Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI20938 Sapria himalayana HOM05D001656 ORTHO05D003489 2.9e-87 325.1 153 100.0
Cfa020712 Carpinus fangiana HOM05D001656 ORTHO05D003489 4.2e-54 214.9 139 71.9
Haze_19010 Corylus avellana HOM05D001656 ORTHO05D003489 5.5e-54 214.5 135 73.3
Prupe.1G542900 Prunus persica HOM05D001656 ORTHO05D003489 5.5e-54 214.5 141 71.6
QL12p040546 Quercus lobata HOM05D001656 ORTHO05D003489 6.1e-53 211.1 139 69.1
MD15G1398300 Malus domestica HOM05D001656 ORTHO05D003489 2.3e-52 209.1 143 70.6
CiPaw.15G153400 Carya illinoinensis HOM05D001656 ORTHO05D003489 2.0e-51 206.1 139 69.1
MD08G1211000 Malus domestica HOM05D001656 ORTHO05D003489 4.4e-51 204.9 141 70.2
Manes.03G069648 Manihot esculenta HOM05D001656 ORTHO05D003489 3.1e-49 198.7 135 69.6
TWI56G0670 Tripterygium wilfordii HOM05D001656 ORTHO05D003489 3.1e-49 198.7 135 68.9
Duzib093G0139 Durio zibethinus HOM05D001656 ORTHO05D003489 4.1e-49 198.4 135 66.7
Thecc.08G080200 Theobroma cacao HOM05D001656 ORTHO05D003489 9.1e-49 197.2 135 65.9
ClCG08G009120 Citrullus lanatus HOM05D001656 ORTHO05D003489 2.0e-48 196.1 140 65.7
MELO3C026510.2 Cucumis melo HOM05D001656 ORTHO05D003489 2.0e-48 196.1 140 65.7
CsaV3_6G036010 Cucumis sativus L. HOM05D001656 ORTHO05D003489 2.0e-48 196.1 140 65.7
PGR031G1306 Punica granatum HOM05D001656 ORTHO05D003489 2.0e-48 196.1 135 65.2
Sed0023766 Sechium edule HOM05D001656 ORTHO05D003489 2.7e-48 195.7 140 65.0
COL.COLO4_35358 Corchorus olitorius HOM05D001656 ORTHO05D003489 3.5e-48 195.3 135 65.2
Gohir.A06G028500 Gossypium hirsutum HOM05D001656 ORTHO05D003489 4.5e-48 194.9 135 62.2
CANSAT25G1280 Cannabis sativa HOM05D001656 ORTHO05D003489 5.9e-48 194.5 135 65.2
Gohir.D06G027300 Gossypium hirsutum HOM05D001656 ORTHO05D003489 1.0e-47 193.7 135 62.2
Gorai.010G030400 Gossypium raimondii HOM05D001656 ORTHO05D003489 1.0e-47 193.7 135 62.2
TWI36G0018 Tripterygium wilfordii HOM05D001656 ORTHO05D003489 1.3e-47 193.4 135 67.4
Duzib116G0138 Durio zibethinus HOM05D001656 ORTHO05D003489 2.2e-47 192.6 135 65.2
Eucgr.F02184 Eucalyptus grandis HOM05D001656 ORTHO05D003489 2.9e-47 192.2 141 63.1
Gohir.D01G112700 Gossypium hirsutum HOM05D001656 ORTHO05D003489 1.1e-46 190.3 135 60.7
Gorai.002G137500 Gossypium raimondii HOM05D001656 ORTHO05D003489 1.1e-46 190.3 135 60.7
Gohir.A01G125100 Gossypium hirsutum HOM05D001656 ORTHO05D003489 4.2e-46 188.3 135 60.0
Aa31LG2G10790 Aethionema arabicum HOM05D001656 ORTHO05D003489 7.2e-46 187.6 139 66.2
THA.LOC104816780 Tarenaya hassleriana HOM05D001656 ORTHO05D003489 9.4e-46 187.2 139 64.0
THA.LOC104820058 Tarenaya hassleriana HOM05D001656 ORTHO05D003489 2.1e-45 186.0 144 61.1
MBI17_g13522_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D003489 4.7e-45 184.9 141 66.0
RcHm_v2.0_Chr7g0232361 Rosa chinensis HOM05D001656 ORTHO05D003489 6.1e-45 184.5 138 68.1
Carub.0002s0620 Capsella rubella HOM05D001656 ORTHO05D003489 1.8e-44 183.0 139 64.0
