Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 1.9e-115 419.1 201 100.0
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 5.4e-57 224.9 175 68.0
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 1.6e-56 223.4 175 68.0
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 1.6e-56 223.4 175 68.0
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 1.6e-56 223.4 175 68.0
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 1.6e-56 223.4 175 68.0
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 1.6e-56 223.4 175 68.0
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 1.6e-56 223.4 175 68.0
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.7e-56 222.6 175 67.4
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 2.7e-56 222.6 175 67.4
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.5e-56 222.2 175 66.9
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 5.9e-56 221.5 176 68.2
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 7.8e-56 221.1 175 67.4
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 1.0e-55 220.7 175 66.9
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.7e-55 219.9 176 67.6
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.3e-55 219.5 176 67.0
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 3.8e-55 218.8 175 66.3
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 3.8e-55 218.8 175 66.3
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.8e-55 218.8 175 66.3
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.8e-55 218.8 175 66.3
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.8e-55 218.8 175 66.3
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 3.8e-55 218.8 175 66.3
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 1.9e-54 216.5 175 66.3
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 3.3e-54 215.7 175 66.3
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 3.3e-54 215.7 175 66.3
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 3.3e-54 215.7 175 66.3
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 3.3e-54 215.7 175 66.3
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 3.3e-54 215.7 175 66.3
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 5.6e-54 214.9 175 65.7
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.2e-53 213.8 175 65.7
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.8e-53 212.6 175 65.1
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 1.4e-52 210.3 175 64.6
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 1.4e-52 210.3 175 65.1
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.8e-52 209.9 175 65.7
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 1.8e-52 209.9 175 64.6
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 4.0e-52 208.8 175 64.0
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 5.2e-52 208.4 175 64.6
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 5.2e-52 208.4 165 67.9
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 1.2e-51 207.2 178 62.9
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 2.0e-51 206.5 171 64.3
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 2.6e-51 206.1 175 64.6
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 2.6e-51 206.1 175 64.6
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 2.6e-51 206.1 175 64.6
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 2.6e-51 206.1 175 64.6
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 7.5e-51 204.5 175 64.0
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 1.3e-50 203.8 175 64.0
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 6.4e-50 201.4 164 65.2
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 8.3e-50 201.1 164 65.2
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 8.3e-50 201.1 164 65.2
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 8.3e-50 201.1 164 65.2
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.1e-49 200.7 180 61.7
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.1e-49 200.7 180 61.7
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 8.6e-47 191.0 168 62.5
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 2.0e-43 179.9 164 60.4
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 7.5e-43 177.9 167 59.9
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 7.5e-43 177.9 157 59.2
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 2.2e-42 176.4 175 58.3
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.7e-42 175.6 175 57.1
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 2.4e-41 172.9 151 61.6
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 1.6e-40 170.2 158 60.1
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 2.7e-40 169.5 174 58.6
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 2.5e-38 162.9 149 58.4
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 7.3e-38 161.4 169 54.4
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 4.7e-37 158.7 169 53.8
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 6.2e-37 158.3 169 53.8
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 6.2e-37 158.3 169 53.8
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 5.2e-36 155.2 169 52.7
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 7.5e-35 151.4 130 61.5
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 2.9e-34 149.4 175 51.4
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.9e-34 149.4 170 51.8
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 8.3e-34 147.9 169 52.1
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 1.2e-32 144.1 163 51.5
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 1.5e-27 127.1 93 73.1
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 4.4e-27 125.6 92 72.8
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 1.3e-26 124.0 156 44.9
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 3.5e-24 115.9 100 64.0
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 3.9e-23 112.5 108 55.6
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 3.6e-21 105.9 146 45.9
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.6e-21 105.9 141 43.3
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.1e-20 104.4 136 44.1
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.2e-19 100.9 163 39.9
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 2.0e-19 100.1 106 56.6
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 2.6e-19 99.8 83 67.5
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 1.3e-18 97.4 102 52.9
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 2.2e-18 96.7 80 61.2
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 1.7e-15 87.0 64 59.4
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.9e-14 83.6 63 71.4
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 5.6e-14 82.0 74 58.1
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 6.2e-13 78.6 124 39.5
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 2.4e-12 76.6 69 53.6
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 6.9e-12 75.1 112 45.5
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 1.5e-11 73.9 68 52.9
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 2.6e-11 73.2 65 52.3
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 2.6e-11 73.2 57 56.1
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 4.5e-11 72.4 47 80.9
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.4e-09 67.4 74 52.7
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.2e-09 65.9 56 62.5
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 1.2e-08 64.3 70 52.9
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 4.6e-08 62.4 52 63.5
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 6.0e-08 62.0 68 51.5
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 6.0e-08 62.0 42 78.6
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 3.0e-07 59.7 116 31.0
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 3.9e-07 59.3 54 51.9
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 1.5e-06 57.4 49 63.3
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 1.9e-06 57.0 126 39.7


User provided reference genes

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