Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI19278 Sapria himalayana HOM05D004391 ORTHO05D005193 1.1e-34 149.4 74 100.0
Duzib114G0048 Durio zibethinus HOM05D004391 ORTHO05D005193 8.7e-21 103.2 62 80.6
Duzib128G1816 Durio zibethinus HOM05D004391 ORTHO05D005193 1.5e-20 102.4 62 79.0
PGR142G4161 Punica granatum HOM05D004391 ORTHO05D005193 2.5e-20 101.7 62 79.0
TWI53G1180 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 3.3e-20 101.3 62 77.4
Gorai.013G009600 Gossypium raimondii HOM05D004391 ORTHO05D005193 4.3e-20 100.9 58 82.8
Gohir.D13G008800 Gossypium hirsutum HOM05D004391 ORTHO05D005193 5.6e-20 100.5 57 84.2
TWI09G0083 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 5.6e-20 100.5 62 75.8
Cpa.g.sc2.267 Carica papaya HOM05D004391 ORTHO05D005193 7.3e-20 100.1 62 74.2
unitig_747.g21439 Utricularia gibba HOM05D001024 ORTHO05D000878 7.3e-20 100.1 62 74.2
Eucgr.G03166 Eucalyptus grandis HOM05D004391 ORTHO05D005193 9.6e-20 99.8 62 75.8
Prupe.6G038800 Prunus persica HOM05D004391 ORTHO05D005193 9.6e-20 99.8 62 74.2
PGSC0003DMG400020649 Solanum tuberosum HOM05D004391 ORTHO05D005193 9.6e-20 99.8 58 79.3
Gorai.012G013200 Gossypium raimondii HOM05D004391 ORTHO05D005193 1.6e-19 99.0 74 66.2
Manes.18G125100 Manihot esculenta HOM05D004391 ORTHO05D005193 1.6e-19 99.0 56 82.1
Oeu025053.1 Olea europaea HOM05D004391 ORTHO05D005193 1.6e-19 99.0 62 74.2
Potri.013G159700 Populus trichocarpa HOM05D004391 ORTHO05D005193 1.6e-19 99.0 56 82.1
Solyc06g082680.4 Solanum lycopersicum HOM05D004391 ORTHO05D005193 1.6e-19 99.0 57 78.9
Sopen06g034070 Solanum pennellii HOM05D004391 ORTHO05D005193 1.6e-19 99.0 57 78.9
PGSC0003DMG400030477 Solanum tuberosum HOM05D004391 ORTHO05D005193 1.6e-19 99.0 57 78.9
CiPaw.05G185700 Carya illinoinensis HOM05D004391 ORTHO05D005193 2.1e-19 98.6 62 77.4
Dinv12291 Davidia involucrata HOM05D000139 ORTHO05D000103 2.1e-19 98.6 63 74.6
Solyc06g007540.3 Solanum lycopersicum HOM05D004391 ORTHO05D005193 2.1e-19 98.6 57 78.9
Sopen06g002450 Solanum pennellii HOM05D004391 ORTHO05D005193 2.1e-19 98.6 57 78.9
Gohir.A05G404700 Gossypium hirsutum HOM05D004391 ORTHO05D005193 2.8e-19 98.2 56 83.9
Gohir.A13G008200 Gossypium hirsutum HOM05D004391 ORTHO05D005193 2.8e-19 98.2 56 82.1
Nn5g26793 Nelumbo nucifera HOM05D004391 ORTHO05D005193 2.8e-19 98.2 62 75.8
THA.LOC104823179 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 2.8e-19 98.2 63 71.4
Ciclev10013576m.g Citrus clementina HOM05D004391 ORTHO05D005193 3.6e-19 97.8 62 75.8
Nitab4.5_0002167g0040 Nicotiana tabacum HOM05D004391 ORTHO05D005193 3.6e-19 97.8 58 75.9
THA.LOC109117202 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 3.6e-19 97.8 56 78.6
