Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 0.0e+00 1219.1 615 100.0
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 1.3e-170 604.0 631 52.5
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 3.2e-161 572.8 631 50.6
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 3.9e-159 565.8 631 50.1
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 6.3e-157 558.5 631 50.1
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 6.3e-157 558.5 617 51.2
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 1.5e-155 553.9 638 48.7
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 2.1e-152 543.5 598 51.2
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 2.7e-152 543.1 629 47.7
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 3.6e-152 542.7 630 49.4
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 3.6e-152 542.7 624 49.5
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 1.0e-151 541.2 629 49.4
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 1.4e-151 540.8 637 46.9
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 5.7e-150 535.4 638 46.4
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 5.7e-150 535.4 634 47.2
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 1.3e-149 534.3 629 48.8
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 4.8e-149 532.3 614 49.8
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 3.1e-148 529.6 635 46.6
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 2.6e-147 526.6 633 46.4
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 4.5e-147 525.8 614 49.0
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 4.5e-147 525.8 635 46.8
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 2.9e-146 523.1 638 47.2
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 5.0e-146 522.3 631 47.2
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 6.7e-143 511.9 640 45.2
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 7.4e-142 508.4 627 44.2
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 2.8e-141 506.5 640 45.0
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 1.4e-140 504.2 630 45.7
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 1.8e-140 503.8 636 45.9
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 9.1e-140 501.5 630 45.9
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 4.5e-139 499.2 632 44.0
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 5.9e-139 498.8 636 44.8
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 1.3e-138 497.7 630 44.3
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 2.9e-138 496.5 636 45.4
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 3.8e-138 496.1 634 45.0
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 6.5e-138 495.4 637 44.4
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 1.1e-137 494.6 637 45.5
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 1.5e-137 494.2 625 44.6
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 1.5e-137 494.2 627 44.2
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 4.2e-137 492.7 634 44.8
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 2.1e-136 490.3 636 44.3
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 2.7e-136 490.0 616 45.1
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 1.8e-135 487.3 639 44.1
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 2.3e-135 486.9 636 44.3
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 2.3e-135 486.9 603 44.9
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 1.3e-133 481.1 623 45.4
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 2.2e-133 480.3 624 43.6
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 6.3e-133 478.8 631 42.8
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 1.4e-132 477.6 621 43.5
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 2.4e-132 476.9 636 42.8
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 3.1e-132 476.5 629 42.4
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 5.3e-132 475.7 632 42.7
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 7.7e-131 471.9 627 42.4
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 1.0e-130 471.5 634 42.6
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 2.9e-130 469.9 627 42.6
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 2.9e-130 469.9 624 43.6
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 2.9e-130 469.9 629 42.4
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 1.9e-129 467.2 601 45.1
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 2.1e-128 463.8 634 41.6
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 2.7e-128 463.4 617 41.7
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 4.7e-128 462.6 630 41.4
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 1.4e-127 461.1 627 42.3
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 1.4e-127 461.1 628 41.9
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 5.2e-127 459.1 631 42.6
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 5.2e-127 459.1 625 41.9
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 8.8e-127 458.4 628 41.2
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 1.5e-126 457.6 631 40.7
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 4.8e-125 452.6 627 41.1
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 1.8e-124 450.7 627 42.1
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 9.1e-124 448.4 628 41.1
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 9.1e-124 448.4 634 40.5
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 1.6e-123 447.6 623 42.1
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 2.7e-123 446.8 588 42.5
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 3.5e-123 446.4 627 40.5
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 3.5e-123 446.4 627 40.5
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 3.5e-123 446.4 626 41.2
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 1.0e-122 444.9 627 40.5
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 2.9e-122 443.4 646 39.9
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 6.6e-122 442.2 627 40.2
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 1.5e-121 441.0 627 40.0
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 3.3e-121 439.9 628 40.9
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 4.0e-119 433.0 631 38.7
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 1.5e-118 431.0 627 39.7
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 2.0e-118 430.6 632 40.7
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 2.9e-114 416.8 598 41.8
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 1.8e-111 407.5 538 43.3
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 2.3e-111 407.1 481 49.5
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 2.9e-109 400.2 622 38.3
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 7.0e-108 395.6 629 37.5
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 4.6e-107 392.9 643 37.9
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 7.8e-107 392.1 534 42.1
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 3.6e-104 383.3 631 36.5
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.4e-100 371.3 624 37.8
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 2.7e-99 367.1 510 40.4
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 4.7e-96 356.3 372 53.0
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 4.6e-91 339.7 396 49.0
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 5.6e-89 332.8 417 45.8
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 1.1e-87 328.6 638 34.0
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.8e-87 327.8 661 32.2
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 3.1e-87 327.0 637 34.5
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.3e-82 310.8 441 40.6
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 1.7e-74 284.6 577 33.4
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 2.4e-63 247.7 295 46.8
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 1.1e-60 238.8 320 41.9
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 3.3e-57 227.3 319 40.4
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 3.7e-56 223.8 316 39.9
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 2.7e-51 207.6 649 26.2
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 1.0e-50 205.7 636 26.1
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 3.0e-50 204.1 599 27.7
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 5.3e-47 193.4 174 53.4
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 6.1e-43 179.9 566 26.1
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 9.7e-41 172.6 216 43.1
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 4.7e-27 127.1 365 25.5
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.3e-26 124.8 123 48.8
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 9.4e-20 102.8 88 53.4
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 4.0e-18 97.4 102 44.1
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 5.7e-17 93.6 163 36.8
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 4.8e-16 90.5 127 43.3
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 4.1e-15 87.4 167 31.1
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 2.4e-07 61.6 99 33.3
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.6e-06 58.9 45 53.3


User provided reference genes

Program Settings