Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 1.2e-236 822.8 406 100.0
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 2.1e-201 705.7 404 85.9
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 2.3e-200 702.2 410 84.4
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 1.5e-199 699.5 410 83.7
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 3.3e-199 698.4 410 82.0
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 9.7e-199 696.8 406 83.7
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 1.7e-198 696.0 406 84.5
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 3.7e-198 694.9 410 82.7
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 2.4e-197 692.2 405 83.5
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 3.1e-197 691.8 406 83.7
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 4.1e-197 691.4 405 83.7
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 4.1e-197 691.4 405 83.7
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 4.1e-197 691.4 406 84.0
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 5.3e-197 691.0 410 83.2
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 5.3e-197 691.0 405 83.5
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 7.0e-197 690.6 410 83.2
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 7.0e-197 690.6 408 83.6
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 2.0e-196 689.1 423 80.1
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 2.0e-196 689.1 406 82.3
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 2.0e-196 689.1 408 83.1
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 2.7e-196 688.7 410 81.7
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 7.7e-196 687.2 406 83.5
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 1.0e-195 686.8 410 82.7
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 1.7e-195 686.0 410 81.7
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 2.2e-195 685.6 405 82.5
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 2.2e-195 685.6 406 83.5
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 8.5e-195 683.7 410 81.7
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 8.5e-195 683.7 410 82.4
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 3.2e-194 681.8 406 81.8
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 5.5e-194 681.0 406 81.5
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 9.4e-194 680.2 410 80.5
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 1.6e-193 679.5 410 81.0
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 8.0e-193 677.2 406 82.0
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 1.8e-192 676.0 405 82.7
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 4.0e-192 674.9 406 80.8
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 2.6e-191 672.2 410 80.0
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 2.6e-191 672.2 405 80.5
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 3.4e-191 671.8 410 80.2
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 7.5e-191 670.6 410 79.3
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 7.5e-191 670.6 406 80.0
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 2.2e-190 669.1 406 80.3
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 2.8e-190 668.7 410 80.0
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 3.7e-190 668.3 410 79.8
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 6.3e-190 667.5 442 75.8
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 6.3e-190 667.5 406 79.1
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 6.3e-190 667.5 406 80.5
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 8.3e-190 667.2 404 80.7
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 2.4e-189 665.6 406 80.3
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 7.0e-189 664.1 406 79.6
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 9.1e-189 663.7 405 79.0
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 9.1e-189 663.7 404 79.7
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 2.0e-188 662.5 410 79.0
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 2.7e-188 662.1 406 79.6
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 4.5e-188 661.4 406 78.8
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 1.0e-187 660.2 405 78.8
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 1.0e-187 660.2 406 80.0
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 2.3e-187 659.1 405 78.8
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 2.3e-187 659.1 408 79.9
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 2.3e-187 659.1 407 79.6
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 2.9e-187 658.7 423 77.8
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 2.9e-187 658.7 406 80.0
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 3.8e-187 658.3 405 78.3
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 8.6e-187 657.1 405 78.3
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 8.6e-187 657.1 406 77.8
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 1.1e-186 656.8 406 79.1
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 1.5e-186 656.4 406 77.6
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 1.9e-186 656.0 463 72.6
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 2.5e-186 655.6 406 79.8
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 7.2e-186 654.1 403 78.2
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 1.6e-185 652.9 403 77.9
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 3.6e-185 651.7 402 77.9
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 3.6e-185 651.7 402 77.9
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 1.4e-184 649.8 404 78.0
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 2.6e-183 645.6 404 77.7
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 3.4e-183 645.2 412 77.2
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 4.4e-183 644.8 406 77.8
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.7e-182 642.9 406 77.1
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 6.3e-182 641.0 378 83.9
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 2.4e-181 639.0 406 77.6
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 4.1e-181 638.3 405 77.0
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 1.0e-179 633.6 406 76.4
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 1.3e-179 633.3 406 76.1
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 3.8e-179 631.7 377 82.2