TAR250G0004 Trochodendron aralioides HOM05D001656 ORTHO05D003489 2.3e-44 182.6 139 64.0
AT1G58350 Arabidopsis thaliana HOM05D001656 ORTHO05D003489 1.2e-43 180.3 139 62.6
Thhalv10006833m.g Eutrema salsugineum HOM05D001656 ORTHO05D003489 1.5e-43 179.9 139 62.6
FvH4_5g33540 Fragaria vesca HOM05D001656 ORTHO05D003489 1.5e-43 179.9 143 65.7
FAN04G0452 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.5e-43 179.9 142 66.2
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.5e-43 179.9 143 65.7
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 3.4e-43 178.7 143 65.7
AL1G20690 Arabidopsis lyrata HOM05D001656 ORTHO05D003489 5.7e-43 177.9 139 61.2
Aqoxy6G00378 Aquilegia oxysepala HOM05D001656 ORTHO05D003489 9.8e-43 177.2 106 74.5
AL2G17870 Arabidopsis lyrata HOM05D001656 ORTHO05D003489 9.8e-43 177.2 139 62.6
AT1G09980 Arabidopsis thaliana HOM05D001656 ORTHO05D003489 9.8e-43 177.2 139 60.4
Sp1g08640 Schrenkiella parvula HOM05D001656 ORTHO05D003489 9.8e-43 177.2 139 61.2
CARHR010100 Cardamine hirsuta HOM05D001656 ORTHO05D003489 1.7e-42 176.4 139 60.4
vmacro14265 Vaccinium macrocarpon HOM05D001656 ORTHO05D003489 1.7e-42 176.4 109 72.5
Actinidia11666 Actinidia chinensis HOM05D001656 ORTHO05D003489 2.2e-42 176.0 127 68.5
TAR625G1477 Trochodendron aralioides HOM05D001656 ORTHO05D003489 2.2e-42 176.0 139 61.9
GSVIVG01029697001 Vitis vinifera HOM05D001656 ORTHO05D003489 3.7e-42 175.3 142 61.3
BcaC07g41848 Brassica carinata HOM05D001656 ORTHO05D003489 4.9e-42 174.9 141 59.6
BolC8t52452H Brassica oleracea HOM05D001656 ORTHO05D003489 4.9e-42 174.9 141 59.6
Glyma.17G191900 Glycine max HOM05D001656 ORTHO05D003489 4.9e-42 174.9 109 72.5
Actinidia23982 Actinidia chinensis HOM05D001656 ORTHO05D003489 8.3e-42 174.1 127 67.7
BcaC05g24823 Brassica carinata HOM05D001656 ORTHO05D003489 8.3e-42 174.1 140 59.3
Migut.D01892 Erythranthe guttata HOM05D001656 ORTHO05D003489 8.3e-42 174.1 114 69.3
arahy.Tifrunner.gnm1.ann1.EW8P9I Arachis hypogaea HOM05D001656 ORTHO05D003489 1.4e-41 173.3 114 69.3
BcaC04g22145 Brassica carinata HOM05D001656 ORTHO05D003489 1.4e-41 173.3 138 61.6
C09p22870 Brassica napus HOM05D001656 ORTHO05D003489 1.4e-41 173.3 138 61.6
BolC9t55207H Brassica oleracea HOM05D001656 ORTHO05D003489 1.4e-41 173.3 138 61.6
A09p18330 Brassica napus HOM05D001656 ORTHO05D003489 1.8e-41 172.9 139 61.9
BraA09t37464Z Brassica rapa HOM05D001656 ORTHO05D003489 1.8e-41 172.9 139 61.9
arahy.Tifrunner.gnm1.ann1.MCUW0T Arachis hypogaea HOM05D001656 ORTHO05D003489 3.1e-41 172.2 109 71.6
CSS0033770 Camellia sinensis var. sinensis HOM05D001656 ORTHO05D003489 3.1e-41 172.2 106 74.5
Dinv18177 Davidia involucrata HOM05D001656 ORTHO05D003489 3.1e-41 172.2 146 59.6
Carub.0001s0941 Capsella rubella HOM05D001656 ORTHO05D003489 4.1e-41 171.8 139 59.0
Medtr1g007420 Medicago truncatula HOM05D001656 ORTHO05D003489 5.4e-41 171.4 121 62.0
