Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 0.0e+00 1773.1 875 100.0
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 8.6e-152 542.0 531 55.2
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 4.3e-151 539.7 535 56.1
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 1.2e-150 538.1 534 55.2
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 3.6e-150 536.6 531 54.8
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 4.7e-150 536.2 533 55.9
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 2.4e-149 533.9 532 55.5
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 4.0e-149 533.1 535 55.7
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 1.2e-148 531.6 526 56.1
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 3.4e-148 530.0 532 55.1
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 4.4e-148 529.6 532 55.5
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 9.9e-148 528.5 531 54.4
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 1.3e-147 528.1 529 55.8
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 2.2e-147 527.3 536 54.9
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 4.2e-146 523.1 530 54.5
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 7.1e-146 522.3 544 52.8
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 3.5e-145 520.0 531 54.2
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 1.3e-144 518.1 535 52.1
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 3.0e-144 516.9 550 53.8
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 8.7e-144 515.4 529 53.7
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 1.1e-143 515.0 533 53.1
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 4.3e-143 513.1 536 52.8
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 9.6e-143 511.9 535 54.2
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 1.3e-142 511.5 534 52.2
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 1.3e-142 511.5 534 52.2
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 2.1e-142 510.8 529 54.8
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 2.1e-142 510.8 534 54.1
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 2.8e-142 510.4 533 52.7
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 2.8e-142 510.4 534 52.1
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 2.8e-142 510.4 534 52.1
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 4.8e-142 509.6 534 52.6
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 6.2e-142 509.2 534 52.2
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 8.1e-142 508.8 547 52.5
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 8.1e-142 508.8 531 52.7
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 1.1e-141 508.4 538 54.5
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.4e-141 508.1 536 52.6
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 1.8e-141 507.7 531 52.7
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 1.8e-141 507.7 536 53.9
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 2.4e-141 507.3 532 53.4
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 3.1e-141 506.9 536 52.4
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 3.1e-141 506.9 528 53.0
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 4.0e-141 506.5 530 53.0
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 4.0e-141 506.5 529 52.6
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 4.0e-141 506.5 533 53.5
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 4.0e-141 506.5 539 52.3
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 1.5e-140 504.6 529 52.7
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 1.5e-140 504.6 527 53.7
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 3.4e-140 503.4 532 53.4
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 4.4e-140 503.1 529 52.4
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 7.6e-140 502.3 541 51.6
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 9.9e-140 501.9 531 52.4
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 1.3e-139 501.5 531 53.5
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 1.7e-139 501.1 532 53.4
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 1.7e-139 501.1 536 53.9
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 2.2e-139 500.7 536 51.5
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 2.9e-139 500.4 540 51.5
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 2.9e-139 500.4 534 52.2
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 4.9e-139 499.6 532 52.6
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 4.9e-139 499.6 523 52.6
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 8.4e-139 498.8 533 52.0
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 4.2e-138 496.5 540 51.7
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 5.4e-138 496.1 536 51.1
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 5.4e-138 496.1 527 52.4
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 9.3e-138 495.4 533 52.3
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 1.6e-137 494.6 535 50.7
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 2.7e-137 493.8 537 50.8
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 4.6e-137 493.0 541 51.4
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 5.1e-136 489.6 527 52.2
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 8.7e-136 488.8 531 52.0
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 8.7e-136 488.8 527 51.4
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 8.7e-136 488.8 532 50.8
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 1.1e-135 488.4 534 51.3
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.5e-135 488.0 533 52.2
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 1.5e-135 488.0 538 51.9
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 1.9e-135 487.6 526 51.9
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 3.3e-135 486.9 533 50.5
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 7.3e-135 485.7 604 47.0
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 2.1e-134 484.2 533 51.6
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 2.1e-134 484.2 533 51.2
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 4.8e-134 483.0 526 51.1
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 3.1e-133 480.3 525 51.8
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 6.9e-133 479.2 545 49.5
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 3.4e-132 476.9 547 49.9
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 3.4e-132 476.9 526 50.8
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 7.6e-132 475.7 526 50.0
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 6.4e-131 472.6 532 50.4
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 1.1e-130 471.9 529 51.0
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 1.9e-130 471.1 541 49.9
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 1.9e-130 471.1 532 50.4
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 2.4e-130 470.7 552 48.6
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 2.4e-130 470.7 583 48.2
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 2.4e-130 470.7 529 51.0
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 3.2e-130 470.3 530 50.2
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 3.2e-130 470.3 570 47.2
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 4.2e-130 469.9 548 48.2
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 7.1e-130 469.2 529 51.6
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 9.3e-130 468.8 529 49.3
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-129 468.4 550 48.0
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 1.6e-129 468.0 530 49.4
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 4.6e-129 466.5 544 47.6
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 7.9e-129 465.7 525 49.3
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 3.0e-128 463.8 523 49.5
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 6.7e-128 462.6 550 48.4
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 6.7e-128 462.6 529 50.1
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 4.3e-127 459.9 566 47.7
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 5.6e-127 459.5 531 48.4
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 1.3e-126 458.4 542 49.3
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 4.8e-126 456.4 555 46.8
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 8.1e-126 455.7 544 47.1
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 1.2e-124 451.8 530 48.3
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 3.4e-124 450.3 535 46.0
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 2.2e-123 447.6 547 46.3
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 1.4e-122 444.9 529 48.0
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 7.9e-121 439.1 518 47.7
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 1.8e-120 438.0 537 47.3
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 3.9e-120 436.8 532 47.7
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 8.7e-120 435.6 539 46.0
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.1e-119 435.3 537 46.9
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 1.6e-118 431.4 532 44.7
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 4.1e-117 426.8 533 45.2
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 6.9e-117 426.0 551 45.6
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 1.0e-115 422.2 539 45.5
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.9e-114 417.9 544 45.2
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 5.5e-114 416.4 552 43.1
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 3.4e-108 397.1 656 39.8
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 5.5e-106 389.8 670 38.7
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 3.8e-99 367.1 535 43.4
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 5.5e-98 363.2 539 43.8
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 6.7e-88 329.7 544 40.6
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.0e-84 318.2 503 39.6
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 6.5e-83 313.2 555 37.1
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 7.5e-79 299.7 479 39.0
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.5e-74 285.4 490 36.5
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.7e-70 271.9 488 35.9
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 5.9e-68 263.5 578 33.2
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 1.8e-61 241.9 531 34.7
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 4.4e-39 167.5 171 49.1
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 7.4e-18 97.1 109 53.2
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 9.6e-18 96.7 110 51.8
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 4.8e-17 94.4 72 66.7
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 8.1e-17 93.6 86 62.8
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 3.1e-16 91.7 109 50.5
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 2.2e-14 85.5 110 49.1
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 2.9e-14 85.1 194 32.0
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 6.4e-14 84.0 80 57.5
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 1.5e-07 62.8 67 47.8
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 1.7e-06 59.3 51 58.8


User provided reference genes

Program Settings