D002405 2.8e-11 72.0 69 56.5
Dinv37298 Davidia involucrata HOM05D001944 ORTHO05D002405 3.6e-11 71.6 59 55.9
Nitab4.5_0006619g0010 Nicotiana tabacum HOM05D001944 ORTHO05D002405 3.6e-11 71.6 58 63.8
Solyc06g010240.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 3.6e-11 71.6 59 61.0
VMungo1080G0782 Vigna mungo HOM05D001944 ORTHO05D002405 3.6e-11 71.6 59 55.9
Aqoxy7G00183 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 4.7e-11 71.2 59 59.3
CAN.G171.6 Capsicum annuum HOM05D001944 ORTHO05D002405 4.7e-11 71.2 59 61.0
Lalb_Chr24g0394751 Lupinus albus HOM05D001944 ORTHO05D002405 4.7e-11 71.2 75 48.0
Oeu056301.1 Olea europaea HOM05D001944 ORTHO05D002405 4.7e-11 71.2 58 53.4
PSO732G0800 Papaver somniferum HOM05D001944 ORTHO05D002405 4.7e-11 71.2 61 57.4
QL01p026770 Quercus lobata HOM05D001944 ORTHO05D002405 4.7e-11 71.2 58 60.3
RcHm_v2.0_Chr5g0058411 Rosa chinensis HOM05D001944 ORTHO05D002405 4.7e-11 71.2 69 56.5
Sopen06g005090 Solanum pennellii HOM05D001944 ORTHO05D002405 4.7e-11 71.2 59 61.0
TPR.G11481 Trifolium pratense HOM05D001944 ORTHO05D002405 4.7e-11 71.2 69 52.2
MSTRG.17786 Avicennia marina HOM05D001944 ORTHO05D002405 6.1e-11 70.9 59 57.6
Phvul.005G133500 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 6.1e-11 70.9 59 54.2
Aqoxy1G01204 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 1.0e-10 70.1 58 56.9
FAN21G2742 Fragaria x ananassa HOM05D001944 ORTHO05D002405 1.0e-10 70.1 69 55.1
PSO675G2075 Papaver somniferum HOM05D001944 ORTHO05D002405 1.0e-10 70.1 61 55.7
SGA_v2.0_scaffold127G34027 Striga asiatica HOM05D001944 ORTHO05D002405 1.0e-10 70.1 59 59.3
Cc06_g04010 Coffea canephora HOM05D001944 ORTHO05D002405 1.4e-10 69.7 58 55.2
PSO675G7498 Papaver somniferum HOM05D001944 ORTHO05D002405 1.4e-10 69.7 59 54.2
SGA_v2.0_scaffold180G39633 Striga asiatica HOM05D001944 ORTHO05D002405 1.4e-10 69.7 60 51.7
TWI79G1706 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 1.4e-10 69.7 59 57.6
VMungo1383G1330 Vigna mungo HOM05D001944 ORTHO05D002405 1.4e-10 69.7 73 47.9
Lj1g0027821 Lotus japonicus HOM05D001944 ORTHO05D002405 1.8e-10 69.3 59 54.2
Migut.N02586 Erythranthe guttata HOM05D001944 ORTHO05D002405 2.3e-10 68.9 59 54.2
ClCG03G002980 Citrullus lanatus HOM05D001944 ORTHO05D002405 3.0e-10 68.6 59 54.2
CsaV3_1G013920 Cucumis sativus L. HOM05D001944 ORTHO05D002405 3.0e-10 68.6 59 55.9
ECA248G3660 Erigeron canadensis HOM05D001944 ORTHO05D002405 3.0e-10 68.6 58 53.4
Lalb_Chr25g0289071 Lupinus albus HOM05D001944 ORTHO05D002405 4.0e-10 68.2 61 54.1
Ah.01g003060 Amaranthus hybridus HOM05D001944 ORTHO05D002405 5.2e-10 67.8 60 51.7
Hund01491 Selenicereus undatus HOM05D001944 ORTHO05D002405 5.2e-10 67.8 62 56.5
SEGI_24058 Sequoiadendron giganteum HOM05D001944 ORTHO05D002405 5.2e-10 67.8 60 51.7
Thecc.05G062600 Theobroma cacao HOM05D001944 ORTHO05D002405 5.2e-10 67.8 59 55.9
