Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 1.4e-276 955.7 473 100.0
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 3.2e-177 625.5 471 67.7
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 4.6e-176 621.7 470 67.7
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 4.8e-173 611.7 471 67.5
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 4.1e-172 608.6 467 66.0
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 5.3e-172 608.2 473 66.2
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 5.3e-172 608.2 473 66.2
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 5.3e-172 608.2 473 66.2
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 6.9e-172 607.8 474 66.7
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 9.1e-172 607.4 470 67.0
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 1.2e-171 607.1 470 66.8
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 2.6e-171 605.9 471 66.7
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 7.7e-171 604.4 473 66.0
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 1.7e-170 603.2 470 64.9
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 2.2e-170 602.8 471 65.0
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 6.5e-170 601.3 472 65.7
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 1.1e-169 600.5 472 65.9
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 1.1e-169 600.5 469 64.6
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 1.9e-169 599.7 473 65.3
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 3.2e-169 599.0 466 65.5
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 6.1e-168 594.7 468 64.5
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 7.9e-168 594.3 471 66.5
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 6.7e-167 591.3 469 65.0
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 1.1e-166 590.5 471 64.1
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 1.3e-165 587.0 471 64.1
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 4.1e-164 582.0 471 64.1
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 4.1e-164 582.0 467 64.9
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 1.2e-163 580.5 467 65.1
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 1.2e-163 580.5 469 64.2
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 3.4e-163 578.9 469 63.3
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 3.4e-163 578.9 468 64.1
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 7.7e-163 577.8 469 63.3
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 1.0e-162 577.4 468 63.2
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 1.3e-162 577.0 471 64.5
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 1.7e-162 576.6 467 63.6
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 2.9e-162 575.9 471 64.3
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 5.0e-162 575.1 471 64.3
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 5.0e-162 575.1 471 64.3
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.4e-161 573.5 468 63.7
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 1.9e-161 573.2 471 63.1
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.2e-160 570.5 479 62.2
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 2.1e-160 569.7 469 63.8
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 3.6e-160 568.9 469 64.2
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 4.7e-160 568.5 467 63.8
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 6.1e-160 568.2 471 63.1
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 8.0e-160 567.8 467 63.4
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 1.8e-159 566.6 472 63.1
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 2.3e-159 566.2 473 62.4
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 1.1e-158 563.9 473 63.0
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 2.6e-158 562.8 472 62.1
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 5.7e-158 561.6 544 57.2
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 5.7e-158 561.6 473 62.6
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 9.7e-158 560.8 474 63.3
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 1.3e-157 560.5 474 62.7
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 8.2e-157 557.8 473 60.9
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 1.4e-156 557.0 474 59.9
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 2.4e-156 556.2 468 61.8
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 4.1e-156 555.4 473 59.8
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 5.3e-156 555.1 471 60.7
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 2.0e-155 553.1 468 61.5
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 2.6e-155 552.7 469 61.8
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 2.6e-155 552.7 532 55.6
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 1.7e-154 550.1 473 61.1
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 2.2e-154 549.7 474 60.5
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 1.1e-153 547.4 472 60.8
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 2.5e-153 546.2 468 60.7
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 2.5e-153 546.2 471 61.4
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 7.2e-153 544.7 471 61.8
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 9.4e-153 544.3 473 59.2
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 1.6e-152 543.5 466 60.3
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 4.7e-152 542.0 473 60.3
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 6.1e-152 541.6 470 60.4
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 6.1e-152 541.6 467 61.5
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 1.8e-151 540.0 466 60.1
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 2.3e-151 539.7 473 60.9
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 2.6e-150 536.2 474 58.0
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 8.2e-149 531.2 472 60.4
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 2.4e-148 529.6 471 59.7
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 9.1e-148 527.7 473 59.2
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 9.1e-148 527.7 474 57.8
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 1.6e-147 526.9 473 57.7
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 4.5e-147 525.4 474 60.1
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 7.7e-147 524.6 471 59.4
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 1.7e-146 523.5 471 58.4
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 5.0e-146 521.9 505 55.4
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 5.0e-146 521.9 467 59.3
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 8.5e-146 521.2 502 55.0
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.5e-145 520.4 471 58.2
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 1.9e-145 520.0 468 59.0
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 2.5e-145 519.6 473 57.7
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 5.5e-145 518.5 476 58.4
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 5.5e-145 518.5 547 54.3
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 8.0e-144 514.6 468 59.0
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 8.0e-144 514.6 468 59.0
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 8.0e-144 514.6 480 58.5
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 3.0e-143 512.7 469 59.9
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 8.8e-143 511.1 469 59.1
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 8.8e-143 511.1 469 59.1
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 8.8e-143 511.1 469 59.1
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 1.2e-142 510.8 463 57.9
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 1.5e-142 510.4 468 58.1
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 2.6e-142 509.6 473 57.1
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 2.6e-142 509.6 473 57.1
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 3.4e-142 509.2 469 59.5
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 3.4e-142 509.2 473 58.6
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 7.5e-142 508.1 467 56.7
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 9.8e-142 507.7 485 55.7
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 2.2e-141 506.5 466 57.9
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 8.3e-141 504.6 466 57.5
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 2.0e-139 500.0 516 54.7
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 3.5e-139 499.2 383 68.4
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 2.1e-136 490.0 355 69.9
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 6.8e-135 485.0 473 56.4
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 1.2e-134 484.2 467 56.3
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 1.5e-134 483.8 443 58.0
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 2.2e-133 479.9 454 56.4
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 3.0e-127 459.5 474 54.2
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 4.4e-126 455.7 356 65.7
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 4.9e-125 452.2 472 53.0
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 1.8e-124 450.3 395 60.5
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 2.0e-118 430.3 480 49.2
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 3.1e-103 379.8 501 44.5
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 8.4e-101 371.7 386 53.1
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 7.3e-97 358.6 498 41.0
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 1.1e-92 344.7 498 41.4
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 2.7e-91 340.1 491 39.9
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 7.8e-91 338.6 460 42.8
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 6.2e-80 302.4 218 73.9
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.9e-73 280.8 288 56.2
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 5.8e-70 269.2 247 55.9
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 4.2e-68 263.1 306 48.0
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 2.4e-55 220.7 417 35.5
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 5.0e-53 213.0 167 62.3
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 7.4e-49 199.1 187 55.1
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 8.2e-48 195.7 150 72.0
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 2.6e-46 190.7 267 46.8
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 1.6e-43 181.4 172 60.5
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.8e-39 167.9 88 88.6
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 1.6e-38 164.9 275 41.1
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 1.2e-27 128.6 97 66.0
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 2.0e-22 111.3 273 31.5
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 3.5e-22 110.5 109 50.5
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 1.0e-21 109.0 59 88.1
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 9.5e-20 102.4 77 71.4
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 1.2e-19 102.1 116 56.0
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 1.2e-17 95.5 57 78.9
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 5.7e-17 93.2 68 70.6


User provided reference genes

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