Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 0.0e+00 1396.3 722 100.0
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 1.6e-180 637.1 699 56.2
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 8.8e-134 481.9 721 43.6
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 8.2e-132 475.3 724 44.9
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 1.5e-130 471.1 671 43.7
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 4.5e-130 469.5 719 44.6
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 1.0e-129 468.4 699 42.8
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 1.0e-129 468.4 690 43.5
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 2.2e-129 467.2 708 45.1
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 2.2e-129 467.2 722 44.5
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 5.0e-129 466.1 727 44.6
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 5.0e-129 466.1 704 46.0
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 7.2e-128 462.2 719 44.2
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 2.7e-127 460.3 692 43.1
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 2.7e-127 460.3 726 43.1
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 4.7e-127 459.5 707 42.1
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.0e-126 456.8 712 44.9
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 3.9e-126 456.4 719 44.6
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 8.8e-126 455.3 674 42.7
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 1.5e-125 454.5 703 43.0
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 2.0e-125 454.1 674 43.2
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 2.0e-125 454.1 705 45.1
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 1.3e-124 451.4 709 43.9
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 2.2e-124 450.7 687 41.5
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 6.3e-124 449.1 718 42.6
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 8.2e-124 448.7 724 43.8
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 1.1e-123 448.4 683 41.9
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.4e-123 448.0 606 44.1
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 1.8e-123 447.6 724 41.9
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 2.4e-123 447.2 727 41.0
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 5.3e-123 446.0 684 41.8
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 7.0e-123 445.7 689 42.2
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 2.6e-122 443.7 704 41.8
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 2.6e-122 443.7 637 42.5
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 3.5e-122 443.4 621 43.6
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 3.5e-122 443.4 705 43.3
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 5.9e-122 442.6 669 41.9
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 1.0e-121 441.8 684 42.0
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 1.3e-121 441.4 716 42.2
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 2.9e-121 440.3 713 43.1
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 3.8e-121 439.9 706 41.9
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 8.5e-121 438.7 647 42.3
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 1.5e-120 438.0 670 42.1
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 4.2e-120 436.4 636 42.5
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 4.2e-120 436.4 715 40.7
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 1.2e-119 434.9 646 42.0
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 1.6e-119 434.5 708 42.7
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 2.7e-119 433.7 707 43.1
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 3.6e-119 433.3 672 41.2
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 1.0e-118 431.8 665 41.4
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 1.8e-118 431.0 706 41.9
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 3.0e-118 430.3 661 41.5
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 3.9e-118 429.9 689 41.2
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 1.5e-117 427.9 689 41.7
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 2.0e-117 427.6 696 39.9
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 5.7e-117 426.0 669 40.8
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 1.7e-116 424.5 705 42.0
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 8.2e-116 422.2 638 40.9
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 1.1e-115 421.8 706 42.5
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 1.4e-115 421.4 610 43.6
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 1.8e-115 421.0 703 40.8
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 5.3e-115 419.5 688 41.0
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 9.1e-115 418.7 710 43.1
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 1.6e-114 417.9 669 41.4
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 2.0e-114 417.5 604 43.0
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 2.0e-114 417.5 669 40.4
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 2.0e-114 417.5 705 40.4
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 7.7e-114 415.6 722 41.3
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 1.7e-113 414.5 620 42.1
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 2.9e-113 413.7 705 41.4
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 8.5e-113 412.1 604 42.7
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 8.5e-113 412.1 610 42.5
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 1.1e-112 411.8 737 38.1
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 3.2e-112 410.2 708 39.3
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 4.2e-112 409.8 608 41.6
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 4.2e-112 409.8 608 41.6
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 4.7e-111 406.4 689 39.8
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 6.1e-111 406.0 744 41.3
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 8.0e-111 405.6 599 41.9
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 1.4e-110 404.8 618 40.8
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.8e-110 404.4 705 41.3
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 2.3e-110 404.1 722 41.4
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 3.0e-110 403.7 612 40.5
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 4.0e-110 403.3 593 42.7
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 5.2e-110 402.9 729 39.8
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 8.8e-110 402.1 705 40.9
