Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI20412 Sapria himalayana HOM05D004595 ORTHO05D005800 2.5e-121 438.7 216 100.0
Potri.003G082600 Populus trichocarpa HOM05D004595 ORTHO05D005800 3.3e-60 235.7 200 60.0
Sabra03G0053300 Salix brachista HOM05D004595 ORTHO05D005800 7.3e-60 234.6 188 61.2
Potri.001G151900 Populus trichocarpa HOM05D004595 ORTHO05D005800 3.6e-59 232.3 199 58.8
Sabra01G0121600 Salix brachista HOM05D004595 ORTHO05D005800 1.4e-58 230.3 199 58.8
Manes.01G087300 Manihot esculenta HOM05D004595 ORTHO05D005800 7.5e-57 224.6 187 59.9
Atru.chr9.1225 Acer truncatum HOM05D004595 ORTHO05D005800 1.7e-56 223.4 197 56.3
TAR375G0350 Trochodendron aralioides HOM05D004595 ORTHO05D005800 5.4e-55 218.4 199 56.8
QL12p009065 Quercus lobata HOM05D004595 ORTHO05D005800 3.9e-53 212.2 180 58.3
RcHm_v2.0_Chr1g0348071 Rosa chinensis HOM05D004595 ORTHO05D005800 3.3e-52 209.1 174 58.0
Sp7g17210 Schrenkiella parvula HOM05D004595 ORTHO05D005800 1.6e-51 206.8 172 57.0
Ciclev10018937m.g Citrus clementina HOM05D004595 ORTHO05D005800 4.7e-51 205.3 173 58.4
CiPaw.11G069600 Carya illinoinensis HOM05D004595 ORTHO05D005800 8.1e-51 204.5 192 53.1
FAN03G1267 Fragaria x ananassa HOM05D004595 ORTHO05D005800 8.1e-51 204.5 180 55.6
RcHm_v2.0_Chr7g0205281 Rosa chinensis HOM05D004595 ORTHO05D005800 1.8e-50 203.4 172 57.0
GSVIVG01018293001 Vitis vinifera HOM05D004595 ORTHO05D005800 1.8e-50 203.4 190 54.2
FvH4_7g10370 Fragaria vesca HOM05D004595 ORTHO05D005800 2.3e-50 203.0 174 56.9
FAN01G2950 Fragaria x ananassa HOM05D004595 ORTHO05D005800 2.3e-50 203.0 180 55.0
FAN06G0382 Fragaria x ananassa HOM05D004595 ORTHO05D005800 2.3e-50 203.0 174 56.9
FAN06G4364 Fragaria x ananassa HOM05D004595 ORTHO05D005800 2.3e-50 203.0 174 56.9
Lj2C227T10 Lonicera japonica HOM05D004595 ORTHO05D005800 2.3e-50 203.0 187 54.5
FAN10G2859 Fragaria x ananassa HOM05D004595 ORTHO05D005800 3.1e-50 202.6 180 54.4
AL7G37750 Arabidopsis lyrata HOM05D004595 ORTHO05D005800 4.0e-50 202.2 172 56.4
PGR031G0135 Punica granatum HOM05D004595 ORTHO05D005800 4.0e-50 202.2 190 50.5
AT4G16970 Arabidopsis thaliana HOM05D004595 ORTHO05D005800 6.8e-50 201.4 172 57.0
Dinv28866 Davidia involucrata HOM05D004595 ORTHO05D005800 6.8e-50 201.4 176 58.0
Actinidia31498 Actinidia chinensis HOM05D004595 ORTHO05D005800 8.9e-50 201.1 189 52.9
Cpa.g.sc42.59 Carica papaya HOM05D004595 ORTHO05D005800 8.9e-50 201.1 196 52.6
Nn1g08279 Nelumbo nucifera HOM05D004595 ORTHO05D005800 1.2e-49 200.7 177 56.5
PSO063G2875 Papaver somniferum HOM05D004595 ORTHO05D005800 1.5e-49 200.3 194 51.0
