Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI20512 Sapria himalayana HOM05D009845 ORTHO05D010624 2.5e-119 432.2 224 100.0
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 2.3e-24 116.7 81 75.3
MSTRG.25414 Avicennia marina HOM05D009845 ORTHO05D010624 7.4e-23 111.7 78 75.6
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-22 110.9 76 76.3
Oeu033677.1 Olea europaea HOM05D009845 ORTHO05D010624 2.1e-22 110.2 76 77.6
CANSAT16G0049 Cannabis sativa HOM05D009845 ORTHO05D010624 1.4e-21 107.5 76 73.7
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 1.4e-21 107.5 76 75.0
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 1.4e-21 107.5 76 75.0
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 3.1e-21 106.3 76 75.0
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 9.0e-21 104.8 76 72.4
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 1.2e-20 104.4 76 72.4
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 1.9e-18 97.1 87 60.9
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.6e-17 92.8 69 76.8
Nitab4.5_0000687g0270 Nicotiana tabacum HOM05D009845 ORTHO05D010624 4.6e-17 92.4 68 72.1
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.1e-15 87.8 64 73.4
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 1.1e-15 87.8 74 67.6
Potri.004G049600 Populus trichocarpa HOM05D009845 ORTHO05D010624 2.4e-13 80.1 63 68.3
Sabra04G0031300 Salix brachista HOM05D009845 ORTHO05D010624 4.1e-13 79.3 81 54.3
RcHm_v2.0_Chr6g0257981 Rosa chinensis HOM05D022571 ORTHO05D010624 4.5e-12 75.9 79 58.2
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 8.5e-11 71.6 50 76.0
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 1.1e-10 71.2 46 78.3
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 7.2e-10 68.6 50 74.0
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 7.2e-10 68.6 50 74.0
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 7.2e-10 68.6 50 74.0
Lsat_1_v5_gn_1_129701 Lactuca sativa HOM05D009845 ORTHO05D010624 1.0e-08 64.7 52 59.6
HanXRQChr01g0004171 Helianthus annuus HOM05D029082 ORTHO05D010624 1.8e-08 63.9 54 59.3
HanXRQChr16g0506281 Helianthus annuus HOM05D029082 ORTHO05D010624 2.3e-08 63.5 54 57.4
Medtr3g078610 Medicago truncatula HOM05D009845 ORTHO05D010624 2.3e-08 63.5 63 52.4
ECA248G2152 Erigeron canadensis HOM05D029082 ORTHO05D010624 3.0e-08 63.2 51 58.8
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 3.9e-08 62.8 63 52.4
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 5.1e-08 62.4 63 50.8
TPR.G11219 Trifolium pratense HOM05D009845 ORTHO05D010624 5.1e-08 62.4 63 50.8
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 8.8e-08 61.6 83 44.6
Psat5g113560 Pisum sativum HOM05D009845 ORTHO05D010624 8.8e-08 61.6 74 47.3
arahy.Tifrunner.gnm1.ann1.3S39J7 Arachis hypogaea HOM05D009845 ORTHO05D010624 2.0e-07 60.5 63 47.6
arahy.Tifrunner.gnm1.ann1.L3Y80W Arachis hypogaea HOM05D009845 ORTHO05D010624 2.0e-07 60.5 63 47.6
arahy.Tifrunner.gnm1.ann1.W8CL8V Arachis hypogaea HOM05D009845 ORTHO05D010624 2.0e-07 60.5 63 47.6
arahy.Tifrunner.gnm1.ann1.XL5EFA Arachis hypogaea HOM05D009845 ORTHO05D010624 2.0e-07 60.5 63 47.6
arahy.Tifrunner.gnm1.ann1.XS77WZ Arachis hypogaea HOM05D009845 ORTHO05D010624 2.0e-07 60.5 63 47.6
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.6e-07 60.1 37 83.8
SHI33643 Sapria himalayana HOM05D005794 ORTHO05D010624 2.6e-07 60.1 35 74.3
TWI39G0104 Tripterygium wilfordii HOM05D011069 ORTHO05D010624 2.6e-07 60.1 48 60.4
Lalb_Chr08g0236141 Lupinus albus HOM05D009845 ORTHO05D010624 4.4e-07 59.3 63 47.6
Lalb_Chr23g0273071 Lupinus albus HOM05D009845 ORTHO05D010624 4.4e-07 59.3 63 47.6
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 2.2e-06 57.0 41 65.9
VMungo1309G2800 Vigna mungo HOM05D009845 ORTHO05D010624 4.8e-06 55.8 64 48.4
Carub.0004s2920 Capsella rubella HOM05D011069 ORTHO05D010624 6.3e-06 55.5 53 52.8
Glyma.04G178000 Glycine max HOM05D009845 ORTHO05D010624 6.3e-06 55.5 91 38.5
Phvul.009G182700 Phaseolus vulgaris HOM05D009845 ORTHO05D010624 6.3e-06 55.5 90 40.0


User provided reference genes

Program Settings