Sabra19G0088800 Salix brachista HOM05D001656 ORTHO05D003489 5.4e-41 171.4 100 76.0
C08p49170 Brassica napus HOM05D001656 ORTHO05D003489 7.0e-41 171.0 141 58.9
A06p06680 Brassica napus HOM05D001656 ORTHO05D003489 9.2e-41 170.6 141 58.9
A09p65220 Brassica napus HOM05D001656 ORTHO05D003489 9.2e-41 170.6 140 60.0
BraA06t23882Z Brassica rapa HOM05D001656 ORTHO05D003489 9.2e-41 170.6 141 58.9
BraA09t41867Z Brassica rapa HOM05D001656 ORTHO05D003489 9.2e-41 170.6 140 60.0
Potri.019G077700 Populus trichocarpa HOM05D001656 ORTHO05D003489 9.2e-41 170.6 100 76.0
C05p08150 Brassica napus HOM05D001656 ORTHO05D003489 1.2e-40 170.2 139 59.7
BolC5t29567H Brassica oleracea HOM05D001656 ORTHO05D003489 1.2e-40 170.2 139 59.7
EL10Ac3g05154 Beta vulgaris HOM05D001656 ORTHO05D003489 2.0e-40 169.5 135 63.0
AUR62005970 Chenopodium quinoa HOM05D001656 ORTHO05D003489 2.0e-40 169.5 137 59.9
AUR62028100 Chenopodium quinoa HOM05D001656 ORTHO05D003489 2.0e-40 169.5 137 59.9
Lj1g0003271 Lotus japonicus HOM05D001656 ORTHO05D003489 2.0e-40 169.5 107 69.2
Nn1g06077 Nelumbo nucifera HOM05D001656 ORTHO05D003489 2.0e-40 169.5 144 59.0
SGA_v2.0_scaffold114G31863 Striga asiatica HOM05D001656 ORTHO05D003489 2.0e-40 169.5 130 63.1
Sp2g05240 Schrenkiella parvula HOM05D001656 ORTHO05D003489 2.7e-40 169.1 139 61.9
ECA248G3915 Erigeron canadensis HOM05D001656 ORTHO05D003489 3.5e-40 168.7 101 78.2
Migut.I00076 Erythranthe guttata HOM05D001656 ORTHO05D003489 3.5e-40 168.7 98 75.5
CAN.G853.38 Capsicum annuum HOM05D001656 ORTHO05D003489 4.5e-40 168.3 109 71.6
PSO541G1368 Papaver somniferum HOM05D001656 ORTHO05D003489 4.5e-40 168.3 142 59.2
PSO675G3868 Papaver somniferum HOM05D001656 ORTHO05D003489 4.5e-40 168.3 142 59.2
SalBow3G0204 Salvia bowleyana HOM05D001656 ORTHO05D003489 4.5e-40 168.3 109 67.9
Cpa.g.sc2.34 Carica papaya HOM05D001656 ORTHO05D003489 5.9e-40 167.9 147 55.8
Sabra13G0090300 Salix brachista HOM05D001656 ORTHO05D003489 5.9e-40 167.9 100 75.0
Gohir.D06G026800 Gossypium hirsutum HOM05D001656 ORTHO05D003489 7.7e-40 167.5 135 58.5
Thhalv10023308m.g Eutrema salsugineum HOM05D001656 ORTHO05D003489 1.0e-39 167.2 141 58.9
HanXRQChr11g0344231 Helianthus annuus HOM05D001656 ORTHO05D003489 1.0e-39 167.2 116 69.0
Potri.013G104400 Populus trichocarpa HOM05D001656 ORTHO05D003489 1.0e-39 167.2 100 75.0
Cc04_g16130 Coffea canephora HOM05D001656 ORTHO05D003489 1.7e-39 166.4 106 67.0
Nitab4.5_0002875g0070 Nicotiana tabacum HOM05D001656 ORTHO05D003489 1.7e-39 166.4 100 73.0
VMungo0647G0957 Vigna mungo HOM05D001656 ORTHO05D003489 1.7e-39 166.4 106 70.8
Peaxi162Scf00017g02238 Petunia axillaris HOM05D001656 ORTHO05D003489 2.9e-39 165.6 100 72.0
PGSC0003DMG400024574 Solanum tuberosum HOM05D001656 ORTHO05D003489 2.9e-39 165.6 104 70.2
CDE06G2450 Ceratophyllum demersum HOM05D001656 ORTHO05D003489 5.0e-39 164.9 139 55.4
Phvul.001G063050 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 5.0e-39 164.9 100 75.0