Prupe.5G058600 Prunus persica HOM05D004595 ORTHO05D005800 1.5e-49 200.3 172 57.0
ATR0665G378 Amborella trichopoda HOM05D004595 ORTHO05D005800 2.6e-49 199.5 178 56.2
Thecc.03G242900 Theobroma cacao HOM05D004595 ORTHO05D005800 2.6e-49 199.5 180 55.6
A01p20330 Brassica napus HOM05D004595 ORTHO05D005800 3.4e-49 199.1 172 56.4
BraA01t01963Z Brassica rapa HOM05D004595 ORTHO05D005800 3.4e-49 199.1 172 56.4
CSS0020169 Camellia sinensis var. sinensis HOM05D004595 ORTHO05D005800 3.4e-49 199.1 204 51.0
Aqoxy3G02685 Aquilegia oxysepala HOM05D004595 ORTHO05D005800 4.4e-49 198.7 178 55.1
C01p25500 Brassica napus HOM05D004595 ORTHO05D005800 4.4e-49 198.7 172 55.8
BcaNung00138 Brassica carinata HOM05D004595 ORTHO05D005800 5.8e-49 198.4 178 54.5
BolC1t02501H Brassica oleracea HOM05D004595 ORTHO05D005800 5.8e-49 198.4 172 55.8
Cc08_g11470 Coffea canephora HOM05D004595 ORTHO05D005800 7.6e-49 198.0 189 52.9
Gohir.A11G028800 Gossypium hirsutum HOM05D004595 ORTHO05D005800 1.3e-48 197.2 169 58.0
TWI60G0774 Tripterygium wilfordii HOM05D004595 ORTHO05D005800 1.3e-48 197.2 171 56.1
COL.COLO4_07512 Corchorus olitorius HOM05D004595 ORTHO05D005800 1.7e-48 196.8 172 55.8
Oeu037379.1 Olea europaea HOM05D004595 ORTHO05D005800 1.7e-48 196.8 189 50.8
Rhsim07G0118500 Rhododendron simsii HOM05D004595 ORTHO05D005800 1.7e-48 196.8 187 51.9
BcaC09g50431 Brassica carinata HOM05D004595 ORTHO05D005800 2.2e-48 196.4 172 55.2
CAN.G761.19 Capsicum annuum HOM05D004595 ORTHO05D005800 2.2e-48 196.4 196 50.0
Duzib205G1146 Durio zibethinus HOM05D004595 ORTHO05D005800 2.2e-48 196.4 180 55.6
Gohir.A08G165500 Gossypium hirsutum HOM05D004595 ORTHO05D005800 2.2e-48 196.4 180 55.0
Gohir.D08G184200 Gossypium hirsutum HOM05D004595 ORTHO05D005800 2.2e-48 196.4 180 55.0
Gorai.004G193500 Gossypium raimondii HOM05D004595 ORTHO05D005800 2.2e-48 196.4 180 55.0
ClCG06G002450 Citrullus lanatus HOM05D004595 ORTHO05D005800 2.9e-48 196.1 197 51.8
Rhsim07G0118300 Rhododendron simsii HOM05D004595 ORTHO05D005800 3.8e-48 195.7 187 51.9
Sed0025323 Sechium edule HOM05D004595 ORTHO05D005800 3.8e-48 195.7 181 54.7
PSO782G5445 Papaver somniferum HOM05D004595 ORTHO05D005800 4.9e-48 195.3 191 51.8
CsaV3_6G008680 Cucumis sativus L. HOM05D004595 ORTHO05D005800 6.4e-48 194.9 197 50.8
Carub.0007s2444 Capsella rubella HOM05D004595 ORTHO05D005800 1.9e-47 193.4 172 54.7
QL04p029927 Quercus lobata HOM05D004595 ORTHO05D005800 1.9e-47 193.4 195 50.3
Thhalv10024346m.g Eutrema salsugineum HOM05D004595 ORTHO05D005800 2.4e-47 193.0 174 55.2