MELO3C004905.2 Cucumis melo HOM05D001944 ORTHO05D002405 6.8e-10 67.4 59 54.2
Duzib128G0909 Durio zibethinus HOM05D001944 ORTHO05D002405 6.8e-10 67.4 58 56.9
Medtr2g095030 Medicago truncatula HOM05D001944 ORTHO05D002405 6.8e-10 67.4 79 49.4
CDE02G2939 Ceratophyllum demersum HOM05D001944 ORTHO05D002405 8.8e-10 67.0 58 56.9
DCAR_006070 Daucus carota HOM05D001944 ORTHO05D002405 8.8e-10 67.0 58 56.9
Glyma.03G181800 Glycine max HOM05D001944 ORTHO05D002405 8.8e-10 67.0 59 55.9
PSO017G6475 Papaver somniferum HOM05D001944 ORTHO05D002405 8.8e-10 67.0 59 52.5
HanXRQChr01g0019291 Helianthus annuus HOM05D001944 ORTHO05D002405 1.2e-09 66.6 59 49.2
PSO732G0719 Papaver somniferum HOM05D001944 ORTHO05D002405 1.2e-09 66.6 59 52.5
Lsat_1_v5_gn_1_53241 Lactuca sativa HOM05D001944 ORTHO05D002405 1.5e-09 66.2 58 56.9
Lsat_1_v5_gn_1_63980 Lactuca sativa HOM05D001944 ORTHO05D002405 1.5e-09 66.2 58 55.2
QL07p044103 Quercus lobata HOM05D001944 ORTHO05D002405 1.5e-09 66.2 59 57.6
QL93p2013_0009 Quercus lobata HOM05D001944 ORTHO05D002405 1.5e-09 66.2 59 57.6
arahy.Tifrunner.gnm1.ann1.Q55GHJ Arachis hypogaea HOM05D001944 ORTHO05D002405 3.4e-09 65.1 59 52.5
Cc01_g10870 Coffea canephora HOM05D001944 ORTHO05D002405 3.4e-09 65.1 59 50.8
PSO339G2779 Papaver somniferum HOM05D001944 ORTHO05D002405 3.4e-09 65.1 59 50.8
PSO384G1822 Papaver somniferum HOM05D001944 ORTHO05D002405 3.4e-09 65.1 59 50.8
arahy.Tifrunner.gnm1.ann1.BHY38Y Arachis hypogaea HOM05D001944 ORTHO05D002405 4.4e-09 64.7 59 52.5
Oeu036621.1 Olea europaea HOM05D001944 ORTHO05D002405 4.4e-09 64.7 61 50.8
Phvul.001G177901 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 5.7e-09 64.3 59 50.8
Psat3g043480 Pisum sativum HOM05D001944 ORTHO05D002405 5.7e-09 64.3 59 49.2
Medtr7g101465 Medicago truncatula HOM05D001944 ORTHO05D002405 7.5e-09 63.9 59 49.2
ATR0048G049 Amborella trichopoda HOM05D001944 ORTHO05D002405 9.8e-09 63.5 58 50.0
EL10Ac7g16595 Beta vulgaris HOM05D001944 ORTHO05D002405 9.8e-09 63.5 93 40.9
Lj2A114T42 Lonicera japonica HOM05D001944 ORTHO05D002405 9.8e-09 63.5 59 52.5
Sc20g0005300 Simmondsia chinensis HOM05D001944 ORTHO05D002405 9.8e-09 63.5 58 51.7
TPR.G9371 Trifolium pratense HOM05D001944 ORTHO05D002405 9.8e-09 63.5 59 49.2
THA.LOC104800593 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 1.3e-08 63.2 60 46.7
AUR62029226 Chenopodium quinoa HOM05D001944 ORTHO05D002405 1.7e-08 62.8 59 52.5
Psat0s1467g0160 Pisum sativum HOM05D001465 ORTHO05D002405 1.7e-08 62.8 57 49.1
Rhsim05G0179600 Rhododendron simsii HOM05D001944 ORTHO05D002405 1.7e-08 62.8 61 52.5
HanXRQChr13g0421871 Helianthus annuus HOM05D001944 ORTHO05D002405 2.2e-08 62.4 72 44.4
Lj3g0013525 Lotus japonicus HOM05D001944 ORTHO05D002405 2.2e-08 62.4 59 50.8
SGA_v2.0_scaffold40G15544 Striga asiatica HOM05D001944 ORTHO05D002405 2.2e-08 62.4 58 53.4
Ca_08850_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 2.8e-08 62.0 59 45.8
