Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 1.1e-101 373.2 184 100.0
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 1.1e-40 170.6 179 54.7
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 3.9e-38 162.2 180 51.7
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 2.1e-36 156.4 180 47.8
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 2.1e-36 156.4 180 50.0
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 4.8e-36 155.2 180 47.8
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 6.2e-36 154.8 180 50.0
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 2.4e-35 152.9 181 47.5
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 5.3e-35 151.8 179 49.2
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 9.0e-35 151.0 182 48.4
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.6e-34 149.4 180 45.0
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 3.4e-34 149.1 177 48.6
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 2.2e-33 146.4 183 47.5
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 2.9e-33 146.0 180 44.4
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 2.9e-33 146.0 180 48.9
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 3.8e-33 145.6 181 48.1
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 6.5e-33 144.8 175 48.0
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 1.1e-32 144.1 182 47.3
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 1.4e-32 143.7 180 48.3
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 1.4e-32 143.7 180 48.3
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 1.9e-32 143.3 180 47.2
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 2.5e-32 142.9 181 46.4
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 2.5e-32 142.9 182 46.7
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 3.2e-32 142.5 180 45.0
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 4.2e-32 142.1 182 46.7
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 4.2e-32 142.1 180 47.2
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 7.2e-32 141.4 180 45.0
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 7.2e-32 141.4 179 46.9
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 9.3e-32 141.0 184 45.7
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 9.3e-32 141.0 180 43.3
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 1.2e-31 140.6 180 43.9
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 1.2e-31 140.6 180 43.9
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 2.7e-31 139.4 181 45.9
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 2.7e-31 139.4 185 45.4
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 3.5e-31 139.0 181 43.1
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 7.9e-31 137.9 182 45.1
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 1.0e-30 137.5 178 47.8
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 1.0e-30 137.5 179 47.5
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 1.0e-30 137.5 189 46.6
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 1.0e-30 137.5 185 44.9
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 1.8e-30 136.7 179 44.7
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 2.3e-30 136.3 181 44.2
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 2.3e-30 136.3 183 44.8
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 3.0e-30 136.0 180 42.8
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 3.9e-30 135.6 173 44.5
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 6.7e-30 134.8 181 43.6
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 1.1e-29 134.0 178 43.8
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 1.1e-29 134.0 181 44.2
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 3.3e-29 132.5 180 45.6
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 7.4e-29 131.3 178 44.4
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 9.7e-29 131.0 180 41.7
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 1.3e-28 130.6 180 42.8
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 1.3e-28 130.6 172 46.5
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 2.8e-28 129.4 181 43.1
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 3.7e-28 129.0 175 43.4
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 3.7e-28 129.0 183 43.2
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 4.8e-28 128.6 180 42.8
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 4.8e-28 128.6 180 42.2
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 4.8e-28 128.6 176 42.6
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 6.3e-28 128.3 180 42.8
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 8.2e-28 127.9 180 40.6
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 8.2e-28 127.9 181 42.5
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 8.2e-28 127.9 181 43.1
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.4e-27 127.1 180 41.1
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.4e-27 127.1 180 41.7
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 6.9e-27 124.8 180 40.6
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 1.5e-26 123.6 186 42.5
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 1.5e-26 123.6 177 42.4
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 3.4e-26 122.5 181 41.4
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 5.9e-26 121.7 181 39.2
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 7.7e-26 121.3 179 40.2
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 7.7e-26 121.3 179 40.2
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 1.0e-25 120.9 174 42.5
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 1.3e-25 120.6 171 43.3
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 2.2e-25 119.8 173 45.1
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 5.0e-25 118.6 171 44.4
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 5.0e-25 118.6 171 44.4
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 5.0e-25 118.6 180 41.1
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 6.5e-25 118.2 190 41.6
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 8.5e-25 117.9 171 43.9
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 8.5e-25 117.9 171 45.0
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 1.4e-24 117.1 181 42.0
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 1.4e-24 117.1 160 44.4
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 1.4e-24 117.1 191 40.8
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 2.5e-24 116.3 171 42.1
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 5.5e-24 115.2 180 41.7
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 7.2e-24 114.8 179 39.1
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 7.2e-24 114.8 171 40.9
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 1.6e-23 113.6 178 42.1
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 2.7e-23 112.8 179 39.7
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 4.6e-23 112.1 179 40.8
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 4.6e-23 112.1 169 40.2
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 7.9e-23 111.3 183 40.4
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 1.0e-22 110.9 175 38.3
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 1.4e-22 110.5 178 37.6
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 1.8e-22 110.2 180 38.9
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 2.3e-22 109.8 172 42.4
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 2.3e-22 109.8 178 39.3
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 8.8e-22 107.8 172 41.3
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 1.1e-21 107.5 179 40.8
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 1.5e-21 107.1 185 37.3
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 1.5e-21 107.1 186 38.2
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 1.5e-21 107.1 184 40.8
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 2.0e-21 106.7 177 39.5
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 2.0e-21 106.7 186 37.1
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 4.3e-21 105.5 176 39.2
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 4.3e-21 105.5 174 40.2
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 1.3e-20 104.0 178 38.8
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 1.7e-20 103.6 181 38.7
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 1.7e-20 103.6 186 36.6
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 3.7e-20 102.4 186 36.6
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 3.7e-20 102.4 179 35.2
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 3.7e-20 102.4 186 36.6
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 3.7e-20 102.4 179 35.2
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 6.3e-20 101.7 181 40.3
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 8.2e-20 101.3 179 37.4
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 1.1e-19 100.9 177 35.0
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 1.1e-19 100.9 181 37.6
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 2.4e-19 99.8 180 35.6
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 2.4e-19 99.8 180 35.6
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 3.1e-19 99.4 186 34.9
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 3.1e-19 99.4 190 38.4
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 3.1e-19 99.4 180 37.2
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 9.1e-19 97.8 116 43.1
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 3.4e-18 95.9 179 35.8
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 7.7e-18 94.7 175 37.1
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 1.4e-16 90.5 183 37.7
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 7.2e-16 88.2 110 45.5
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 8.2e-12 74.7 115 44.3
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 3.5e-10 69.3 194 28.4
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 9.4e-08 61.2 185 30.3
Pp3c8_11610 Physcomitrium patens HOM05D005835 ORTHO05D007187 2.1e-07 60.1 178 27.5


User provided reference genes

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