Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI19189 Sapria himalayana HOM05D011591 ORTHO05D010376 9.9e-118 426.8 214 100.0
Sabra09G0056900 Salix brachista HOM05D011591 ORTHO05D010376 7.3e-28 128.3 159 53.5
Potri.009G075000 Populus trichocarpa HOM05D020455 ORTHO05D010376 6.8e-26 121.7 147 53.1
Manes.18G136300 Manihot esculenta HOM05D011591 ORTHO05D010376 1.7e-24 117.1 107 62.6
Haze_24379 Corylus avellana HOM05D028161 ORTHO05D010376 1.4e-23 114.0 124 54.8
MELO3C020524.2 Cucumis melo HOM05D039867 ORTHO05D010376 4.1e-23 112.5 122 56.6
Cfa011740 Carpinus fangiana HOM05D028161 ORTHO05D010376 5.4e-23 112.1 124 53.2
Thecc.09G353600 Theobroma cacao HOM05D020455 ORTHO05D010376 6.0e-22 108.6 133 51.1
Sed0000970 Sechium edule HOM05D011591 ORTHO05D010376 2.5e-20 103.2 123 51.2
FvH4_3g39200 Fragaria vesca HOM05D040535 ORTHO05D010376 7.6e-17 91.7 110 56.4
FAN11G1101 Fragaria x ananassa HOM05D008445 ORTHO05D010376 7.6e-17 91.7 110 56.4
FAN21G0777 Fragaria x ananassa HOM05D002172 ORTHO05D010376 1.7e-16 90.5 110 55.5
Hma1.2p1_1974F.1_g309630 Hydrangea macrophylla HOM05D010709 ORTHO05D010376 2.9e-16 89.7 139 44.6
QL01p039514 Quercus lobata HOM05D011591 ORTHO05D010376 1.4e-15 87.4 89 59.6
THA.LOC104810699 Tarenaya hassleriana HOM05D011591 ORTHO05D010376 2.1e-14 83.6 179 39.7
TWI74G1424 Tripterygium wilfordii HOM05D002172 ORTHO05D010376 3.9e-13 79.3 122 38.5
Pp3c5_20330 Physcomitrium patens HOM05D002172 ORTHO05D002167 8.6e-13 78.2 138 34.8
Pp3c6_7520 Physcomitrium patens HOM05D002172 ORTHO05D002167 1.9e-12 77.0 142 34.5
CSS0041982 Camellia sinensis var. sinensis HOM05D010709 ORTHO05D010376 4.3e-12 75.9 134 38.1
MBI15_g40755_MAGBIO Magnolia biondii HOM05D002172 ORTHO05D002167 4.3e-12 75.9 139 35.3
arahy.Tifrunner.gnm1.ann1.EA8GWL Arachis hypogaea HOM05D020455 ORTHO05D010376 1.2e-11 74.3 98 43.9
Rhsim13G0066500 Rhododendron simsii HOM05D010709 ORTHO05D010376 1.2e-11 74.3 151 35.8
Actinidia32624 Actinidia chinensis HOM05D010709 ORTHO05D010376 1.6e-11 73.9 127 40.2
Gohir.A05G107850 Gossypium hirsutum HOM05D020455 ORTHO05D010376 1.6e-11 73.9 117 41.0
Gohir.D05G108050 Gossypium hirsutum HOM05D020455 ORTHO05D010376 1.6e-11 73.9 138 38.4
QL07p034309 Quercus lobata HOM05D002172 ORTHO05D002167 1.6e-11 73.9 134 34.3
CDE04G2153 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 2.1e-11 73.6 107 43.0
arahy.Tifrunner.gnm1.ann1.NC1Z37 Arachis hypogaea HOM05D000516 ORTHO05D010376 2.8e-11 73.2 98 43.9
Gorai.009G112200 Gossypium raimondii HOM05D020455 ORTHO05D010376 2.8e-11 73.2 116 41.4
SGA_v2.0_scaffold54G19473 Striga asiatica HOM05D010709 ORTHO05D010376 6.2e-11 72.0 102 42.2
TWI14G1374 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 8.1e-11 71.6 145 37.2
Mapoly0019s0040 Marchantia polymorpha HOM05D001917 ORTHO05D002167 1.1e-10 71.2 103 43.7
Dinv19980 Davidia involucrata HOM05D002172 ORTHO05D002167 1.4e-10 70.9 124 39.5
