Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI20758 Sapria himalayana HOM05D000085 ORTHO05D044014 2.4e-46 188.3 85 100.0
Manes.06G013000 Manihot esculenta HOM05D000085 ORTHO05D008953 3.9e-17 91.3 63 60.3
Sabra01G0131900 Salix brachista HOM05D000085 ORTHO05D008953 1.9e-16 89.0 63 61.9
Manes.14G164800 Manihot esculenta HOM05D000085 ORTHO05D008953 7.4e-16 87.0 63 57.1
Potri.001G160300 Populus trichocarpa HOM05D000085 ORTHO05D008953 1.6e-15 85.9 63 58.7
TWI75G0480 Tripterygium wilfordii HOM05D000085 ORTHO05D008953 6.9e-14 80.5 61 54.1
Nn2g12177 Nelumbo nucifera HOM05D000085 ORTHO05D008953 9.0e-14 80.1 64 53.1
CANSAT35G1999 Cannabis sativa HOM05D000085 ORTHO05D008953 4.5e-13 77.8 61 50.8
Atru.chr10.380 Acer truncatum HOM05D000085 ORTHO05D008953 5.9e-13 77.4 65 52.3
Migut.M02006 Erythranthe guttata HOM05D000085 ORTHO05D008953 7.7e-13 77.0 61 50.8
Oeu025261.1 Olea europaea HOM05D000085 ORTHO05D008953 1.3e-12 76.3 67 50.7
Haze_13961 Corylus avellana HOM05D001705 ORTHO05D008953 1.7e-12 75.9 83 42.2
Gohir.D01G132000 Gossypium hirsutum HOM05D000085 ORTHO05D008953 2.2e-12 75.5 61 52.5
Cfa008074 Carpinus fangiana HOM05D000085 ORTHO05D008953 2.9e-12 75.1 61 50.8
CiPaw.03G014000 Carya illinoinensis HOM05D000085 ORTHO05D008953 3.8e-12 74.7 61 52.5
Gohir.A01G141000 Gossypium hirsutum HOM05D000054 ORTHO05D008953 3.8e-12 74.7 61 52.5
vmacro03549 Vaccinium macrocarpon HOM05D000085 ORTHO05D008953 3.8e-12 74.7 67 50.7
COL.COLO4_18028 Corchorus olitorius HOM05D000085 ORTHO05D008953 5.0e-12 74.3 61 52.5
TAR374G0981 Trochodendron aralioides HOM05D000085 ORTHO05D008953 5.0e-12 74.3 72 45.8
Gorai.002G163600 Gossypium raimondii HOM05D000085 ORTHO05D008953 8.5e-12 73.6 61 50.8
ATR0582G018 Amborella trichopoda HOM05D000085 ORTHO05D008953 1.1e-11 73.2 69 42.0
CAN.G883.5 Capsicum annuum HOM05D000085 ORTHO05D008953 1.1e-11 73.2 61 49.2
Sopen02g017500 Solanum pennellii HOM05D000085 ORTHO05D008953 1.1e-11 73.2 61 49.2
MSTRG.6630 Avicennia marina HOM05D000085 ORTHO05D008953 1.4e-11 72.8 61 49.2
Nitab4.5_0000973g0060 Nicotiana tabacum HOM05D000085 ORTHO05D008953 1.4e-11 72.8 61 49.2
Solyc02g068370.3 Solanum lycopersicum HOM05D000085 ORTHO05D008953 1.9e-11 72.4 61 49.2
CDE06G0780 Ceratophyllum demersum HOM05D000085 ORTHO05D008953 2.5e-11 72.0 65 44.6
Rhsim13G0133000 Rhododendron simsii HOM05D000085 ORTHO05D008953 2.5e-11 72.0 61 49.2
VMungo1309G0417 Vigna mungo HOM05D000085 ORTHO05D008953 2.5e-11 72.0 61 49.2