Glyma.14G206700 Glycine max HOM05D004391 ORTHO05D005193 4.8e-19 97.4 63 73.0
Nitab4.5_0003194g0030 Nicotiana tabacum HOM05D004391 ORTHO05D005193 4.8e-19 97.4 62 71.0
Peaxi162Scf00455g00003 Petunia axillaris HOM05D004391 ORTHO05D005193 4.8e-19 97.4 68 64.7
Phvul.008G244100 Phaseolus vulgaris HOM05D004391 ORTHO05D005193 4.8e-19 97.4 63 73.0
RcHm_v2.0_Chr5g0073771 Rosa chinensis HOM05D004391 ORTHO05D005193 4.8e-19 97.4 62 74.2
CAN.G181.27 Capsicum annuum HOM05D004391 ORTHO05D005193 6.2e-19 97.1 62 72.6
Ciclev10033444m.g Citrus clementina HOM05D004391 ORTHO05D005193 6.2e-19 97.1 62 75.8
VMungo0647G0523 Vigna mungo HOM05D004391 ORTHO05D005193 6.2e-19 97.1 57 77.2
Gohir.D04G011000 Gossypium hirsutum HOM05D004391 ORTHO05D005193 8.1e-19 96.7 56 82.1
MD03G1047800 Malus domestica HOM05D004391 ORTHO05D005193 8.1e-19 96.7 62 72.6
Nitab4.5_0000105g0300 Nicotiana tabacum HOM05D004391 ORTHO05D005193 8.1e-19 96.7 57 77.2
Nitab4.5_0000311g0070 Nicotiana tabacum HOM05D004391 ORTHO05D005193 8.1e-19 96.7 62 69.4
Nitab4.5_0002902g0130 Nicotiana tabacum HOM05D004391 ORTHO05D005193 8.1e-19 96.7 57 77.2
QL03p059558 Quercus lobata HOM05D004391 ORTHO05D005193 8.1e-19 96.7 61 73.8
HPP92_003137 Vanilla planifolia HOM05D004391 ORTHO05D005193 8.1e-19 96.7 62 72.6
Aa31LG11G6460 Aethionema arabicum HOM05D004391 ORTHO05D005193 1.1e-18 96.3 57 73.7
CAN.G874.64 Capsicum annuum HOM05D004391 ORTHO05D005193 1.1e-18 96.3 57 75.4
Thhalv10015196m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 1.1e-18 96.3 62 71.0
THA.LOC104823167 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 1.1e-18 96.3 56 76.8
Carub.0006s0430 Capsella rubella HOM05D004391 ORTHO05D005193 1.4e-18 95.9 62 69.4
Cfa009172 Carpinus fangiana HOM05D004391 ORTHO05D005193 1.4e-18 95.9 62 72.6
Ciclev10010097m.g Citrus clementina HOM05D004391 ORTHO05D005193 1.4e-18 95.9 62 74.2
Glyma.02G237700 Glycine max HOM05D004391 ORTHO05D005193 1.4e-18 95.9 63 71.4
Sp6g37450 Schrenkiella parvula HOM05D004391 ORTHO05D005193 1.4e-18 95.9 62 69.4
Aa31LG3G4110 Aethionema arabicum HOM05D004391 ORTHO05D005193 1.8e-18 95.5 75 62.7
AT3G10860 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 1.8e-18 95.5 56 76.8
BcaC06g32250 Brassica carinata HOM05D004391 ORTHO05D005193 1.8e-18 95.5 63 68.3
A10p30830 Brassica napus HOM05D004391 ORTHO05D005193 1.8e-18 95.5 63 68.3
C09p71330 Brassica napus HOM05D004391 ORTHO05D005193 1.8e-18 95.5 63 68.3
BolC9t59895H Brassica oleracea HOM05D004391 ORTHO05D005193 1.8e-18 95.5 63 68.3
BraA10t45125Z Brassica rapa HOM05D004391 ORTHO05D005193 1.8e-18 95.5 63 68.3
Carub.0003s1010 Capsella rubella HOM05D004391 ORTHO05D005193 1.8e-18 95.5 56 76.8
Thhalv10015197m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 1.8e-18 95.5 57 73.7
