Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 1.7e-117 426.0 213 100.0
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 8.0e-35 151.4 200 49.0
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 4.9e-32 142.1 200 45.5
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 1.1e-31 141.0 200 45.0
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 1.8e-31 140.2 200 45.0
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 2.4e-31 139.8 200 44.0
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 3.1e-31 139.4 200 44.0
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 3.1e-31 139.4 200 44.5
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 3.1e-31 139.4 200 44.0
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 5.4e-31 138.7 200 43.5
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 7.0e-31 138.3 200 43.0
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 1.2e-30 137.5 200 44.5
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 1.2e-30 137.5 200 44.5
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.2e-30 137.5 200 44.5
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 1.2e-30 137.5 203 40.9
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 1.2e-30 137.5 200 43.5
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 2.0e-30 136.7 200 42.5
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.0e-30 136.7 200 44.5
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 2.0e-30 136.7 200 43.0
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 2.7e-30 136.3 200 44.0
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 2.7e-30 136.3 199 42.7
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 3.5e-30 136.0 200 43.5
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 3.5e-30 136.0 205 42.4
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 3.5e-30 136.0 200 44.0
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 3.5e-30 136.0 200 43.5
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 4.5e-30 135.6 200 43.5
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 4.5e-30 135.6 200 42.5
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 4.5e-30 135.6 200 44.0
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 4.5e-30 135.6 200 43.5
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 4.5e-30 135.6 200 43.5
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 4.5e-30 135.6 200 43.5
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 4.5e-30 135.6 200 43.5
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 5.9e-30 135.2 200 42.0
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 5.9e-30 135.2 200 43.0
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 7.7e-30 134.8 200 42.5
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 7.7e-30 134.8 199 42.2
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 1.0e-29 134.4 200 43.0
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 1.0e-29 134.4 200 43.0
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 1.3e-29 134.0 200 44.0
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.7e-29 133.7 200 41.5
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 1.7e-29 133.7 200 42.0
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.3e-29 133.3 200 41.5
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 2.9e-29 132.9 200 42.0
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 2.9e-29 132.9 200 42.5
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 3.8e-29 132.5 200 42.5
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 3.8e-29 132.5 200 42.5
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 3.8e-29 132.5 200 42.5
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 3.8e-29 132.5 200 42.5
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 3.8e-29 132.5 200 41.0
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 3.8e-29 132.5 200 43.0
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 5.0e-29 132.1 200 41.0
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 6.6e-29 131.7 200 42.0
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 6.6e-29 131.7 200 41.0
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 1.1e-28 131.0 200 41.5
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.1e-28 131.0 200 42.0
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 1.1e-28 131.0 200 43.0
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.5e-28 130.6 200 41.5
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.5e-28 130.6 212 38.7
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 1.5e-28 130.6 197 41.6
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 1.9e-28 130.2 197 42.1
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 2.5e-28 129.8 211 40.8
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 2.5e-28 129.8 200 41.0
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 3.3e-28 129.4 200 41.0
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 3.3e-28 129.4 240 38.3
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 5.6e-28 128.6 201 41.8
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 7.3e-28 128.3 200 41.0
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 7.3e-28 128.3 200 40.5
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 7.3e-28 128.3 200 41.0
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 1.6e-27 127.1 200 40.5
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 2.1e-27 126.7 200 40.5
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 2.1e-27 126.7 200 40.5
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 2.1e-27 126.7 199 40.2
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.8e-27 126.3 200 40.5
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 2.8e-27 126.3 200 41.0
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 2.8e-27 126.3 200 40.0
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 2.8e-27 126.3 200 40.0
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 2.8e-27 126.3 200 41.0
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 2.8e-27 126.3 200 40.0
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 2.8e-27 126.3 200 41.5
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.8e-27 126.3 200 41.5
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 3.6e-27 125.9 92 69.6
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 3.6e-27 125.9 200 41.0
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 3.6e-27 125.9 200 41.5
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 8.0e-27 124.8 200 40.5
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 8.0e-27 124.8 92 69.6
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 8.0e-27 124.8 209 39.2
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 1.0e-26 124.4 201 39.3
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-26 124.0 209 39.2
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-26 124.0 209 39.2
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.4e-26 124.0 200 41.0
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 1.4e-26 124.0 200 40.0
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 1.8e-26 123.6 200 39.5
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.8e-26 123.6 200 39.5
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-26 123.6 200 40.0
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 2.3e-26 123.2 200 39.5
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.3e-26 123.2 200 39.5
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 2.3e-26 123.2 209 39.2
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.0e-26 122.9 200 40.5
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 3.0e-26 122.9 200 39.5
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 3.0e-26 122.9 209 39.2
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 4.0e-26 122.5 200 41.5
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 4.0e-26 122.5 200 42.0
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 8.9e-26 121.3 200 39.0
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 8.9e-26 121.3 200 39.0
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 8.9e-26 121.3 200 39.0
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 8.9e-26 121.3 200 39.0
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 8.9e-26 121.3 200 39.0
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 8.9e-26 121.3 200 39.0
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 8.9e-26 121.3 200 39.0
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.9e-26 121.3 200 38.5
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 1.2e-25 120.9 200 41.5
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 1.2e-25 120.9 200 39.5
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-25 120.6 200 38.0
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 2.0e-25 120.2 200 38.5
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 2.0e-25 120.2 200 40.5
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 2.0e-25 120.2 200 39.0
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 2.0e-25 120.2 209 38.3
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 2.6e-25 119.8 209 38.3
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.4e-25 119.4 200 37.5
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 3.4e-25 119.4 209 38.3
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 4.4e-25 119.0 92 64.1
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.4e-25 119.0 200 37.5
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 4.4e-25 119.0 200 38.5
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 5.7e-25 118.6 200 38.5
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 5.7e-25 118.6 200 38.5
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.5e-25 118.2 200 37.5
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.3e-24 117.5 205 37.6
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.3e-24 117.5 212 37.3
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 2.9e-24 116.3 200 38.0
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.4e-23 114.0 195 38.5
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.4e-23 114.0 195 38.5
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 1.4e-23 114.0 94 64.9
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.0e-21 105.5 200 35.5
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.5e-20 103.2 200 34.5
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 5.6e-20 102.1 200 36.5
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-19 100.9 200 34.5
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 1.6e-19 100.5 200 36.0
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 1.6e-19 100.5 200 35.0
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 2.1e-19 100.1 200 32.5
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.8e-19 99.8 200 33.0
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 4.7e-19 99.0 198 32.8
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 6.2e-19 98.6 75 64.0
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 4.4e-17 92.4 94 47.9
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 5.8e-17 92.0 75 66.7
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 5.8e-17 92.0 75 66.7
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 9.8e-17 91.3 82 56.1
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 3.7e-16 89.4 75 64.0
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.4e-15 86.7 69 62.3
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 2.0e-14 83.6 69 65.2
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 9.5e-12 74.7 56 69.6
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 9.5e-12 74.7 56 69.6
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 1.6e-11 73.9 94 41.5
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 1.4e-10 70.9 56 66.1
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 1.7e-08 63.9 88 42.0
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 4.9e-08 62.4 143 28.7
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 8.3e-08 61.6 92 37.0
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 9.2e-07 58.2 92 34.8
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 4.6e-06 55.8 48 58.3
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 4.6e-06 55.8 48 58.3
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 4.6e-06 55.8 140 31.4
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 6.0e-06 55.5 140 31.4


User provided reference genes

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