Solyc12g010800.2 Solanum lycopersicum HOM05D002172 ORTHO05D002167 1.8e-10 70.5 125 38.4
Sopen12g006170 Solanum pennellii HOM05D002172 ORTHO05D002167 1.8e-10 70.5 125 38.4
Thecc.05G010100 Theobroma cacao HOM05D002172 ORTHO05D002167 2.4e-10 70.1 110 36.4
COL.COLO4_14489 Corchorus olitorius HOM05D002172 ORTHO05D002167 3.1e-10 69.7 106 40.6
PGSC0003DMG401007810 Solanum tuberosum HOM05D002172 ORTHO05D002167 3.1e-10 69.7 121 38.8
CSS0033974 Camellia sinensis var. sinensis HOM05D010709 ORTHO05D010376 8.9e-10 68.2 118 36.4
Lj3g0018486 Lotus japonicus HOM05D002172 ORTHO05D002167 8.9e-10 68.2 160 33.8
Potri.009G074900 Populus trichocarpa HOM05D010097 ORTHO05D011665 8.9e-10 68.2 135 31.9
TWI23G0692 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 8.9e-10 68.2 144 35.4
CSS0009595 Camellia sinensis var. sinensis HOM05D002172 ORTHO05D002167 1.2e-09 67.8 112 39.3
Ah.01g003880 Amaranthus hybridus HOM05D002172 ORTHO05D002167 1.5e-09 67.4 112 39.3
CDE02G3937 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 1.5e-09 67.4 106 40.6
Pp3c1_7300 Physcomitrium patens HOM05D000516 ORTHO05D002167 1.5e-09 67.4 106 41.5
TAR624G0475 Trochodendron aralioides HOM05D002172 ORTHO05D002167 2.0e-09 67.0 109 40.4
TAR624G0577 Trochodendron aralioides HOM05D002172 ORTHO05D002167 2.0e-09 67.0 109 40.4
Ah.04g164430 Amaranthus hybridus HOM05D002172 ORTHO05D007185 2.6e-09 66.6 117 38.5
Pp3c24_10470 Physcomitrium patens HOM05D002172 ORTHO05D002167 2.6e-09 66.6 105 37.1
AUR62038993 Chenopodium quinoa HOM05D002172 ORTHO05D002167 3.4e-09 66.2 104 41.3
MD17G1233900 Malus domestica HOM05D002172 ORTHO05D002167 3.4e-09 66.2 113 41.6
PGR142G3291 Punica granatum HOM05D002172 ORTHO05D002167 3.4e-09 66.2 101 42.6
CDE03G0342 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 4.4e-09 65.9 112 39.3
Manes.18G136421 Manihot esculenta HOM05D010097 ORTHO05D011665 4.4e-09 65.9 97 40.2
Pp3c2_26970 Physcomitrium patens HOM05D002172 ORTHO05D002167 4.4e-09 65.9 111 40.5
Pp3c8_11470 Physcomitrium patens HOM05D002172 ORTHO05D002167 4.4e-09 65.9 118 32.2
Sabra19G0105300 Salix brachista HOM05D002172 ORTHO05D002167 4.4e-09 65.9 89 43.8
C09p69280 Brassica napus HOM05D011591 ORTHO05D010376 5.8e-09 65.5 140 36.4
BolC9t59672H Brassica oleracea HOM05D011591 ORTHO05D010376 5.8e-09 65.5 140 36.4
Manes.13G139500 Manihot esculenta HOM05D002172 ORTHO05D002167 5.8e-09 65.5 119 37.8
PGSC0003DMG400030371 Solanum tuberosum HOM05D010709 ORTHO05D010376 5.8e-09 65.5 105 39.0
BcaC07g40326 Brassica carinata HOM05D002172 ORTHO05D002167 7.6e-09 65.1 105 41.0
A10p28930 Brassica napus HOM05D011591 ORTHO05D010376 7.6e-09 65.1 140 35.7
BraA10t44940Z Brassica rapa HOM05D011591 ORTHO05D010376 7.6e-09 65.1 140 35.7
Thhalv10014931m.g Eutrema salsugineum HOM05D011591 ORTHO05D010376 7.6e-09 65.1 110 43.6
Peaxi162Scf00384g00069 Petunia axillaris HOM05D002172 ORTHO05D002167 7.6e-09 65.1 105 41.9