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 6.6e-179 630.9 400 78.0
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 6.6e-179 630.9 400 78.8
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 8.6e-179 630.6 380 82.4
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 8.6e-179 630.6 460 71.1
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 7.3e-178 627.5 403 77.4
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 9.5e-178 627.1 428 73.8
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 2.1e-177 625.9 377 81.7
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.5e-175 619.8 396 76.5
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.5e-175 619.8 396 76.5
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 5.8e-175 617.8 380 79.5
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 1.1e-173 613.6 407 74.4
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 7.0e-173 610.9 395 76.7
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 1.0e-171 607.1 399 73.9
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 1.9e-170 602.8 377 79.0
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 4.3e-170 601.7 432 70.1
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 5.6e-170 601.3 410 73.2
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 6.2e-169 597.8 399 76.7
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 5.2e-168 594.7 406 70.2
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 3.4e-167 592.0 406 72.4
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 2.2e-166 589.3 400 72.2
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 5.4e-165 584.7 401 70.8
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 1.6e-164 583.2 356 79.5
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 1.0e-163 580.5 408 71.6
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 1.7e-163 579.7 361 79.2
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 7.5e-159 564.3 354 79.4
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 9.9e-159 563.9 348 80.2
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 1.7e-158 563.1 364 76.4
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 3.0e-155 552.4 405 68.9
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 7.3e-154 547.7 403 70.5
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 1.6e-148 530.0 343 76.1
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 1.6e-148 530.0 407 64.4
Cc01_g10730 Coffea canephora HOM05D004460 ORTHO05D005254 1.6e-148 530.0 294 87.8
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 9.6e-146 520.8 374 71.9
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 4.2e-133 478.8 297 81.1
CARHR150840 Cardamine hirsuta HOM05D004460 ORTHO05D005254 3.5e-132 475.7 275 82.9
Psat7g112240 Pisum sativum HOM05D004460 ORTHO05D005254 3.5e-132 475.7 283 83.4
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 7.9e-132 474.6 330 71.8
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 2.6e-119 433.0 416 54.3
Sabra16G0128800 Salix brachista HOM05D004460 ORTHO05D005254 3.0e-115 419.5 225 86.2
SEGI_40785 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 3.9e-115 419.1 254 79.9
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 4.5e-111 405.6 346 64.2
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 3.2e-109 399.4 433 49.2
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 1.2e-108 397.5 269 77.7
Peaxi162Scf00073g01829 Petunia axillaris HOM05D004460 ORTHO05D005254 5.1e-107 392.1 222 86.0
VMungo0251G0290 Vigna mungo HOM05D004460 ORTHO05D005254 2.8e-105 386.3 222 81.5
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 1.8e-104 383.6 453 45.9
arahy.Tifrunner.gnm1.ann1.TK1EDX Arachis hypogaea HOM05D004460 ORTHO05D005254 2.2e-102 376.7 247 77.3
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 1.4e-101 374.0 404 49.3
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 1.1e-98 364.4 272 68.8
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 1.3e-94 350.9 269 69.1
Lj4A675G47 Lonicera japonica HOM05D004460 ORTHO05D005254 1.4e-91 340.9 225 76.9
Lj4A665T31 Lonicera japonica HOM05D004460 ORTHO05D005254 1.1e-90 337.8 184 86.4
arahy.Tifrunner.gnm1.ann1.XS4KTC Arachis hypogaea HOM05D004460 ORTHO05D005254 6.3e-89 332.0 182 84.1
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 7.0e-88 328.6 429 43.4
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 7.5e-82 308.5 255 64.3
arahy.Tifrunner.gnm1.ann1.X9KU0H Arachis hypogaea HOM05D004460 ORTHO05D005254 8.3e-81 305.1 212 73.1
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 2.0e-74 283.9 185 77.8
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.2e-66 258.1 259 56.8
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 1.6e-63 247.7 190 67.9
MSTRG.17732 Avicennia marina HOM05D004460 ORTHO05D005254 3.6e-60 236.5 138 79.7
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 2.4e-56 223.8 160 70.6
C02p00470 Brassica napus HOM05D004460 ORTHO05D005254 7.5e-50 202.2 208 51.4
HPP92_027906 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.2e-42 178.3 213 51.6
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 3.6e-36 156.8 131 63.4
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 4.0e-35 153.3 129 63.6
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 6.8e-35 152.5 98 69.4
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 9.9e-34 148.7 98 70.4
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 4.6e-31 139.8 105 68.6
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 1.5e-26 124.8 77 72.7
MD03G1005100 Malus domestica HOM05D004460 ORTHO05D005254 6.0e-23 112.8 57 87.7
Medtr2g047140 Medicago truncatula HOM05D004460 ORTHO05D005254 7.8e-23 112.5 91 59.3
Carub.0004s0823 Capsella rubella HOM05D004460 ORTHO05D005254 1.1e-19 102.1 75 68.0
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 1.8e-19 101.3 102 53.9
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 4.0e-19 100.1 61 70.5
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 1.7e-17 94.7 75 61.3
SEGI_00213 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 7.9e-15 85.9 69 50.7
HPP92_024473 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.9e-13 81.3 61 70.5
AT1G73160 Arabidopsis thaliana HOM05D002124 ORTHO05D004058 6.9e-11 72.8 323 27.9
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.0e-09 68.9 32 90.6
AL2G32910 Arabidopsis lyrata HOM05D002124 ORTHO05D004058 1.9e-08 64.7 319 26.0
THA.LOC104812201 Tarenaya hassleriana HOM05D002124 ORTHO05D004058 3.2e-08 63.9 319 24.1


User provided reference genes

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