Peaxi162Scf00131g10129 Petunia axillaris HOM05D004391 ORTHO05D005193 1.8e-18 95.5 62 69.4
Sp6g37680 Schrenkiella parvula HOM05D004391 ORTHO05D005193 1.8e-18 95.5 57 73.7
Sc15g0002370 Simmondsia chinensis HOM05D004391 ORTHO05D005193 1.8e-18 95.5 57 75.4
THA.LOC104816504 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 1.8e-18 95.5 56 76.8
CARHR085430 Cardamine hirsuta HOM05D004391 ORTHO05D005193 2.4e-18 95.1 56 75.0
CARHR207860 Cardamine hirsuta HOM05D004391 ORTHO05D005193 2.4e-18 95.1 62 69.4
Haze_12207 Corylus avellana HOM05D004391 ORTHO05D005193 2.4e-18 95.1 62 71.0
vmacro02862 Vaccinium macrocarpon HOM05D004391 ORTHO05D005193 2.4e-18 95.1 56 80.4
AL6G15270 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 3.1e-18 94.7 57 73.7
AT5G05370 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 3.1e-18 94.7 57 73.7
Potri.019G132000 Populus trichocarpa HOM05D004391 ORTHO05D005193 3.1e-18 94.7 62 71.0
TAR633G0676 Trochodendron aralioides HOM05D004391 ORTHO05D005193 3.1e-18 94.7 62 74.2
BcaB01g05713 Brassica carinata HOM05D004391 ORTHO05D005193 4.0e-18 94.4 57 73.7
A05p38380 Brassica napus HOM05D004391 ORTHO05D005193 4.0e-18 94.4 56 75.0
C05p57280 Brassica napus HOM05D004391 ORTHO05D005193 4.0e-18 94.4 56 75.0
BolC1t05350H Brassica oleracea HOM05D004391 ORTHO05D005193 4.0e-18 94.4 56 75.0
BolC5t34384H Brassica oleracea HOM05D004391 ORTHO05D005193 4.0e-18 94.4 56 75.0
BraA01t04219Z Brassica rapa HOM05D004391 ORTHO05D005193 4.0e-18 94.4 56 75.0
BraA05t22629Z Brassica rapa HOM05D004391 ORTHO05D005193 4.0e-18 94.4 56 75.0
COL.COLO4_19488 Corchorus olitorius HOM05D004391 ORTHO05D005193 4.0e-18 94.4 62 72.6
Thhalv10021877m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 4.0e-18 94.4 56 75.0
CSS0038074 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 5.3e-18 94.0 62 71.0
Cc01_g15470 Coffea canephora HOM05D004391 ORTHO05D005193 5.3e-18 94.0 57 73.7
Thecc.10G186500 Theobroma cacao HOM05D004391 ORTHO05D005193 5.3e-18 94.0 62 69.4
TAR369G0568 Trochodendron aralioides HOM05D004391 ORTHO05D005193 5.3e-18 94.0 62 72.6
Lalb_Chr10g0103971 Lupinus albus HOM05D004391 ORTHO05D005193 6.9e-18 93.6 62 71.0
Nn5g27585 Nelumbo nucifera HOM05D004391 ORTHO05D005193 6.9e-18 93.6 62 71.0
Aa31LG3G3850 Aethionema arabicum HOM05D004391 ORTHO05D005193 9.0e-18 93.2 56 73.2
AL3G22380 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 9.0e-18 93.2 56 75.0
CANSAT80G1344 Cannabis sativa HOM05D004391 ORTHO05D005193 9.0e-18 93.2 62 71.0
LjContig00141g0006354 Lotus japonicus HOM05D004391 ORTHO05D005193 9.0e-18 93.2 57 75.4
HPP92_000080 Vanilla planifolia HOM05D004391 ORTHO05D005193 9.0e-18 93.2 62 69.4
