Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 5.0e-84 314.3 148 100.0
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 9.5e-43 177.2 213 48.4
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 1.6e-42 176.4 213 47.9
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 2.8e-42 175.6 210 49.0
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 2.8e-42 175.6 210 49.0
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 2.8e-42 175.6 210 49.0
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 2.8e-42 175.6 210 49.0
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 2.8e-42 175.6 210 49.0
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 2.8e-42 175.6 210 49.0
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 2.8e-42 175.6 210 49.0
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 2.8e-42 175.6 210 49.0
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 2.8e-42 175.6 210 49.0
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 2.8e-42 175.6 210 49.0
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 3.6e-42 175.3 209 48.8
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 8.0e-42 174.1 210 49.0
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 8.0e-42 174.1 189 52.9
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 1.8e-41 172.9 206 48.5
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 6.8e-41 171.0 210 48.1
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 6.8e-41 171.0 210 48.1
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 8.9e-41 170.6 206 47.6
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 8.9e-41 170.6 184 52.2
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 1.5e-40 169.9 210 48.1
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 1.5e-40 169.9 210 48.6
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 2.6e-40 169.1 210 48.1
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 4.4e-40 168.3 210 48.1
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 4.4e-40 168.3 188 52.1
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 4.4e-40 168.3 210 47.6
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 5.7e-40 167.9 210 47.6
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 7.5e-40 167.5 209 47.8
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.3e-39 166.8 209 48.8
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 2.8e-39 165.6 210 47.6
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 1.4e-38 163.3 208 47.1
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 1.4e-38 163.3 210 47.6
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 1.4e-38 163.3 210 47.1
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 1.4e-38 163.3 210 47.1
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 7.0e-38 161.0 208 46.6
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 1.2e-37 160.2 210 46.2
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 1.2e-37 160.2 210 46.2
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 1.6e-37 159.8 210 46.7
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 3.5e-37 158.7 210 46.7
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 5.0e-36 154.8 197 47.7
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 1.1e-35 153.7 197 45.7
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 1.1e-35 153.7 197 45.7
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 1.9e-35 152.9 195 46.2
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 1.4e-33 146.7 194 45.4
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 1.4e-33 146.7 194 45.4
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 1.8e-33 146.4 197 44.7
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 1.8e-33 146.4 194 44.8
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 6.8e-33 144.4 194 44.8
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 8.9e-33 144.1 200 43.5
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 8.3e-31 137.5 197 44.2
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 1.9e-30 136.3 212 40.6
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 2.4e-30 136.0 188 44.7
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 3.2e-30 135.6 80 78.8
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 5.4e-30 134.8 80 77.5
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.6e-29 133.3 187 43.9
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.6e-29 133.3 187 43.9
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 6.0e-29 131.3 195 45.1
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.7e-28 129.8 79 74.7
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 1.1e-25 120.6 183 42.1
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.4e-24 115.5 164 40.9
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.4e-24 115.2 176 40.9
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 4.9e-23 111.7 158 46.2
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 6.0e-21 104.8 179 39.1
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 3.9e-20 102.1 147 42.9
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 3.9e-20 102.1 64 73.4
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 6.6e-20 101.3 64 71.9
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 3.3e-19 99.0 60 76.7
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 1.6e-18 96.7 56 80.4
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 1.4e-17 93.6 62 72.6
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 1.8e-17 93.2 214 29.9
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 3.7e-15 85.5 158 38.0
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 2.4e-14 82.8 64 64.1
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 2.4e-14 82.8 64 64.1
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 9.2e-14 80.9 63 61.9
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.6e-13 80.1 165 36.4
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 1.6e-13 80.1 62 62.9
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.7e-13 79.3 57 64.9
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 6.0e-13 78.2 44 79.5
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 6.0e-13 78.2 44 79.5
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 7.8e-13 77.8 44 77.3
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 1.0e-12 77.4 44 79.5
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 1.0e-12 77.4 44 79.5
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 1.7e-12 76.6 56 67.9
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.9e-12 75.5 44 75.0
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 5.1e-12 75.1 71 57.7
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 6.6e-12 74.7 157 36.3
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.6e-12 74.7 44 77.3
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.1e-11 73.9 48 72.9
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 2.5e-11 72.8 43 76.7
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 3.3e-11 72.4 50 66.0
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 4.3e-11 72.0 52 67.3
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 7.3e-11 71.2 43 74.4
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 7.3e-11 71.2 155 35.5
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 7.3e-11 71.2 155 35.5
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 1.6e-10 70.1 38 76.3
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 8.1e-10 67.8 44 75.0
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 1.8e-09 66.6 47 68.1
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 2.4e-09 66.2 59 57.6
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 4.0e-09 65.5 49 59.2
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 5.2e-09 65.1 58 62.1
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 2.0e-08 63.2 59 55.9
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.2e-07 59.7 42 59.5
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 7.1e-06 54.7 32 75.0
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 7.1e-06 54.7 30 76.7


User provided reference genes

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