Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 0.0e+00 1115.9 589 100.0
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 8.7e-164 581.3 617 51.1
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 9.0e-161 571.2 617 51.2
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 1.7e-159 567.0 613 50.1
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 1.7e-159 567.0 615 51.4
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 2.2e-159 566.6 614 52.0
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 6.4e-159 565.1 625 50.7
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 1.4e-158 563.9 613 50.1
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 3.2e-158 562.8 613 49.8
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 4.2e-158 562.4 606 50.8
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 5.4e-158 562.0 613 49.8
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 9.3e-158 561.2 614 50.0
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 4.6e-157 558.9 612 49.7
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 6.0e-157 558.5 608 50.2
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.3e-156 557.4 605 50.4
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 1.3e-156 557.4 613 51.4
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 3.9e-156 555.8 619 49.8
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 5.1e-156 555.4 613 50.1
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 5.1e-156 555.4 612 50.2
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 5.1e-156 555.4 605 50.2
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 8.7e-156 554.7 612 50.3
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 1.1e-155 554.3 613 50.1
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 1.9e-155 553.5 614 49.8
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 9.6e-155 551.2 612 49.5
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 2.1e-154 550.1 589 50.1
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 1.1e-153 547.7 589 50.1
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 1.4e-153 547.4 612 50.5
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 2.4e-153 546.6 618 49.2
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 2.4e-153 546.6 613 49.3
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 4.0e-153 545.8 618 49.4
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 1.5e-152 543.9 613 49.8
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 2.0e-152 543.5 615 48.5
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 2.0e-152 543.5 612 49.2
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 3.4e-152 542.7 616 49.5
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 3.4e-152 542.7 616 49.5
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 4.5e-152 542.3 617 48.8
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 5.8e-152 542.0 614 49.0
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 5.8e-152 542.0 642 47.0
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 5.8e-152 542.0 614 47.9
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 7.6e-152 541.6 615 47.8
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 7.6e-152 541.6 614 48.4
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 7.6e-152 541.6 615 47.8
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 9.9e-152 541.2 615 48.5
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 1.7e-151 540.4 614 48.2
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 1.7e-151 540.4 614 48.2
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 1.7e-151 540.4 610 49.2
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 2.9e-151 539.7 615 47.2
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 2.9e-151 539.7 614 47.7
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 4.9e-151 538.9 614 47.7
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 4.9e-151 538.9 617 48.1
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 6.4e-151 538.5 615 47.5
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 6.4e-151 538.5 615 47.5
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 6.4e-151 538.5 617 48.3
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.1e-150 537.7 615 47.0
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 3.2e-150 536.2 609 48.3
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 4.2e-150 535.8 621 47.8
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 5.4e-150 535.4 613 49.4
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 5.4e-150 535.4 613 48.3
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 9.3e-150 534.6 611 47.6
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 9.3e-150 534.6 612 48.9
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 1.6e-149 533.9 614 49.0
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 6.0e-149 531.9 611 49.4
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 7.9e-149 531.6 617 47.8
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 1.0e-148 531.2 612 48.7
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 3.0e-148 529.6 619 47.8
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.9e-147 526.9 611 48.8
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.5e-147 526.6 608 48.4
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 5.6e-147 525.4 611 47.6
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 5.6e-147 525.4 638 45.9
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 9.6e-147 524.6 611 48.0
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 1.6e-146 523.9 611 48.0
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 2.1e-146 523.5 613 48.0
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 8.1e-146 521.5 614 47.2
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 1.8e-145 520.4 614 48.2
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 3.1e-145 519.6 611 47.3
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.2e-144 517.7 613 47.1
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 2.6e-144 516.5 616 47.2
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 1.7e-143 513.8 616 47.1
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 1.7e-143 513.8 614 47.4
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 2.4e-142 510.0 611 46.6
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 7.1e-142 508.4 614 45.3
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 1.6e-141 507.3 612 48.2