ClCG08G017940 Citrullus lanatus HOM05D004391 ORTHO05D005193 1.2e-17 92.8 56 75.0
MELO3C010670.2 Cucumis melo HOM05D004391 ORTHO05D005193 1.2e-17 92.8 62 69.4
CsaV3_2G024700 Cucumis sativus L. HOM05D004391 ORTHO05D005193 1.2e-17 92.8 56 76.8
Lalb_Chr04g0251641 Lupinus albus HOM05D004391 ORTHO05D005193 1.2e-17 92.8 62 69.4
Sp3g09180 Schrenkiella parvula HOM05D004391 ORTHO05D005193 1.2e-17 92.8 56 73.2
A03p02270 Brassica napus HOM05D004391 ORTHO05D005193 2.0e-17 92.0 57 71.9
CSS0036971 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 2.0e-17 92.0 56 76.8
Os06g0175900 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 2.6e-17 91.7 62 69.4
Os06g0177000 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 2.6e-17 91.7 62 69.4
TPR.G7542 Trifolium pratense HOM05D004391 ORTHO05D005193 2.6e-17 91.7 63 69.8
RcHm_v2.0_Chr4g0441891 Rosa chinensis HOM05D004391 ORTHO05D005193 3.4e-17 91.3 62 69.4
FAN25G0672 Fragaria x ananassa HOM05D004391 ORTHO05D000090 4.5e-17 90.9 62 67.7
Hma1.2p1_0170F.1_g075340 Hydrangea macrophylla HOM05D004391 ORTHO05D005193 4.5e-17 90.9 63 66.7
Aqoxy2G00689 Aquilegia oxysepala HOM05D004391 ORTHO05D005193 5.8e-17 90.5 58 69.0
FvH4_3g40960 Fragaria vesca HOM05D004391 ORTHO05D005193 5.8e-17 90.5 62 67.7
FAN11G0346 Fragaria x ananassa HOM05D004391 ORTHO05D005193 5.8e-17 90.5 62 67.7
FAN16G3113 Fragaria x ananassa HOM05D004391 ORTHO05D005193 5.8e-17 90.5 62 67.7
Sed0004860 Sechium edule HOM05D004391 ORTHO05D005193 7.6e-17 90.1 57 71.9
GSVIVG01024232001 Vitis vinifera HOM05D004391 ORTHO05D005193 7.6e-17 90.1 62 67.7
arahy.Tifrunner.gnm1.ann1.M2MMUV Arachis hypogaea HOM05D004391 ORTHO05D005193 1.3e-16 89.4 62 69.4
Zm00001eb281780 Zea mays HOM05D004391 ORTHO05D005193 1.3e-16 89.4 56 73.2
Zm00001eb375180 Zea mays HOM05D004391 ORTHO05D005193 1.3e-16 89.4 56 73.2
Migut.D00804 Erythranthe guttata HOM05D004391 ORTHO05D005193 1.7e-16 89.0 62 67.7
FAN21G2439 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.7e-16 89.0 62 67.7
MD13G1094500 Malus domestica HOM05D004391 ORTHO05D005193 1.7e-16 89.0 62 69.4
SalBow3G4275 Salvia bowleyana HOM05D004391 ORTHO05D005193 2.2e-16 88.6 57 70.2
GSVIVG01024535001 Vitis vinifera HOM05D004391 ORTHO05D005193 2.2e-16 88.6 56 73.2
AUR62023375 Chenopodium quinoa HOM05D004391 ORTHO05D005193 2.9e-16 88.2 63 63.5
Prupe.1G250900 Prunus persica HOM05D004391 ORTHO05D005193 2.9e-16 88.2 62 67.7
AUR62013781 Chenopodium quinoa HOM05D004391 ORTHO05D005193 3.8e-16 87.8 62 64.5
Medtr5g075690 Medicago truncatula HOM05D004391 ORTHO05D005193 3.8e-16 87.8 57 71.9
FvH4_4g32870 Fragaria vesca HOM05D004391 ORTHO05D005193 4.9e-16 87.4 53 75.5
FAN07G1869 Fragaria x ananassa HOM05D004391 ORTHO05D005193 4.9e-16 87.4 53 75.5