Aa31LG1G4900 Aethionema arabicum HOM05D001656 ORTHO05D003489 6.6e-39 164.5 146 55.5
Atru.chr6.982 Acer truncatum HOM05D001656 ORTHO05D003489 8.6e-39 164.1 109 67.0
Rhsim01G0193900 Rhododendron simsii HOM05D001656 ORTHO05D003489 8.6e-39 164.1 121 63.6
Sc13g0010550 Simmondsia chinensis HOM05D001656 ORTHO05D003489 8.6e-39 164.1 101 73.3
Solyc03g113640.4 Solanum lycopersicum HOM05D001656 ORTHO05D003489 8.6e-39 164.1 100 72.0
Sopen03g032680 Solanum pennellii HOM05D001656 ORTHO05D003489 8.6e-39 164.1 100 72.0
Nn5g28753 Nelumbo nucifera HOM05D001656 ORTHO05D003489 1.5e-38 163.3 100 74.0
Ciclev10000310m.g Citrus clementina HOM05D001656 ORTHO05D003489 1.9e-38 162.9 105 71.4
Psat2g123240 Pisum sativum HOM05D001656 ORTHO05D003489 1.9e-38 162.9 104 67.3
ATR0820G193 Amborella trichopoda HOM05D001656 ORTHO05D003489 2.5e-38 162.5 144 58.3
Ca_00099_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 2.5e-38 162.5 135 60.7
SalBow5G0425 Salvia bowleyana HOM05D001656 ORTHO05D003489 2.5e-38 162.5 98 71.4
Lsat_1_v5_gn_1_69641 Lactuca sativa HOM05D001656 ORTHO05D003489 3.3e-38 162.2 102 71.6
Hund09724 Selenicereus undatus HOM05D001656 ORTHO05D003489 5.6e-38 161.4 117 65.0
VMungo0540G0892 Vigna mungo HOM05D001656 ORTHO05D003489 5.6e-38 161.4 143 55.9
CSS0003613 Camellia sinensis var. sinensis HOM05D001656 ORTHO05D003489 7.3e-38 161.0 119 63.9
HPP92_009299 Vanilla planifolia HOM05D001656 ORTHO05D003489 7.3e-38 161.0 137 56.2
VMungo0251G2951 Vigna mungo HOM05D001656 ORTHO05D003489 9.5e-38 160.6 145 57.9
Lalb_Chr11g0064671 Lupinus albus HOM05D001656 ORTHO05D003489 1.2e-37 160.2 108 65.7
TPR.G12394 Trifolium pratense HOM05D001656 ORTHO05D003489 1.2e-37 160.2 108 65.7
Cpa.g.sc160.10 Carica papaya HOM05D001656 ORTHO05D003489 2.8e-37 159.1 104 67.3
unitig_744.g24393 Utricularia gibba HOM05D001656 ORTHO05D003489 2.8e-37 159.1 100 71.0
Manes.18G053500 Manihot esculenta HOM05D001656 ORTHO05D003489 6.1e-37 157.9 104 68.3
Glyma.08G183400 Glycine max HOM05D001656 ORTHO05D003489 8.0e-37 157.5 141 56.0
Medtr3g110690 Medicago truncatula HOM05D001656 ORTHO05D003489 8.0e-37 157.5 99 71.7
Ciclev10000361m.g Citrus clementina HOM05D001656 ORTHO05D003489 1.8e-36 156.4 106 69.8
Glyma.08G077100 Glycine max HOM05D001656 ORTHO05D003489 1.8e-36 156.4 147 55.8
Lalb_Chr18g0060791 Lupinus albus HOM05D001656 ORTHO05D003489 1.8e-36 156.4 140 60.0
MSTRG.4393 Avicennia marina HOM05D001656 ORTHO05D003489 2.3e-36 156.0 104 66.3
Phvul.002G204000 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 2.3e-36 156.0 136 60.3
Glyma.15G049300 Glycine max HOM05D001656 ORTHO05D003489 3.0e-36 155.6 135 57.0
Glyma.04G088300 Glycine max HOM05D001656 ORTHO05D003489 5.2e-36 154.8 104 66.3
Lj6g0015393 Lotus japonicus HOM05D001656 ORTHO05D003489 1.2e-35 153.7 126 60.3
Phvul.009G113900 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 1.5e-35 153.3 108 65.7
Lalb_Chr23g0269821 Lupinus albus HOM05D001656 ORTHO05D003489 2.0e-35 152.9 105 63.8