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 1.8e-140 503.8 557 49.6
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 1.5e-139 500.7 612 46.4
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 1.9e-139 500.4 638 44.2
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.9e-139 500.4 594 47.5
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 5.6e-139 498.8 614 46.1
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 9.6e-139 498.0 611 45.7
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 1.3e-138 497.7 604 45.0
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 2.8e-138 496.5 616 45.6
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 4.8e-138 495.7 613 46.2
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 1.8e-137 493.8 619 45.2
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 5.3e-137 492.3 600 44.5
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 9.0e-137 491.5 611 45.2
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 3.4e-136 489.6 611 45.0
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 4.9e-135 485.7 610 45.2
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 1.9e-134 483.8 617 44.7
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 5.5e-134 482.3 617 45.2
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 6.7e-132 475.3 596 45.1
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 1.1e-131 474.6 621 43.6
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 4.5e-128 462.6 589 44.0
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 5.9e-128 462.2 603 43.9
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 2.2e-122 443.7 619 41.0
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.4e-121 441.0 619 41.4
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 4.1e-121 439.5 614 41.7
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 1.2e-120 438.0 669 39.5
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 2.0e-120 437.2 614 41.2
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 5.9e-120 435.6 534 46.8
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 1.3e-119 434.5 608 42.4
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 1.2e-117 427.9 617 41.2
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 2.3e-116 423.7 491 49.5
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 6.7e-116 422.2 613 42.7
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 5.3e-113 412.5 875 34.2
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 9.1e-113 411.8 597 41.0
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 3.8e-111 406.4 476 47.7
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 3.8e-111 406.4 615 39.3
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 2.4e-97 360.5 570 39.8
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 8.3e-90 335.5 532 39.5
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 1.4e-89 334.7 607 34.3
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 5.5e-86 322.8 437 43.9
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 3.3e-78 297.0 424 41.5
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 7.5e-67 259.2 416 38.5
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 2.1e-64 251.1 632 27.5
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 2.3e-63 247.7 282 48.9
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 6.2e-61 239.6 389 38.6
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 6.8e-60 236.1 325 43.1
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 7.8e-56 222.6 280 44.3
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 3.0e-55 220.7 676 26.2
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 1.6e-53 214.9 475 32.0
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 1.6e-53 214.9 286 45.5
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 4.0e-52 210.3 190 55.3
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.5e-46 191.0 306 41.2
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 2.8e-45 187.6 228 43.0
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.4e-44 184.5 221 43.4
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 3.2e-41 174.1 246 44.3
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 2.1e-40 171.4 213 45.5
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 3.5e-40 170.6 196 48.5
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.0e-39 169.1 226 40.3
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 3.0e-39 167.5 175 49.7
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 8.7e-39 166.0 196 47.4
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 1.1e-38 165.6 160 51.9
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 6.2e-37 159.8 624 24.0
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 9.9e-35 152.5 155 51.6
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 5.1e-31 140.2 164 45.1
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 1.3e-29 135.6 159 44.0
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 4.9e-26 123.6 404 29.2
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 2.5e-25 121.3 125 48.8
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 1.6e-24 118.6 412 27.7
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 3.3e-22 110.9 105 52.4
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 4.0e-20 104.0 125 43.2
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 2.2e-18 98.2 148 42.6
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 5.5e-17 93.6 350 24.3
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.9e-14 85.1 78 53.8
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 3.7e-13 80.9 78 48.7
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 3.7e-13 80.9 77 48.1
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 1.4e-12 79.0 98 43.9
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 1.8e-12 78.6 218 30.7
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 5.3e-12 77.0 245 27.8
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 1.5e-11 75.5 139 33.1
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 1.5e-11 75.5 187 31.0
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 4.5e-11 73.9 155 37.4
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 2.2e-10 71.6 68 50.0
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 2.9e-10 71.2 173 30.6


User provided reference genes

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