EL10Ac9g20854 Beta vulgaris HOM05D002172 ORTHO05D002167 9.9e-09 64.7 102 41.2
BcaC02g12484 Brassica carinata HOM05D002172 ORTHO05D002167 9.9e-09 64.7 106 40.6
A05p02920 Brassica napus HOM05D002172 ORTHO05D002167 9.9e-09 64.7 106 40.6
C04p03550 Brassica napus HOM05D002172 ORTHO05D002167 9.9e-09 64.7 106 40.6
CAN.G318.5 Capsicum annuum HOM05D002172 ORTHO05D002167 9.9e-09 64.7 101 41.6
SMO367G0542 Selaginella moellendorffii HOM05D002172 ORTHO05D002167 9.9e-09 64.7 105 41.0
Zm00001eb370720 Zea mays HOM05D002172 ORTHO05D002167 1.3e-08 64.3 94 43.6
ClCG03G000470 Citrullus lanatus HOM05D039867 ORTHO05D010376 1.7e-08 63.9 69 56.5
HanXRQChr03g0071001 Helianthus annuus HOM05D002172 ORTHO05D002167 1.7e-08 63.9 107 38.3
Manes.18G137881 Manihot esculenta HOM05D010097 ORTHO05D011665 1.7e-08 63.9 116 35.3
Sc12g0003320 Simmondsia chinensis HOM05D002172 ORTHO05D002167 1.7e-08 63.9 98 38.8
HPP92_005197 Vanilla planifolia HOM05D002172 ORTHO05D002167 1.7e-08 63.9 110 40.0
Nn1g01027 Nelumbo nucifera HOM05D002172 ORTHO05D011665 2.2e-08 63.5 109 40.4
Aqoxy4G02716 Aquilegia oxysepala HOM05D002172 ORTHO05D002167 2.9e-08 63.2 91 41.8
C08p33640 Brassica napus HOM05D002172 ORTHO05D002167 2.9e-08 63.2 105 40.0
BolC8t50961H Brassica oleracea HOM05D002172 ORTHO05D002167 2.9e-08 63.2 105 40.0
HPP92_020291 Vanilla planifolia HOM05D002172 ORTHO05D002167 2.9e-08 63.2 119 37.8
C03p28180 Brassica napus HOM05D002172 ORTHO05D002167 3.8e-08 62.8 131 35.1
Ca_14980_v3 Cicer arietinum L. HOM05D016525 ORTHO05D010376 3.8e-08 62.8 116 36.2
Dinv14958 Davidia involucrata HOM05D002172 ORTHO05D002167 3.8e-08 62.8 111 38.7
SEGI_18269 Sequoiadendron giganteum HOM05D002172 ORTHO05D002167 4.9e-08 62.4 68 47.1
Zm00001eb152810 Zea mays HOM05D002172 ORTHO05D002167 4.9e-08 62.4 114 38.6
Actinidia10984 Actinidia chinensis HOM05D002172 ORTHO05D002167 6.4e-08 62.0 114 36.8
Manes.03G103800 Manihot esculenta HOM05D002172 ORTHO05D002167 6.4e-08 62.0 106 40.6
AL6G17350 Arabidopsis lyrata HOM05D011591 ORTHO05D010376 8.4e-08 61.6 110 40.9
HanXRQChr13g0391241 Helianthus annuus HOM05D002172 ORTHO05D002167 8.4e-08 61.6 98 39.8
Os01g0211800 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 8.4e-08 61.6 111 36.0
Os01g0756200 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 8.4e-08 61.6 101 40.6
Sabra09G0056800 Salix brachista HOM05D010097 ORTHO05D011665 1.1e-07 61.2 147 28.6
Ca_18901_v3 Cicer arietinum L. HOM05D002172 ORTHO05D002167 1.4e-07 60.8 79 44.3
Psat5g275000 Pisum sativum HOM05D002172 ORTHO05D002167 1.4e-07 60.8 79 44.3
A03p23630 Brassica napus HOM05D002172 ORTHO05D002167 1.9e-07 60.5 96 40.6
BraA03t11579Z Brassica rapa HOM05D002172 ORTHO05D002167 1.9e-07 60.5 96 40.6
Lalb_Chr03g0030941 Lupinus albus HOM05D002172 ORTHO05D002167 1.9e-07 60.5 103 39.8
SHI27683 Sapria himalayana HOM05D002172 ORTHO05D002167 1.9e-07 60.5 82 42.7
