Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI20325 Sapria himalayana HOM05D000740 ORTHO05D004750 2.4e-32 141.4 63 100.0
Sabra02G0082500 Salix brachista HOM05D000740 ORTHO05D004750 2.8e-12 74.7 47 66.0
FAN04G3189 Fragaria x ananassa HOM05D000740 ORTHO05D004750 8.2e-12 73.2 38 81.6
QL09p017597 Quercus lobata HOM05D000740 ORTHO05D004750 5.9e-10 67.0 36 77.8
FvH4_5g35480 Fragaria vesca HOM05D000740 ORTHO05D004750 8.5e-09 63.2 31 83.9
FAN08G2435 Fragaria x ananassa HOM05D000740 ORTHO05D004750 8.5e-09 63.2 31 83.9
FAN13G3285 Fragaria x ananassa HOM05D000740 ORTHO05D004750 8.5e-09 63.2 31 83.9
MD08G1196400 Malus domestica HOM05D000740 ORTHO05D004750 8.5e-09 63.2 31 83.9
MD15G1384200 Malus domestica HOM05D000740 ORTHO05D004750 8.5e-09 63.2 31 83.9
Manes.02G145500 Manihot esculenta HOM05D000740 ORTHO05D004750 8.5e-09 63.2 31 83.9
Manes.18G059600 Manihot esculenta HOM05D000740 ORTHO05D004750 8.5e-09 63.2 31 83.9
Prupe.1G530400 Prunus persica HOM05D000740 ORTHO05D004750 8.5e-09 63.2 31 83.9
RcHm_v2.0_Chr7g0236861 Rosa chinensis HOM05D000740 ORTHO05D004750 8.5e-09 63.2 31 83.9
Hund27015 Selenicereus undatus HOM05D000740 ORTHO05D004750 8.5e-09 63.2 33 72.7
FAN20G2246 Fragaria x ananassa HOM05D000740 ORTHO05D004750 1.4e-08 62.4 38 68.4
FAN18G2984 Fragaria x ananassa HOM05D000740 ORTHO05D004750 1.9e-08 62.0 31 80.6
Nn1g05545 Nelumbo nucifera HOM05D000740 ORTHO05D004750 1.9e-08 62.0 31 80.6
Potri.002G105100 Populus trichocarpa HOM05D000740 ORTHO05D004750 1.9e-08 62.0 31 80.6
TWI56G0545 Tripterygium wilfordii HOM05D000740 ORTHO05D004750 1.9e-08 62.0 31 80.6
Atru.chr6.122 Acer truncatum HOM05D000740 ORTHO05D004750 2.5e-08 61.6 32 78.1
Cpa.g.sc21.5 Carica papaya HOM05D000740 ORTHO05D004750 2.5e-08 61.6 31 80.6
Actinidia29622 Actinidia chinensis HOM05D000740 ORTHO05D004750 4.2e-08 60.8 31 77.4
EL10Ac1g01064 Beta vulgaris HOM05D000740 ORTHO05D004750 4.2e-08 60.8 31 77.4
CSS0044650 Camellia sinensis var. sinensis HOM05D000740 ORTHO05D004750 4.2e-08 60.8 33 72.7
Oeu024828.1 Olea europaea HOM05D000740 ORTHO05D004750 4.2e-08 60.8 34 73.5
PSO541G2502 Papaver somniferum HOM05D000740 ORTHO05D004750 4.2e-08 60.8 31 77.4
PSO675G7895 Papaver somniferum HOM05D000740 ORTHO05D004750 4.2e-08 60.8 31 77.4
Duzib041G0090 Durio zibethinus HOM05D000740 ORTHO05D004750 5.5e-08 60.5 31 80.6
Cfa013686 Carpinus fangiana HOM05D000740 ORTHO05D004750 7.2e-08 60.1 31 80.6
CiPaw.07G166400 Carya illinoinensis HOM05D000740 ORTHO05D004750 7.2e-08 60.1 31 80.6
Haze_22328 Corylus avellana HOM05D000740 ORTHO05D004750 7.2e-08 60.1 31 80.6