ECA240G1307 Erigeron canadensis HOM05D004595 ORTHO05D005800 3.2e-47 192.6 203 49.3
FAN13G0010 Fragaria x ananassa HOM05D004595 ORTHO05D005800 3.2e-47 192.6 171 55.0
FAN13G1547 Fragaria x ananassa HOM05D004595 ORTHO05D005800 3.2e-47 192.6 171 55.0
Aa31LG2G13050 Aethionema arabicum HOM05D004595 ORTHO05D005800 4.1e-47 192.2 162 56.8
FvH4_5g20210 Fragaria vesca HOM05D004595 ORTHO05D005800 4.1e-47 192.2 171 54.4
FAN18G0798 Fragaria x ananassa HOM05D004595 ORTHO05D005800 4.1e-47 192.2 171 54.4
MD07G1109800 Malus domestica HOM05D004595 ORTHO05D005800 4.1e-47 192.2 172 56.4
Hund14485 Selenicereus undatus HOM05D004595 ORTHO05D005800 4.1e-47 192.2 197 49.7
Sc01g0008080 Simmondsia chinensis HOM05D004595 ORTHO05D005800 5.4e-47 191.8 178 52.8
FAN08G0032 Fragaria x ananassa HOM05D004595 ORTHO05D005800 7.1e-47 191.4 171 54.4
CDE12G0423 Ceratophyllum demersum HOM05D004595 ORTHO05D005800 9.2e-47 191.0 180 51.1
vmacro14128 Vaccinium macrocarpon HOM05D004595 ORTHO05D005800 1.2e-46 190.7 179 53.1
THA.LOC104807924 Tarenaya hassleriana HOM05D004595 ORTHO05D005800 2.1e-46 189.9 172 53.5
Gorai.007G029800 Gossypium raimondii HOM05D004595 ORTHO05D005800 3.5e-46 189.1 170 55.3
Gohir.D11G027300 Gossypium hirsutum HOM05D004595 ORTHO05D005800 7.8e-46 188.0 170 55.3
MD06G1048400 Malus domestica HOM05D004595 ORTHO05D005800 1.0e-45 187.6 171 53.8
CANSAT21G1292 Cannabis sativa HOM05D004595 ORTHO05D005800 1.7e-45 186.8 178 50.6
MD04G1051700 Malus domestica HOM05D004595 ORTHO05D005800 1.7e-45 186.8 172 54.1
HPP92_025687 Vanilla planifolia HOM05D004595 ORTHO05D005800 1.7e-45 186.8 177 52.0
CANSAT25G1576 Cannabis sativa HOM05D004595 ORTHO05D005800 2.3e-45 186.4 189 49.2
Lsat_1_v5_gn_6_93760 Lactuca sativa HOM05D004595 ORTHO05D005800 2.3e-45 186.4 175 53.1
Sopen08g026500 Solanum pennellii HOM05D004595 ORTHO05D005800 2.3e-45 186.4 194 46.4
CDE04G0694 Ceratophyllum demersum HOM05D004595 ORTHO05D005800 3.0e-45 186.0 182 48.9
Solyc08g077990.3 Solanum lycopersicum HOM05D004595 ORTHO05D005800 3.9e-45 185.7 194 45.9
HanXRQChr13g0418201 Helianthus annuus HOM05D004595 ORTHO05D005800 6.6e-45 184.9 172 53.5
PGSC0003DMG400026251 Solanum tuberosum HOM05D004595 ORTHO05D005800 6.6e-45 184.9 171 50.3
Ca_14806_v3 Cicer arietinum L. HOM05D004595 ORTHO05D005800 8.6e-45 184.5 177 50.3
Migut.E00822 Erythranthe guttata HOM05D004595 ORTHO05D005800 8.6e-45 184.5 168 53.6
Nitab4.5_0007628g0030 Nicotiana tabacum HOM05D004595 ORTHO05D005800 8.6e-45 184.5 193 46.6
Lalb_Chr12g0210541 Lupinus albus HOM05D004595 ORTHO05D005800 1.5e-44 183.7 197 46.7