PGSC0003DMG400009417 Solanum tuberosum HOM05D000085 ORTHO05D008953 4.2e-11 71.2 64 46.9
Duzib132G0516 Durio zibethinus HOM05D000085 ORTHO05D008953 5.5e-11 70.9 67 47.8
MBI07_g11052_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D008953 5.5e-11 70.9 63 49.2
Thecc.02G004500 Theobroma cacao HOM05D000085 ORTHO05D008953 7.2e-11 70.5 67 47.8
HPP92_018403 Vanilla planifolia HOM05D000085 ORTHO05D008953 7.2e-11 70.5 72 41.7
Actinidia22427 Actinidia chinensis HOM05D000360 ORTHO05D008953 9.4e-11 70.1 61 47.5
Nitab4.5_0000443g0230 Nicotiana tabacum HOM05D000085 ORTHO05D008953 9.4e-11 70.1 61 47.5
DCAR_004343 Daucus carota HOM05D000085 ORTHO05D008953 1.2e-10 69.7 64 46.9
Lj2C343G11 Lonicera japonica HOM05D000085 ORTHO05D008953 1.2e-10 69.7 61 47.5
Lj6g0004710 Lotus japonicus HOM05D000085 ORTHO05D008953 1.2e-10 69.7 62 50.0
Cc09_g05290 Coffea canephora HOM05D000085 ORTHO05D008953 1.6e-10 69.3 63 47.6
QL09p001792 Quercus lobata HOM05D000085 ORTHO05D008953 1.6e-10 69.3 61 49.2
GSVIVG01014051001 Vitis vinifera HOM05D000085 ORTHO05D008953 1.6e-10 69.3 67 46.3
Phvul.009G224500 Phaseolus vulgaris HOM05D000085 ORTHO05D008953 2.1e-10 68.9 61 47.5
Psat1g135360 Pisum sativum HOM05D000085 ORTHO05D008953 2.1e-10 68.9 61 45.9
Sc24g0003000 Simmondsia chinensis HOM05D000085 ORTHO05D008953 2.1e-10 68.9 61 45.9
Ciclev10014781m.g Citrus clementina HOM05D000085 ORTHO05D008953 2.7e-10 68.6 61 47.5
Medtr2g043380 Medicago truncatula HOM05D000085 ORTHO05D008953 2.7e-10 68.6 61 45.9
TPR.G20646 Trifolium pratense HOM05D000085 ORTHO05D008953 2.7e-10 68.6 61 45.9
Glyma.09G072500 Glycine max HOM05D000085 ORTHO05D008953 3.6e-10 68.2 61 45.9
Ca_02239_v3 Cicer arietinum L. HOM05D000085 ORTHO05D008953 4.6e-10 67.8 67 43.3
Peaxi162Scf00981g00018 Petunia axillaris HOM05D000085 ORTHO05D008953 4.6e-10 67.8 61 47.5
THA.LOC104817991 Tarenaya hassleriana HOM05D000085 ORTHO05D008953 6.1e-10 67.4 63 44.4
Glyma.15G181400 Glycine max HOM05D000085 ORTHO05D008953 7.9e-10 67.0 61 45.9
arahy.Tifrunner.gnm1.ann1.TK4N04 Arachis hypogaea HOM05D000085 ORTHO05D008953 1.4e-09 66.2 61 44.3
BolC3t21380H Brassica oleracea HOM05D000085 ORTHO05D008953 1.4e-09 66.2 61 42.6
arahy.Tifrunner.gnm1.ann1.H0CTPA Arachis hypogaea HOM05D000085 ORTHO05D008953 1.8e-09 65.9 61 44.3
Carub.0001s4127 Capsella rubella HOM05D000085 ORTHO05D008953 3.0e-09 65.1 63 42.9
SGA_v2.0_scaffold175G39333 Striga asiatica HOM05D000085 ORTHO05D008953 3.0e-09 65.1 63 47.6
