Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 8.8e-93 343.6 170 100.0
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 6.4e-43 177.9 150 64.7
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 8.3e-43 177.6 151 64.2
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 1.1e-42 177.2 150 62.7
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 5.4e-42 174.9 144 66.7
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 5.4e-42 174.9 144 66.7
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 7.0e-42 174.5 144 64.6
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 2.7e-41 172.6 144 66.0
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 2.7e-41 172.6 144 66.0
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 2.7e-41 172.6 144 66.0
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 2.7e-41 172.6 144 66.0
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 2.7e-41 172.6 144 66.0
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 7.8e-41 171.0 150 62.0
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 1.0e-40 170.6 150 60.7
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.3e-40 170.2 150 62.0
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 1.3e-40 170.2 150 62.0
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 1.3e-40 170.2 150 62.0
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.9e-40 168.7 150 60.7
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 5.0e-40 168.3 150 61.3
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 6.6e-40 167.9 150 62.7
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 8.6e-40 167.5 150 62.0
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 8.6e-40 167.5 165 58.2
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 1.1e-39 167.2 150 61.3
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 1.9e-39 166.4 140 66.4
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 9.5e-39 164.1 144 63.9
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 9.5e-39 164.1 144 63.9
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 9.5e-39 164.1 150 61.3
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 1.6e-38 163.3 150 60.0
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 6.2e-38 161.4 144 62.5
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.1e-37 160.6 150 60.7
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 1.4e-37 160.2 152 59.2
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 1.4e-37 160.2 152 59.2
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 1.4e-37 160.2 152 59.2
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 1.4e-37 160.2 152 59.2
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 1.8e-37 159.8 146 61.0
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 6.8e-37 157.9 145 61.4
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 8.9e-37 157.5 152 58.6
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 8.9e-37 157.5 152 58.6
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 8.9e-37 157.5 152 58.6
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 8.9e-37 157.5 147 57.1
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 8.9e-37 157.5 147 57.1
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 8.9e-37 157.5 147 57.1
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 8.9e-37 157.5 147 57.1
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 8.9e-37 157.5 147 57.1
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 8.9e-37 157.5 147 57.1
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 1.7e-35 153.3 142 61.3
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 1.7e-35 153.3 152 57.9
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 2.2e-35 152.9 144 60.4
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 2.2e-35 152.9 150 58.0
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 4.9e-35 151.8 150 57.3
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 4.9e-35 151.8 150 57.3
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 8.3e-35 151.0 133 61.7
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 8.3e-35 151.0 133 61.7
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 8.3e-35 151.0 137 59.9
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 1.4e-34 150.2 145 60.0
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 2.4e-34 149.4 144 58.3
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 4.1e-34 148.7 149 58.4
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 7.8e-33 144.4 150 53.3
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.3e-32 143.7 133 60.2
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 1.3e-32 143.7 133 60.2
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 3.9e-32 142.1 127 62.2
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 3.9e-32 142.1 127 62.2
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 3.9e-32 142.1 150 57.3
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 2.8e-30 136.0 147 54.4
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.8e-28 128.3 150 50.7
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.4e-26 121.7 135 55.6
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.0e-24 117.5 118 55.9
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 1.7e-24 116.7 102 59.8
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 8.1e-22 107.8 150 47.3
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 6.9e-21 104.8 101 58.4
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 8.9e-21 104.4 105 58.1
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 3.4e-20 102.4 105 59.0
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 3.4e-20 102.4 75 68.0
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 9.9e-20 100.9 143 44.8
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.7e-19 100.1 75 66.7
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 4.2e-18 95.5 112 49.1
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 3.5e-17 92.4 83 60.2
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 6.0e-17 91.7 100 56.0
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.0e-17 91.7 88 60.2
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.0e-16 90.9 88 59.1
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 1.0e-16 90.9 102 53.9
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 3.0e-16 89.4 132 43.9
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.9e-16 89.0 71 66.2
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 8.7e-16 87.8 143 44.1
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 1.5e-15 87.0 75 61.3
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.6e-15 85.1 105 51.4
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 1.3e-14 84.0 130 44.6
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 3.6e-14 82.4 57 70.2
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 4.0e-13 79.0 53 71.7
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 4.0e-13 79.0 53 71.7
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 4.0e-13 79.0 53 71.7
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.5e-12 75.5 119 46.2
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 4.6e-09 65.5 46 65.2
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 3.0e-08 62.8 42 69.0
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.1e-07 60.8 42 64.3
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 2.5e-07 59.7 44 63.6
SHI32118 Sapria himalayana HOM05D003430 ORTHO05D004809 2.1e-06 56.6 52 57.7


User provided reference genes

Program Settings