Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 6.9e-173 610.5 306 100.0
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 3.4e-71 272.7 307 49.2
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 9.3e-69 264.6 305 50.8
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 9.3e-69 264.6 305 50.8
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 6.0e-68 261.9 311 46.0
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 1.0e-67 261.2 319 46.7
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.0e-67 261.2 305 50.2
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 1.1e-66 257.7 290 49.0
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 2.5e-66 256.5 312 49.0
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 9.6e-66 254.6 293 50.5
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 1.3e-65 254.2 304 48.0
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.3e-65 254.2 304 47.7
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.8e-65 253.1 274 52.2
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 6.2e-65 251.9 313 47.6
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 6.2e-65 251.9 250 54.0
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 8.2e-65 251.5 304 47.4
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.4e-64 250.8 308 47.4
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 2.4e-64 250.0 290 50.0
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 6.9e-64 248.4 302 46.7
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 6.9e-64 248.4 305 48.5
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 9.0e-64 248.1 311 47.6
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 9.0e-64 248.1 306 48.0
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 9.0e-64 248.1 312 47.1
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 2.0e-63 246.9 294 49.0
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 2.0e-63 246.9 311 48.2
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 2.0e-63 246.9 298 48.3
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 2.6e-63 246.5 315 47.3
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 2.6e-63 246.5 313 47.6
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 3.4e-63 246.1 285 49.5
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 4.5e-63 245.7 311 46.9
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 1.0e-62 244.6 290 47.2
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 1.0e-62 244.6 258 51.9
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 1.3e-62 244.2 305 45.6
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 1.7e-62 243.8 307 48.2
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 2.2e-62 243.4 311 46.9
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 2.2e-62 243.4 264 50.4
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 2.9e-62 243.0 305 47.9
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 3.8e-62 242.7 317 44.5
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 6.5e-62 241.9 248 53.2
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 8.4e-62 241.5 311 46.9
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 8.4e-62 241.5 306 47.1
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.1e-61 241.1 274 50.7
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 1.1e-61 241.1 304 44.7
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 1.1e-61 241.1 309 46.9
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 1.4e-61 240.7 294 49.0
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 1.4e-61 240.7 305 47.2
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 2.5e-61 240.0 243 53.1
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 3.2e-61 239.6 310 45.2
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 3.2e-61 239.6 305 45.6
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 3.2e-61 239.6 305 45.6
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 5.5e-61 238.8 291 48.5
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 5.5e-61 238.8 273 48.4
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 9.3e-61 238.0 315 46.3
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.7e-60 236.5 281 46.3
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 3.5e-60 236.1 283 45.9
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 3.5e-60 236.1 314 45.5
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 4.6e-60 235.7 292 48.3
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 1.0e-59 234.6 303 43.2
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 1.0e-59 234.6 295 48.1
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 1.3e-59 234.2 242 51.7
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 1.3e-59 234.2 278 49.3
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 3.9e-59 232.6 298 47.3
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 6.7e-59 231.9 295 46.8
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.1e-58 231.1 294 45.6
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 3.3e-58 229.6 303 45.9
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 3.3e-58 229.6 302 45.4
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 4.3e-58 229.2 310 43.2
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 4.3e-58 229.2 307 45.0
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 4.3e-58 229.2 280 45.0
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 1.3e-57 227.6 313 44.1
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 1.3e-57 227.6 273 47.6
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 2.8e-57 226.5 309 45.0
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 3.7e-57 226.1 242 50.0
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 4.8e-57 225.7 331 42.0
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 4.8e-57 225.7 298 45.6
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 6.3e-57 225.3 267 47.9
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 8.2e-57 224.9 249 49.0
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 1.4e-56 224.2 285 44.6
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 1.4e-56 224.2 309 46.6
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.4e-56 224.2 295 46.1
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 5.3e-56 222.2 308 43.5
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 9.0e-56 221.5 308 43.2
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 4.5e-55 219.2 242 50.8
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 7.7e-55 218.4 264 47.7
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 1.0e-54 218.0 257 45.9
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 1.3e-54 217.6 299 42.1
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 1.7e-54 217.2 311 42.8
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 2.2e-54 216.9 290 42.1
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 2.9e-54 216.5 316 40.8
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 3.8e-54 216.1 315 40.0
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 5.0e-54 215.7 290 42.4
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 5.0e-54 215.7 266 45.1
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 6.5e-54 215.3 264 46.2
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 8.5e-54 214.9 301 42.9
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 8.5e-54 214.9 289 41.9
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 1.9e-53 213.8 297 41.4
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 2.5e-53 213.4 309 43.4
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 2.5e-53 213.4 263 46.4
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 4.2e-53 212.6 291 43.6
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 5.5e-53 212.2 315 39.7
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 9.4e-53 211.5 297 41.8
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 9.4e-53 211.5 297 41.8
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 9.4e-53 211.5 297 41.8
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 9.4e-53 211.5 312 40.4
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 1.6e-52 210.7 315 39.4
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.1e-52 210.3 314 39.2
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 7.9e-52 208.4 243 46.9
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 1.4e-51 207.6 289 41.9
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 1.4e-51 207.6 289 41.9
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 3.0e-51 206.5 242 45.0
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 2.8e-49 199.9 323 38.1
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 6.3e-49 198.7 308 38.3
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 1.4e-48 197.6 237 46.4
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 2.2e-46 190.3 314 41.1
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 8.5e-46 188.3 311 40.2
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 1.4e-45 187.6 311 39.5
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 3.2e-45 186.4 248 42.3
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 2.7e-44 183.3 256 44.5
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 3.9e-43 179.5 253 40.3
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 9.7e-42 174.9 254 41.3
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 2.1e-36 157.1 284 36.3
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.0e-35 154.8 236 36.9
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 6.3e-33 145.6 189 41.8
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.5e-29 134.4 126 52.4
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 4.2e-29 132.9 154 46.8
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 9.4e-29 131.7 169 43.8
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 1.8e-27 127.5 170 41.8
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 9.8e-26 121.7 181 40.9
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 1.3e-22 111.3 259 33.6
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 3.2e-21 106.7 134 47.0
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 1.6e-20 104.4 146 42.5
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 2.4e-16 90.5 173 35.8
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 4.1e-16 89.7 107 41.1
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.2e-15 88.2 72 65.3
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 2.7e-15 87.0 72 65.3
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 3.5e-15 86.7 72 63.9
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 1.3e-14 84.7 72 63.9
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 2.9e-14 83.6 72 59.7
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.5e-13 80.5 71 60.6
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 4.2e-13 79.7 72 56.9
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 4.2e-13 79.7 72 56.9
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 5.5e-13 79.3 72 59.7
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 1.2e-10 71.6 247 27.5
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 2.6e-10 70.5 39 82.1
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 4.9e-09 66.2 226 27.9


User provided reference genes

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