Gohir.A05G220200 Gossypium hirsutum HOM05D000740 ORTHO05D004750 7.2e-08 60.1 31 80.6
Gohir.A06G032608 Gossypium hirsutum HOM05D000740 ORTHO05D004750 7.2e-08 60.1 31 80.6
Gohir.D05G222800 Gossypium hirsutum HOM05D000740 ORTHO05D004750 7.2e-08 60.1 31 80.6
Gohir.D06G031900 Gossypium hirsutum HOM05D000740 ORTHO05D004750 7.2e-08 60.1 31 80.6
Gorai.009G230200 Gossypium raimondii HOM05D000740 ORTHO05D004750 7.2e-08 60.1 31 80.6
Gorai.010G035200 Gossypium raimondii HOM05D000740 ORTHO05D004750 7.2e-08 60.1 31 80.6
Thecc.08G069700 Theobroma cacao HOM05D000740 ORTHO05D004750 7.2e-08 60.1 31 80.6
MELO3C003795.2 Cucumis melo HOM05D000740 ORTHO05D004750 9.4e-08 59.7 31 77.4
CsaV3_3G045470 Cucumis sativus L. HOM05D000740 ORTHO05D004750 9.4e-08 59.7 31 77.4
Duzib093G0325 Durio zibethinus HOM05D000740 ORTHO05D004750 9.4e-08 59.7 31 80.6
Sed0014447 Sechium edule HOM05D000740 ORTHO05D004750 9.4e-08 59.7 31 77.4
GSVIVG01009765001 Vitis vinifera HOM05D000740 ORTHO05D004750 9.4e-08 59.7 31 77.4
Aa31LG4G9650 Aethionema arabicum HOM05D000740 ORTHO05D004750 1.2e-07 59.3 35 65.7
Ah.05g170800 Amaranthus hybridus HOM05D000740 ORTHO05D004750 1.2e-07 59.3 31 74.2
Aqoxy6G01442 Aquilegia oxysepala HOM05D000740 ORTHO05D004750 1.2e-07 59.3 31 77.4
CAN.G475.38 Capsicum annuum HOM05D000740 ORTHO05D004750 1.2e-07 59.3 31 77.4
AUR62019039 Chenopodium quinoa HOM05D000740 ORTHO05D004750 1.2e-07 59.3 31 74.2
AUR62027876 Chenopodium quinoa HOM05D000740 ORTHO05D004750 1.2e-07 59.3 31 74.2
Ca_05427_v3 Cicer arietinum L. HOM05D000740 ORTHO05D004750 1.2e-07 59.3 33 72.7
Solyc04g076230.3 Solanum lycopersicum HOM05D000740 ORTHO05D004750 1.2e-07 59.3 31 77.4
Sopen00g006470 Solanum pennellii HOM05D000740 ORTHO05D004750 1.2e-07 59.3 31 77.4
SGA_v2.0_scaffold84G26470 Striga asiatica HOM05D000740 ORTHO05D004750 1.2e-07 59.3 32 75.0
Atru.chr13.1027 Acer truncatum HOM05D000740 ORTHO05D004750 1.6e-07 58.9 31 77.4
Duzib093G0654 Durio zibethinus HOM05D000740 ORTHO05D004750 1.6e-07 58.9 34 70.6
Migut.N02868 Erythranthe guttata HOM05D000740 ORTHO05D004750 1.6e-07 58.9 31 77.4
Nn5g29902 Nelumbo nucifera HOM05D000740 ORTHO05D004750 1.6e-07 58.9 31 77.4
TAR625G1089 Trochodendron aralioides HOM05D000740 ORTHO05D004750 1.6e-07 58.9 31 77.4
CANSAT25G0785 Cannabis sativa HOM05D000740 ORTHO05D004750 2.1e-07 58.5 31 80.6
CANSAT64G2392 Cannabis sativa HOM05D000740 ORTHO05D004750 2.1e-07 58.5 31 80.6
ClCG05G018710 Citrullus lanatus HOM05D000740 ORTHO05D004750 2.1e-07 58.5 31 74.2
FvH4_2g39370 Fragaria vesca HOM05D000740 ORTHO05D004750 2.1e-07 58.5 31 74.2
