Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI21661 Sapria himalayana HOM05D004340 ORTHO05D006363 1.6e-67 259.2 127 100.0
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 8.8e-13 77.4 75 53.3
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 1.1e-12 77.0 71 59.2
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 1.1e-12 77.0 75 53.3
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 1.5e-12 76.6 72 56.9
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 1.9e-12 76.3 75 54.7
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 2.5e-12 75.9 75 53.3
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 3.3e-12 75.5 71 59.2
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 3.3e-12 75.5 71 59.2
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 3.3e-12 75.5 75 53.3
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 4.3e-12 75.1 75 54.7
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 4.3e-12 75.1 74 55.4
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 5.7e-12 74.7 72 56.9
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 5.7e-12 74.7 71 57.7
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 9.7e-12 73.9 71 57.7
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 9.7e-12 73.9 72 54.2
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 1.3e-11 73.6 75 53.3
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 1.7e-11 73.2 71 53.5
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 2.8e-11 72.4 72 51.4
Cpa.g.sc1.50 Carica papaya HOM05D004340 ORTHO05D006363 3.7e-11 72.0 90 47.8
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 3.7e-11 72.0 74 54.1
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 3.7e-11 72.0 71 53.5
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 4.8e-11 71.6 81 48.1
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 4.8e-11 71.6 70 52.9
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 6.3e-11 71.2 72 51.4
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 6.3e-11 71.2 72 51.4
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 8.2e-11 70.9 82 48.8
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 1.1e-10 70.5 82 48.8
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.8e-10 69.7 71 54.9
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 3.1e-10 68.9 88 47.7
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 3.1e-10 68.9 82 48.8
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 3.1e-10 68.9 72 51.4
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 3.1e-10 68.9 82 47.6
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 4.1e-10 68.6 72 50.0
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 5.3e-10 68.2 71 53.5
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 5.3e-10 68.2 70 52.9
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 6.9e-10 67.8 72 51.4
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 9.1e-10 67.4 73 57.5
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 9.1e-10 67.4 72 52.8
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 1.2e-09 67.0 72 50.0
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 1.2e-09 67.0 75 48.0
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 1.5e-09 66.6 72 45.8
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 1.5e-09 66.6 102 40.2
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 2.0e-09 66.2 89 47.2
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 2.0e-09 66.2 71 54.9
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 3.4e-09 65.5 82 43.9
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 3.4e-09 65.5 70 52.9
vmacro05169 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 4.5e-09 65.1 71 49.3
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 5.9e-09 64.7 70 48.6
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 5.9e-09 64.7 72 50.0
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 7.7e-09 64.3 72 50.0
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 7.7e-09 64.3 72 52.8
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 1.7e-08 63.2 64 51.6
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 1.7e-08 63.2 82 43.9
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 1.7e-08 63.2 82 43.9
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 3.8e-08 62.0 72 47.2
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 3.8e-08 62.0 82 42.7
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 3.8e-08 62.0 82 42.7
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 3.8e-08 62.0 71 49.3
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 3.8e-08 62.0 94 40.4
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 5.0e-08 61.6 72 47.2
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 8.5e-08 60.8 72 45.8
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 1.1e-07 60.5 72 45.8
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 1.4e-07 60.1 72 47.2
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 1.4e-07 60.1 72 48.6
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 1.4e-07 60.1 102 36.3
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 1.9e-07 59.7 70 47.1
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 1.9e-07 59.7 73 49.3
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 1.9e-07 59.7 70 48.6
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 2.5e-07 59.3 69 47.8
TPR.G26189 Trifolium pratense HOM05D004340 ORTHO05D006363 3.2e-07 58.9 91 39.6
HPP92_022007 Vanilla planifolia HOM05D004340 ORTHO05D006363 3.2e-07 58.9 99 38.4
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 4.2e-07 58.5 73 41.1
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 4.2e-07 58.5 72 45.8
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 4.2e-07 58.5 77 45.5
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 5.5e-07 58.2 72 47.2
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 7.2e-07 57.8 82 42.7
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 7.2e-07 57.8 78 46.2
ECA233G3760 Erigeron canadensis HOM05D004340 ORTHO05D006363 7.2e-07 57.8 71 42.3
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 7.2e-07 57.8 85 40.0
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 7.2e-07 57.8 72 43.1
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 7.2e-07 57.8 69 49.3
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 7.2e-07 57.8 69 49.3
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 7.2e-07 57.8 69 49.3
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 9.4e-07 57.4 78 44.9
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 9.4e-07 57.4 69 46.4
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 1.6e-06 56.6 82 42.7
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 2.7e-06 55.8 91 38.5
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 2.7e-06 55.8 74 44.6
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 2.7e-06 55.8 71 43.7
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 3.6e-06 55.5 71 42.3
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 3.6e-06 55.5 71 40.8
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 3.6e-06 55.5 88 40.9
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 6.1e-06 54.7 72 44.4
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 6.1e-06 54.7 84 38.1


User provided reference genes

Program Settings