SGA_v2.0_scaffold20G09239 Striga asiatica HOM05D004595 ORTHO05D005800 1.6e-43 180.3 160 55.0
Nitab4.5_0000500g0120 Nicotiana tabacum HOM05D004595 ORTHO05D005800 2.1e-43 179.9 193 45.1
SalBow1G8649 Salvia bowleyana HOM05D004595 ORTHO05D005800 2.1e-43 179.9 172 51.7
EL10Ac5g12285 Beta vulgaris HOM05D004595 ORTHO05D005800 2.8e-43 179.5 181 50.3
SalBow1G1528 Salvia bowleyana HOM05D004595 ORTHO05D005800 4.7e-43 178.7 172 51.2
MBI04_g28359_MAGBIO Magnolia biondii HOM05D004595 ORTHO05D005800 6.2e-43 178.3 192 49.0
DCAR_004592 Daucus carota HOM05D004595 ORTHO05D005800 1.1e-42 177.6 199 46.7
Dinv44053 Davidia involucrata HOM05D004595 ORTHO05D005800 1.4e-42 177.2 162 54.9
MSTRG.1950 Avicennia marina HOM05D004595 ORTHO05D005800 4.0e-42 175.6 173 50.9
Glyma.03G109300 Glycine max HOM05D004595 ORTHO05D005800 5.2e-42 175.3 168 50.6
Peaxi162Scf00446g00213 Petunia axillaris HOM05D004595 ORTHO05D005800 5.2e-42 175.3 170 49.4
Ah.12g054050 Amaranthus hybridus HOM05D004595 ORTHO05D005800 6.9e-42 174.9 176 48.9
arahy.Tifrunner.gnm1.ann1.F9ZABX Arachis hypogaea HOM05D004595 ORTHO05D005800 6.9e-42 174.9 195 46.7
Lj3g0024575 Lotus japonicus HOM05D004595 ORTHO05D005800 6.9e-42 174.9 195 45.1
arahy.Tifrunner.gnm1.ann1.XA3BYX Arachis hypogaea HOM05D004595 ORTHO05D005800 2.0e-41 173.3 195 46.2
AUR62007157 Chenopodium quinoa HOM05D004595 ORTHO05D005800 3.4e-41 172.6 180 47.8
Medtr8g007150 Medicago truncatula HOM05D004595 ORTHO05D005800 3.4e-41 172.6 173 47.4
AUR62018854 Chenopodium quinoa HOM05D004595 ORTHO05D005800 4.4e-41 172.2 200 44.5
Glyma.07G115800 Glycine max HOM05D004595 ORTHO05D005800 4.4e-41 172.2 168 50.0
Phvul.010G046800 Phaseolus vulgaris HOM05D004595 ORTHO05D005800 1.3e-40 170.6 195 45.1
VMungo0331G1450 Vigna mungo HOM05D004595 ORTHO05D005800 1.7e-40 170.2 195 45.1
Zm00001eb391030 Zea mays HOM05D004595 ORTHO05D005800 1.9e-39 166.8 179 46.9
DCAR_005580 Daucus carota HOM05D004595 ORTHO05D005800 2.3e-37 159.8 171 49.1
TPR.G32138 Trifolium pratense HOM05D004595 ORTHO05D005800 5.1e-37 158.7 173 45.1
SEGI_14133 Sequoiadendron giganteum HOM05D004595 ORTHO05D005800 1.5e-36 157.1 192 42.7
GSVIVG01002113001 Vitis vinifera HOM05D004595 ORTHO05D005800 1.9e-36 156.8 174 47.7
Haze_07975 Corylus avellana HOM05D004595 ORTHO05D005800 4.3e-36 155.6 204 43.6
Oeu054277.1 Olea europaea HOM05D004595 ORTHO05D005800 3.1e-34 149.4 113 60.2
TAR004G0003 Trochodendron aralioides HOM05D004595 ORTHO05D005800 6.9e-34 148.3 146 52.1
FAN10G2341 Fragaria x ananassa HOM05D004595 ORTHO05D005800 9.0e-34 147.9 199 42.2