Prupe.1G374700 Prunus persica HOM05D000740 ORTHO05D004750 2.1e-07 58.5 31 74.2
Hund16861 Selenicereus undatus HOM05D000740 ORTHO05D004750 2.7e-07 58.2 31 71.0
Actinidia10379 Actinidia chinensis HOM05D000740 ORTHO05D004750 3.6e-07 57.8 31 74.2
CSS0014228 Camellia sinensis var. sinensis HOM05D000740 ORTHO05D004750 3.6e-07 57.8 31 74.2
Ciclev10001124m.g Citrus clementina HOM05D000740 ORTHO05D004750 3.6e-07 57.8 31 74.2
DCAR_010138 Daucus carota HOM05D000740 ORTHO05D004750 3.6e-07 57.8 31 74.2
Dinv44852 Davidia involucrata HOM05D000740 ORTHO05D004750 3.6e-07 57.8 31 74.2
MD15G1022700 Malus domestica HOM05D000740 ORTHO05D004750 3.6e-07 57.8 31 74.2
Rhsim06G0072400 Rhododendron simsii HOM05D000740 ORTHO05D004750 3.6e-07 57.8 31 74.2
RcHm_v2.0_Chr6g0301631 Rosa chinensis HOM05D000740 ORTHO05D004750 3.6e-07 57.8 31 77.4
vmacro21332 Vaccinium macrocarpon HOM05D000740 ORTHO05D004750 3.6e-07 57.8 31 74.2
MSTRG.22173 Avicennia marina HOM05D000740 ORTHO05D004750 4.6e-07 57.4 31 74.2
Haze_22547 Corylus avellana HOM05D000740 ORTHO05D004750 4.6e-07 57.4 31 77.4
Dinv42622 Davidia involucrata HOM05D000740 ORTHO05D004750 4.6e-07 57.4 31 71.0
MBI06_g07368_MAGBIO Magnolia biondii HOM05D000740 ORTHO05D004750 4.6e-07 57.4 47 59.6
Carub.0007s1652 Capsella rubella HOM05D000740 ORTHO05D004750 6.1e-07 57.0 31 71.0
FAN26G3328 Fragaria x ananassa HOM05D000740 ORTHO05D004750 6.1e-07 57.0 32 68.8
QL02p009537 Quercus lobata HOM05D000740 ORTHO05D004750 6.1e-07 57.0 31 74.2
SalBow3G1949 Salvia bowleyana HOM05D000740 ORTHO05D004750 6.1e-07 57.0 31 74.2
unitig_744.g24107 Utricularia gibba HOM05D000740 ORTHO05D004750 6.1e-07 57.0 31 74.2
ECA233G2545 Erigeron canadensis HOM05D000740 ORTHO05D004750 7.9e-07 56.6 31 74.2
FAN27G1372 Fragaria x ananassa HOM05D000740 ORTHO05D004750 7.9e-07 56.6 31 74.2
HanXRQChr13g0401151 Helianthus annuus HOM05D000740 ORTHO05D004750 7.9e-07 56.6 31 74.2
Lsat_1_v5_gn_6_25621 Lactuca sativa HOM05D000740 ORTHO05D004750 7.9e-07 56.6 31 74.2
Nitab4.5_0000131g0340 Nicotiana tabacum HOM05D000740 ORTHO05D004750 7.9e-07 56.6 34 67.6
Nitab4.5_0003709g0070 Nicotiana tabacum HOM05D000740 ORTHO05D004750 7.9e-07 56.6 34 67.6
AL7G28660 Arabidopsis lyrata HOM05D000740 ORTHO05D004750 1.0e-06 56.2 31 71.0
AT4G24550 Arabidopsis thaliana HOM05D000740 ORTHO05D004750 1.0e-06 56.2 31 71.0
BcaC06g32876 Brassica carinata HOM05D000740 ORTHO05D004750 1.0e-06 56.2 31 71.0
A01p15910 Brassica napus HOM05D000740 ORTHO05D004750 1.0e-06 56.2 31 71.0