Psat0s3521g0040 Pisum sativum HOM05D001944 ORTHO05D002405 3.7e-08 61.6 57 47.4
HanXRQChr01g0019301 Helianthus annuus HOM05D001944 ORTHO05D002405 4.9e-08 61.2 58 44.8
ECA248G2037 Erigeron canadensis HOM05D001944 ORTHO05D002405 6.3e-08 60.8 58 50.0
DCAR_020831 Daucus carota HOM05D001944 ORTHO05D002405 8.3e-08 60.5 61 47.5
BcaC07g42507 Brassica carinata HOM05D001944 ORTHO05D002405 1.1e-07 60.1 60 40.0
THA.LOC104826377 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 1.1e-07 60.1 60 45.0
SalBow3G2448 Salvia bowleyana HOM05D001944 ORTHO05D002405 1.4e-07 59.7 61 49.2
Sp1g06700 Schrenkiella parvula HOM05D001944 ORTHO05D002405 1.4e-07 59.7 57 45.6
AL1G18410 Arabidopsis lyrata HOM05D001944 ORTHO05D002405 1.8e-07 59.3 57 47.4
AT1G08060 Arabidopsis thaliana HOM05D001944 ORTHO05D002405 1.8e-07 59.3 57 47.4
Thhalv10006530m.g Eutrema salsugineum HOM05D001944 ORTHO05D002405 1.8e-07 59.3 57 45.6
ECA248G2414 Erigeron canadensis HOM05D001944 ORTHO05D002405 2.4e-07 58.9 58 46.6
Lsat_1_v5_gn_1_53160 Lactuca sativa HOM05D001944 ORTHO05D002405 2.4e-07 58.9 55 52.7
Carub.0001s0741 Capsella rubella HOM05D001944 ORTHO05D002405 3.1e-07 58.5 57 45.6
BraA09t41943Z Brassica rapa HOM05D001944 ORTHO05D002405 4.1e-07 58.2 58 46.6
HanXRQChr01g0027491 Helianthus annuus HOM05D001944 ORTHO05D002405 4.1e-07 58.2 59 45.8
unitig_21.g20905 Utricularia gibba HOM05D001944 ORTHO05D002405 4.1e-07 58.2 59 44.1
Actinidia19662 Actinidia chinensis HOM05D001944 ORTHO05D002405 7.0e-07 57.4 61 47.5
arahy.Tifrunner.gnm1.ann1.LUG37R Arachis hypogaea HOM05D001944 ORTHO05D002405 7.0e-07 57.4 59 47.5
arahy.Tifrunner.gnm1.ann1.R0WL9G Arachis hypogaea HOM05D001944 ORTHO05D002405 7.0e-07 57.4 59 47.5
CARHR007860 Cardamine hirsuta HOM05D001944 ORTHO05D002405 7.0e-07 57.4 57 43.9
ECA248G2804 Erigeron canadensis HOM05D001944 ORTHO05D002405 7.0e-07 57.4 58 50.0
BcaB02g06690 Brassica carinata HOM05D000550 ORTHO05D002405 9.2e-07 57.0 57 43.9
A06p05120 Brassica napus HOM05D001944 ORTHO05D002405 9.2e-07 57.0 57 43.9
BraA06t23719Z Brassica rapa HOM05D001944 ORTHO05D002405 9.2e-07 57.0 57 43.9
BcaC05g24721 Brassica carinata HOM05D001944 ORTHO05D002405 1.6e-06 56.2 57 43.9
C05p06080 Brassica napus HOM05D001944 ORTHO05D002405 1.6e-06 56.2 57 43.9
BolC5t29368H Brassica oleracea HOM05D001944 ORTHO05D002405 1.6e-06 56.2 57 43.9
TWI74G0797 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 1.6e-06 56.2 58 58.6
A09p66040 Brassica napus HOM05D001944 ORTHO05D002405 2.7e-06 55.5 57 45.6
COL.COLO4_26992 Corchorus olitorius HOM05D001944 ORTHO05D002405 2.7e-06 55.5 52 48.1
Peaxi162Scf00123g00910 Petunia axillaris HOM05D001944 ORTHO05D002405 2.7e-06 55.5 59 45.8
BolC8t52549H Brassica oleracea HOM05D001944 ORTHO05D002405 4.5e-06 54.7 58 43.1


User provided reference genes

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