Psat7g095680 Pisum sativum HOM05D001656 ORTHO05D003489 9.8e-35 150.6 134 57.5
Atru.chr13.918 Acer truncatum HOM05D001656 ORTHO05D003489 1.3e-34 150.2 108 66.7
Glyma.06G090300 Glycine max HOM05D001656 ORTHO05D003489 1.3e-34 150.2 106 64.2
Phvul.006G210700 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 1.3e-34 150.2 106 64.2
Zm00001eb407660 Zea mays HOM05D001656 ORTHO05D003489 2.2e-34 149.4 103 63.1
Ca_18321_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 3.7e-34 148.7 140 54.3
Lalb_Chr07g0189321 Lupinus albus HOM05D001656 ORTHO05D003489 4.9e-34 148.3 148 51.4
TPR.G23822 Trifolium pratense HOM05D001656 ORTHO05D003489 1.1e-33 147.1 135 55.6
Manes.05G186300 Manihot esculenta HOM05D001656 ORTHO05D003489 3.2e-33 145.6 104 62.5
VMungo1309G1010 Vigna mungo HOM05D001656 ORTHO05D003489 3.2e-33 145.6 107 63.6
Lj4g0026988 Lotus japonicus HOM05D001656 ORTHO05D003489 4.1e-33 145.2 146 53.4
Medtr4g094378 Medicago truncatula HOM05D001656 ORTHO05D003489 5.4e-33 144.8 140 53.6
Os12g0164800 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D003489 5.4e-33 144.8 98 64.3
arahy.Tifrunner.gnm1.ann1.AB9876 Arachis hypogaea HOM05D001656 ORTHO05D003489 1.3e-31 140.2 132 50.8
arahy.Tifrunner.gnm1.ann1.0H8WKK Arachis hypogaea HOM05D001656 ORTHO05D003489 5.0e-31 138.3 132 50.0
Gohir.D05G217800 Gossypium hirsutum HOM05D001656 ORTHO05D003489 1.1e-30 137.1 101 59.4
Gorai.009G224600 Gossypium raimondii HOM05D001656 ORTHO05D003489 1.1e-30 137.1 101 59.4
arahy.Tifrunner.gnm1.ann1.G0H17A Arachis hypogaea HOM05D001656 ORTHO05D003489 1.5e-30 136.7 96 65.6
SMO353G0380 Selaginella moellendorffii HOM05D001656 ORTHO05D003489 1.0e-23 114.0 97 55.7
AagrBONN_evm.TU.Sc2ySwM_362.276 Anthoceros agrestis HOM05D001656 ORTHO05D003489 8.6e-23 110.9 106 50.0
ECA238G2565 Erigeron canadensis HOM05D001656 ORTHO05D003489 7.3e-22 107.8 80 65.0
Ah.07g204550 Amaranthus hybridus HOM05D001656 ORTHO05D003489 8.9e-20 100.9 87 59.8
TPR.G24499 Trifolium pratense HOM05D001656 ORTHO05D003489 2.9e-18 95.9 61 65.6
Gohir.A05G214500 Gossypium hirsutum HOM05D001656 ORTHO05D003489 3.7e-18 95.5 77 53.2
Oeu041590.1 Olea europaea HOM05D001656 ORTHO05D003489 4.1e-17 92.0 84 54.8
SEGI_30798 Sequoiadendron giganteum HOM05D001656 ORTHO05D003489 1.0e-15 87.4 67 56.7
Nitab4.5_0000642g0240 Nicotiana tabacum HOM05D001656 ORTHO05D003489 2.5e-14 82.8 48 77.1
DCAR_005504 Daucus carota HOM05D001656 ORTHO05D003489 3.3e-14 82.4 47 72.3
arahy.Tifrunner.gnm1.ann1.GQ6E1B Arachis hypogaea HOM05D001656 ORTHO05D003489 5.6e-14 81.6 89 47.2
arahy.Tifrunner.gnm1.ann1.Z08EY9 Arachis hypogaea HOM05D001656 ORTHO05D003489 5.6e-14 81.6 53 66.0
CBR_g50209 Chara braunii HOM05D001656 ORTHO05D003489 3.6e-13 79.0 74 48.6
Zm00001eb202450 Zea mays HOM05D001656 ORTHO05D003489 1.9e-09 66.6 51 56.9
MBI17_g25901_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D003489 3.0e-07 59.3 55 52.7


User provided reference genes

Program Settings