CSS0009672 Camellia sinensis var. sinensis HOM05D004595 ORTHO05D005800 3.3e-20 102.8 137 43.1
Pp3c24_4600 Physcomitrium patens HOM05D004595 ORTHO05D005800 1.3e-19 100.9 164 34.8
Os10g0563550 Oryza sativa ssp. japonica HOM05D004595 ORTHO05D005800 9.0e-18 94.7 87 48.3
Mapoly0004s0300 Marchantia polymorpha HOM05D004595 ORTHO05D005800 1.9e-15 87.0 156 34.6
Lsat_1_v5_gn_3_85361 Lactuca sativa HOM05D004595 ORTHO05D005800 3.3e-12 76.3 98 41.8
SMO364G0022 Selaginella moellendorffii HOM05D004595 ORTHO05D005800 5.3e-10 68.9 169 31.4
AagrBONN_evm.TU.Sc2ySwM_344.2176 Anthoceros agrestis HOM05D004595 ORTHO05D005800 1.5e-09 67.4 159 30.2
AL7G37770 Arabidopsis lyrata HOM05D004595 ORTHO05D005800 1.4e-07 60.8 34 67.6
Sp1g29110 Schrenkiella parvula HOM05D000084 ORTHO05D000363 1.9e-07 60.5 165 30.3
Hund10079 Selenicereus undatus HOM05D000084 ORTHO05D000363 3.2e-07 59.7 162 29.6
BcaB07g33007 Brassica carinata HOM05D000084 ORTHO05D000363 5.5e-07 58.9 165 29.1
BcaC08g43842 Brassica carinata HOM05D000084 ORTHO05D000363 7.2e-07 58.5 165 28.5
C06p12240 Brassica napus HOM05D000084 ORTHO05D000363 7.2e-07 58.5 165 28.5
BolC6t36368H Brassica oleracea HOM05D000084 ORTHO05D000363 7.2e-07 58.5 165 28.5
CARHR033170 Cardamine hirsuta HOM05D000084 ORTHO05D000363 9.3e-07 58.2 165 27.3
BcaB03g13689 Brassica carinata HOM05D000084 ORTHO05D000363 1.2e-06 57.8 165 30.3
Gorai.009G266100 Gossypium raimondii HOM05D000084 ORTHO05D000363 1.6e-06 57.4 183 27.3
Medtr5g008860 Medicago truncatula HOM05D000084 ORTHO05D000363 1.6e-06 57.4 164 28.7
TPR.G6983 Trifolium pratense HOM05D000084 ORTHO05D000363 1.6e-06 57.4 177 29.9
Gohir.A05G252700 Gossypium hirsutum HOM05D000084 ORTHO05D000363 2.7e-06 56.6 183 26.8
A09p32670 Brassica napus HOM05D000084 ORTHO05D000363 3.6e-06 56.2 165 27.9
BraA09t38806Z Brassica rapa HOM05D000084 ORTHO05D000363 3.6e-06 56.2 165 27.9
BcaC05g27797 Brassica carinata HOM05D000084 ORTHO05D000363 6.1e-06 55.5 165 29.1
A05p24220 Brassica napus HOM05D000084 ORTHO05D000363 6.1e-06 55.5 165 29.1
C05p37930 Brassica napus HOM05D000084 ORTHO05D000363 6.1e-06 55.5 165 29.1
BolC5t32524H Brassica oleracea HOM05D000084 ORTHO05D000363 6.1e-06 55.5 165 29.1
BraA05t21301Z Brassica rapa HOM05D000084 ORTHO05D000363 6.1e-06 55.5 165 29.1
Thhalv10007077m.g Eutrema salsugineum HOM05D000084 ORTHO05D000363 6.1e-06 55.5 165 26.1
Carub.0001s3195 Capsella rubella HOM05D000084 ORTHO05D000363 7.9e-06 55.1 165 29.1


User provided reference genes

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