A08p21450 Brassica napus HOM05D000740 ORTHO05D004750 1.0e-06 56.2 31 71.0
C07p53650 Brassica napus HOM05D000740 ORTHO05D004750 1.0e-06 56.2 31 71.0
BolC7t45858H Brassica oleracea HOM05D000740 ORTHO05D004750 1.0e-06 56.2 31 71.0
BolC8t48577H Brassica oleracea HOM05D000740 ORTHO05D004750 1.0e-06 56.2 31 71.0
BraA01t01525Z Brassica rapa HOM05D000740 ORTHO05D004750 1.0e-06 56.2 31 71.0
BraA08t34094Z Brassica rapa HOM05D000740 ORTHO05D004750 1.0e-06 56.2 31 71.0
COL.COLO4_35219 Corchorus olitorius HOM05D000740 ORTHO05D004750 1.0e-06 56.2 33 75.8
Thhalv10025186m.g Eutrema salsugineum HOM05D000740 ORTHO05D004750 1.0e-06 56.2 31 71.0
MBI02_g32609_MAGBIO Magnolia biondii HOM05D000740 ORTHO05D004750 1.0e-06 56.2 32 75.0
Sp7g22550 Schrenkiella parvula HOM05D000740 ORTHO05D004750 1.0e-06 56.2 31 71.0
Os07g0620300 Oryza sativa ssp. japonica HOM05D000740 ORTHO05D004750 1.4e-06 55.8 45 57.8
Peaxi162Scf00979g00028 Petunia axillaris HOM05D000740 ORTHO05D004750 1.4e-06 55.8 29 75.9
THA.LOC104801702 Tarenaya hassleriana HOM05D000740 ORTHO05D004750 1.4e-06 55.8 31 67.7
TAR381G0776 Trochodendron aralioides HOM05D000740 ORTHO05D004750 1.4e-06 55.8 31 74.2
Zm00001eb076390 Zea mays HOM05D000740 ORTHO05D004750 1.4e-06 55.8 45 57.8
Cfa013870 Carpinus fangiana HOM05D000740 ORTHO05D004750 1.8e-06 55.5 29 79.3
CiPaw.07G157500 Carya illinoinensis HOM05D000740 ORTHO05D004750 1.8e-06 55.5 31 71.0
PGSC0003DMG400009348 Solanum tuberosum HOM05D000740 ORTHO05D004750 1.8e-06 55.5 31 74.2
arahy.Tifrunner.gnm1.ann1.EX1AWS Arachis hypogaea HOM05D000740 ORTHO05D004750 2.3e-06 55.1 31 71.0
arahy.Tifrunner.gnm1.ann1.IZX6KC Arachis hypogaea HOM05D000740 ORTHO05D004750 2.3e-06 55.1 31 71.0
LjContig00408g0002388 Lotus japonicus HOM05D000740 ORTHO05D004750 2.3e-06 55.1 31 71.0
Manes.18G020800 Manihot esculenta HOM05D000740 ORTHO05D004750 2.3e-06 55.1 31 74.2
SEGI_11652 Sequoiadendron giganteum HOM05D000740 ORTHO05D004750 3.0e-06 54.7 31 71.0
AagrBONN_evm.TU.Sc2ySwM_344.3625 Anthoceros agrestis HOM05D000740 ORTHO05D004750 5.1e-06 53.9 36 69.4
BcaC09g50854 Brassica carinata HOM05D000740 ORTHO05D004750 5.1e-06 53.9 31 67.7
C01p19880 Brassica napus HOM05D000740 ORTHO05D004750 5.1e-06 53.9 31 67.7
BolC1t01916H Brassica oleracea HOM05D000740 ORTHO05D004750 5.1e-06 53.9 31 67.7
CDE03G0315 Ceratophyllum demersum HOM05D000740 ORTHO05D004750 5.1e-06 53.9 45 55.6
Cc10_g15810 Coffea canephora HOM05D000740 ORTHO05D004750 6.7e-06 53.5 31 67.7
PGR042G0297 Punica granatum HOM05D000740 ORTHO05D004750 6.7e-06 53.5 33 72.7


User provided reference genes

Program Settings