Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 1.3e-60 236.1 111 100.0
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-24 116.7 79 72.2
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 4.3e-24 114.8 78 71.8
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 9.6e-24 113.6 99 58.6
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 9.0e-22 107.1 74 71.6
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 3.9e-17 91.7 101 50.5
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 1.1e-14 83.6 81 59.3
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 1.4e-14 83.2 102 49.0
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.4e-14 83.2 102 49.0
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.4e-14 83.2 102 49.0
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 1.8e-14 82.8 81 56.8
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 1.8e-14 82.8 81 58.0
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 3.1e-14 82.0 83 54.2
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 3.1e-14 82.0 83 54.2
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 3.1e-14 82.0 83 54.2
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 3.1e-14 82.0 83 54.2
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.1e-14 82.0 81 59.3
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 3.1e-14 82.0 83 54.2
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 4.1e-14 81.6 81 58.0
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 5.3e-14 81.3 83 54.2
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.9e-14 80.9 100 52.0
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 9.0e-14 80.5 81 58.0
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 9.0e-14 80.5 82 57.3
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.2e-13 80.1 97 50.5
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.2e-13 80.1 81 58.0
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.5e-13 79.7 81 58.0
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 1.5e-13 79.7 81 58.0
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.5e-13 79.7 81 58.0
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.5e-13 79.7 81 58.0
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 1.5e-13 79.7 81 58.0
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 1.5e-13 79.7 81 58.0
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 2.0e-13 79.3 82 57.3
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 2.6e-13 79.0 81 56.8
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 2.6e-13 79.0 83 53.0
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 5.9e-13 77.8 81 55.6
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.0e-12 77.0 83 54.2
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 2.2e-12 75.9 81 54.3
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 2.9e-12 75.5 109 48.6
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 5.0e-12 74.7 81 55.6
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 1.1e-11 73.6 81 51.9
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 1.1e-11 73.6 81 51.9
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 1.1e-11 73.6 81 51.9
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 1.1e-11 73.6 81 51.9
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 1.1e-11 73.6 81 51.9
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 1.1e-11 73.6 81 51.9
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 1.9e-11 72.8 81 53.1
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 1.9e-11 72.8 81 53.1
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.9e-11 72.8 81 54.3
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 2.5e-11 72.4 83 51.8
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 2.5e-11 72.4 83 51.8
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 4.2e-11 71.6 102 46.1
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 9.4e-11 70.5 83 50.6
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 9.4e-11 70.5 83 50.6
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 9.4e-11 70.5 83 50.6
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 1.2e-10 70.1 83 53.0
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 1.2e-10 70.1 83 53.0
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 1.2e-10 70.1 83 53.0
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 1.2e-10 70.1 83 53.0
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 1.2e-10 70.1 83 53.0
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 1.6e-10 69.7 73 52.1
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 2.7e-10 68.9 83 48.2
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 2.7e-10 68.9 83 48.2
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 2.7e-10 68.9 83 48.2
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 2.7e-10 68.9 83 48.2
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 2.7e-10 68.9 83 49.4
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 2.7e-10 68.9 81 53.1
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 2.7e-10 68.9 81 51.9
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 7.9e-10 67.4 83 49.4
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 1.0e-09 67.0 80 51.2
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 1.4e-09 66.6 81 51.9
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.8e-09 66.2 80 50.0
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.8e-09 66.2 80 50.0
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.8e-09 66.2 81 50.6
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 3.0e-09 65.5 81 50.6
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 3.9e-09 65.1 83 47.0
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.9e-09 65.1 81 51.9
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.1e-09 64.7 68 57.4
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 5.1e-09 64.7 79 51.9
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 7.4e-08 60.8 81 50.6
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 9.7e-08 60.5 48 66.7
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 2.2e-07 59.3 80 50.0
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 4.8e-07 58.2 43 60.5
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.4e-06 56.6 72 48.6


User provided reference genes

Program Settings