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 3.4e-109 400.2 677 39.9
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 4.4e-109 399.8 671 40.1
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 4.4e-109 399.8 606 42.1
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 2.2e-108 397.5 705 41.0
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 2.2e-108 397.5 658 39.5
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 1.4e-107 394.8 705 40.6
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 5.4e-107 392.9 679 40.8
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 1.2e-106 391.7 609 39.6
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 2.7e-106 390.6 687 38.0
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.7e-106 390.6 711 41.8
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 4.5e-106 389.8 672 39.4
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.3e-105 388.3 705 41.3
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 8.5e-105 385.6 705 38.4
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 7.2e-104 382.5 686 37.0
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 8.0e-103 379.0 725 38.9
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 3.7e-100 370.2 693 38.1
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 9.1e-99 365.5 628 39.3
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.7e-97 361.3 548 42.0
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 2.9e-97 360.5 704 39.5
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 3.8e-97 360.1 416 51.0
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 5.0e-97 359.8 660 37.9
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 6.6e-97 359.4 658 37.5
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 4.2e-96 356.7 523 44.4
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 2.8e-95 354.0 722 37.3
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 3.6e-95 353.6 698 38.0
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 3.7e-92 343.6 397 50.9
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 3.7e-92 343.6 703 36.3
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 4.9e-92 343.2 698 35.8
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 3.2e-91 340.5 348 55.2
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 5.4e-91 339.7 703 36.1
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 5.9e-90 336.3 701 35.7
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 1.7e-89 334.7 667 36.4
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 1.9e-88 331.3 674 35.0
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 2.5e-88 330.9 655 37.3
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 4.3e-88 330.1 683 35.7
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 6.8e-86 322.8 700 36.9
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.2e-85 322.0 676 35.8
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 6.4e-84 316.2 594 36.0
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 3.2e-83 313.9 635 38.7
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 7.0e-83 312.8 571 37.8
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 1.5e-77 295.0 632 34.2
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 1.6e-74 285.0 551 35.0
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 2.7e-74 284.3 282 55.3
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 4.6e-74 283.5 517 36.8
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 1.7e-73 281.6 373 52.3
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 2.6e-69 267.7 256 57.4
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 4.6e-66 256.9 266 50.4
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 6.0e-66 256.5 589 31.1
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 1.3e-65 255.4 332 45.2
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 2.3e-65 254.6 676 32.1
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 5.1e-65 253.4 344 45.6
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 5.2e-62 243.4 675 31.9
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 2.6e-61 241.1 607 33.8
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 3.4e-61 240.7 553 33.6
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 6.4e-60 236.5 282 50.0
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 1.4e-59 235.3 272 49.3
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 1.9e-59 235.0 340 44.4
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 7.1e-59 233.0 343 42.9
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 2.1e-58 231.5 281 52.3
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 5.1e-57 226.9 184 63.6
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 2.1e-55 221.5 280 44.6
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 8.4e-52 209.5 300 38.3
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 1.7e-49 201.8 182 55.5
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 6.4e-44 183.3 333 36.9
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 2.8e-39 167.9 445 30.8
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 1.2e-34 152.5 423 29.6
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 4.3e-32 144.1 98 65.3
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 2.1e-31 141.7 100 69.0
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 2.4e-30 138.3 271 41.0
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 1.8e-17 95.5 72 66.7
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 3.9e-17 94.4 231 33.8
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 8.2e-15 86.7 253 29.6
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 6.9e-14 83.6 81 58.0
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 2.6e-13 81.6 135 40.0
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 1.3e-12 79.3 132 37.1
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 5.0e-12 77.4 44 79.5
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 4.2e-11 74.3 92 44.6
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 2.7e-10 71.6 84 45.2
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 2.7e-10 71.6 118 39.0
ECA247G3860 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.4e-09 69.3 75 50.7
ECA247G3834 Erigeron canadensis HOM05D000031 ORTHO05D000030 2.0e-08 65.5 65 55.4
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 1.7e-07 62.4 45 66.7
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 2.8e-07 61.6 85 43.5
FAN13G0915 Fragaria x ananassa HOM05D003858 ORTHO05D204259 3.1e-06 58.2 112 38.4
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 4.1e-06 57.8 135 31.9
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 4.1e-06 57.8 170 33.5


User provided reference genes

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