AT1G52310 Arabidopsis thaliana HOM05D000085 ORTHO05D008953 3.9e-09 64.7 61 42.6
Lsat_1_v5_gn_5_104700 Lactuca sativa HOM05D000085 ORTHO05D008953 5.1e-09 64.3 56 50.0
Sp1g38840 Schrenkiella parvula HOM05D000085 ORTHO05D008953 5.1e-09 64.3 61 42.6
CDE02G0289 Ceratophyllum demersum HOM05D000085 ORTHO05D008953 6.7e-09 63.9 61 42.6
Prupe.7G025300 Prunus persica HOM05D000085 ORTHO05D008953 6.7e-09 63.9 61 41.0
CsaV3_1G010120 Cucumis sativus L. HOM05D000085 ORTHO05D008953 8.8e-09 63.5 61 41.0
FAN28G0133 Fragaria x ananassa HOM05D000085 ORTHO05D008953 8.8e-09 63.5 61 41.0
RcHm_v2.0_Chr3g0495371 Rosa chinensis HOM05D000085 ORTHO05D008953 1.1e-08 63.2 61 42.6
Sed0022041 Sechium edule HOM05D000085 ORTHO05D008953 1.1e-08 63.2 62 38.7
C03p90570 Brassica napus HOM05D000085 ORTHO05D008953 1.5e-08 62.8 61 41.0
MELO3C002402.2 Cucumis melo HOM05D000085 ORTHO05D008953 1.5e-08 62.8 61 41.0
FAN26G3227 Fragaria x ananassa HOM05D000085 ORTHO05D008953 1.5e-08 62.8 61 39.3
AL1G60470 Arabidopsis lyrata HOM05D000085 ORTHO05D008953 2.5e-08 62.0 61 42.6
AUR62040484 Chenopodium quinoa HOM05D000085 ORTHO05D044014 2.5e-08 62.0 61 42.6
FvH4_1g29430 Fragaria vesca HOM05D000085 ORTHO05D008953 2.5e-08 62.0 61 41.0
FAN19G1601 Fragaria x ananassa HOM05D000085 ORTHO05D008953 2.5e-08 62.0 61 41.0
Lalb_Chr08g0232761 Lupinus albus HOM05D000085 ORTHO05D008953 3.3e-08 61.6 61 42.6
Aqoxy2G03832 Aquilegia oxysepala HOM05D000085 ORTHO05D008953 4.3e-08 61.2 63 41.3
PGR042G0251 Punica granatum HOM05D000085 ORTHO05D008953 5.7e-08 60.8 67 38.8
Eucgr.E04320 Eucalyptus grandis HOM05D000085 ORTHO05D008953 7.4e-08 60.5 61 36.1
Thhalv10011366m.g Eutrema salsugineum HOM05D000085 ORTHO05D008953 9.7e-08 60.1 61 39.3
Mapoly1925s0001 Marchantia polymorpha HOM05D000085 ORTHO05D008953 9.7e-08 60.1 81 37.0
A08p02190 Brassica napus HOM05D000085 ORTHO05D008953 2.2e-07 58.9 61 37.7
ECA234G1499 Erigeron canadensis HOM05D000085 ORTHO05D008953 4.8e-07 57.8 58 43.1
Os01g0104000 Oryza sativa ssp. japonica HOM05D000085 ORTHO05D008953 1.1e-06 56.6 72 36.1
MD12G1015200 Malus domestica HOM05D000085 ORTHO05D008953 1.4e-06 56.2 61 39.3
CARHR042420 Cardamine hirsuta HOM05D000085 ORTHO05D008953 1.8e-06 55.8 57 36.8
MD14G1013200 Malus domestica HOM05D000085 ORTHO05D008953 1.8e-06 55.8 61 39.3
SEGI_22295 Sequoiadendron giganteum HOM05D025984 ORTHO05D008953 4.1e-06 54.7 61 37.7
Nn1g07283 Nelumbo nucifera HOM05D000085 ORTHO05D008953 9.1e-06 53.5 55 41.8


User provided reference genes

Program Settings