FAN12G3281 Fragaria x ananassa HOM05D004391 ORTHO05D005193 4.9e-16 87.4 53 75.5
FAN17G0118 Fragaria x ananassa HOM05D004391 ORTHO05D005193 4.9e-16 87.4 53 75.5
FAN22G1549 Fragaria x ananassa HOM05D004391 ORTHO05D005193 4.9e-16 87.4 53 75.5
MD16G1095600 Malus domestica HOM05D004391 ORTHO05D005193 4.9e-16 87.4 62 67.7
SGA_v2.0_scaffold122G33334 Striga asiatica HOM05D004391 ORTHO05D005193 4.9e-16 87.4 57 71.9
Ah.05g177740 Amaranthus hybridus HOM05D004391 ORTHO05D005193 8.4e-16 86.7 62 62.9
Lsat_1_v5_gn_9_13380 Lactuca sativa HOM05D000838 ORTHO05D000656 8.4e-16 86.7 57 68.4
ECA236G4577 Erigeron canadensis HOM05D004391 ORTHO05D005193 1.6e-14 82.4 68 54.4
HanXRQChr10g0292911 Helianthus annuus HOM05D004391 ORTHO05D005193 2.7e-14 81.6 68 54.4
SEGI_31881 Sequoiadendron giganteum HOM05D004391 ORTHO05D005193 4.6e-14 80.9 50 66.0
SGA_v2.0_scaffold129G34161 Striga asiatica HOM05D004391 ORTHO05D005193 7.9e-14 80.1 53 71.7
FvH4_4g07960 Fragaria vesca HOM05D004391 ORTHO05D005193 1.0e-13 79.7 62 59.7
HanXRQChr05g0158631 Helianthus annuus HOM05D004391 ORTHO05D005193 1.0e-13 79.7 62 58.1
Lsat_1_v5_gn_5_177220 Lactuca sativa HOM05D004391 ORTHO05D005193 1.3e-13 79.3 68 51.5
Lsat_1_v5_gn_9_13340 Lactuca sativa HOM05D004391 ORTHO05D005193 3.9e-13 77.8 52 67.3
ECA248G3374 Erigeron canadensis HOM05D004391 ORTHO05D005193 5.1e-13 77.4 62 53.2
Lsat_1_v5_gn_8_98921 Lactuca sativa HOM05D004391 ORTHO05D005193 1.9e-12 75.5 57 63.2
Lsat_1_v5_gn_8_98901 Lactuca sativa HOM05D004391 ORTHO05D005193 3.3e-12 74.7 52 65.4
CBR_g1035 Chara braunii HOM05D004391 ORTHO05D005193 5.6e-12 73.9 55 60.0
AagrBONN_evm.TU.Sc2ySwM_362.2485 Anthoceros agrestis HOM05D004391 ORTHO05D005193 8.1e-11 70.1 56 58.9
BcaB04g21171 Brassica carinata HOM05D004391 ORTHO05D005193 1.1e-10 69.7 38 76.3
BolC2t06197H Brassica oleracea HOM05D004391 ORTHO05D005193 1.1e-10 69.7 41 78.0
Pp3c11_2590 Physcomitrium patens HOM05D004391 ORTHO05D005193 2.4e-10 68.6 56 51.8
Pp3c1_1570 Physcomitrium patens HOM05D004391 ORTHO05D005193 2.4e-10 68.6 56 51.8
Pp3c7_21160 Physcomitrium patens HOM05D004391 ORTHO05D005193 2.4e-10 68.6 56 51.8
C02p02320 Brassica napus HOM05D004391 ORTHO05D005193 5.3e-10 67.4 39 79.5
Oeu007160.1 Olea europaea HOM05D004391 ORTHO05D005193 2.0e-09 65.5 55 63.6
BcaB05g21720 Brassica carinata HOM05D004391 ORTHO05D005193 3.4e-09 64.7 52 55.8
DCAR_018583 Daucus carota HOM05D004391 ORTHO05D005193 2.5e-07 58.5 56 42.9
EL10Ac1g00726 Beta vulgaris HOM05D004391 ORTHO05D005193 5.5e-07 57.4 38 65.8
SMO117G0077 Selaginella moellendorffii HOM05D004391 ORTHO05D005193 1.6e-06 55.8 63 50.8


User provided reference genes

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