Zm00001eb238570 Zea mays HOM05D002172 ORTHO05D002167 1.9e-07 60.5 89 41.6
Duzib147G1659 Durio zibethinus HOM05D002172 ORTHO05D002167 2.4e-07 60.1 111 36.9
QL01p039458 Quercus lobata HOM05D010097 ORTHO05D011665 2.4e-07 60.1 119 33.6
vmacro11903 Vaccinium macrocarpon HOM05D002172 ORTHO05D002167 2.4e-07 60.1 81 43.2
Gohir.D01G218600 Gossypium hirsutum HOM05D002172 ORTHO05D010376 3.2e-07 59.7 94 42.6
Gorai.002G265300 Gossypium raimondii HOM05D002172 ORTHO05D010376 3.2e-07 59.7 94 42.6
Lj8A152T85 Lonicera japonica HOM05D002172 ORTHO05D002167 3.2e-07 59.7 82 41.5
Nn1g04300 Nelumbo nucifera HOM05D002172 ORTHO05D002167 3.2e-07 59.7 82 41.5
Rhsim06G0204100 Rhododendron simsii HOM05D002172 ORTHO05D002167 3.2e-07 59.7 82 41.5
Hma1.2p1_0416F.1_g148590 Hydrangea macrophylla HOM05D002172 ORTHO05D002167 5.4e-07 58.9 108 38.0
Cpa.g.sc209.8 Carica papaya HOM05D002172 ORTHO05D002167 7.1e-07 58.5 115 33.9
Ca_04024_v3 Cicer arietinum L. HOM05D002172 ORTHO05D002167 7.1e-07 58.5 80 41.2
Thhalv10016923m.g Eutrema salsugineum HOM05D002172 ORTHO05D002167 7.1e-07 58.5 135 32.6
Sopen03g007660 Solanum pennellii HOM05D010709 ORTHO05D010376 7.1e-07 58.5 95 36.8
AT5G07160 Arabidopsis thaliana HOM05D011591 ORTHO05D010376 9.3e-07 58.2 103 41.7
ECA240G3701 Erigeron canadensis HOM05D002172 ORTHO05D002167 9.3e-07 58.2 102 36.3
Sp6g35750 Schrenkiella parvula HOM05D011591 ORTHO05D010376 9.3e-07 58.2 103 41.7
Sed0022779 Sechium edule HOM05D010097 ORTHO05D011665 9.3e-07 58.2 96 34.4
Carub.0006s0608 Capsella rubella HOM05D011591 ORTHO05D010376 1.2e-06 57.8 84 46.4
Rhsim06G0135000 Rhododendron simsii HOM05D002172 ORTHO05D002167 1.2e-06 57.8 113 35.4
Rhsim01G0239200 Rhododendron simsii HOM05D010709 ORTHO05D010376 1.6e-06 57.4 142 31.7
Lsat_1_v5_gn_9_99081 Lactuca sativa HOM05D002172 ORTHO05D002167 2.1e-06 57.0 98 37.8
PGSC0003DMG400039556 Solanum tuberosum HOM05D010709 ORTHO05D010376 2.1e-06 57.0 95 34.7
Lalb_Chr17g0345251 Lupinus albus HOM05D012059 ORTHO05D013484 2.7e-06 56.6 92 43.5
unitig_37.g12563 Utricularia gibba HOM05D002172 ORTHO05D002167 2.7e-06 56.6 117 35.0
Zm00001eb204490 Zea mays HOM05D002172 ORTHO05D002167 3.5e-06 56.2 79 41.8
FAN02G0891 Fragaria x ananassa HOM05D002172 ORTHO05D002167 4.6e-06 55.8 86 41.9
Lj3g0010389 Lotus japonicus HOM05D025460 ORTHO05D010376 4.6e-06 55.8 132 36.4
MD09G1240900 Malus domestica HOM05D002172 ORTHO05D002167 4.6e-06 55.8 67 47.8
TAR627G0822 Trochodendron aralioides HOM05D002172 ORTHO05D002167 4.6e-06 55.8 64 46.9
HPP92_024329 Vanilla planifolia HOM05D002172 ORTHO05D002167 4.6e-06 55.8 96 37.5
arahy.Tifrunner.gnm1.ann1.0BLG9X Arachis hypogaea HOM05D002172 ORTHO05D002167 6.0e-06 55.5 122 29.5
Cc01_g14580 Coffea canephora HOM05D010709 ORTHO05D010376 6.0e-06 55.5 157 33.1
Duzib268G0924 Durio zibethinus HOM05D002172 ORTHO05D002167 6.0e-06 55.5 64 48.4
FvH4_6g26970 Fragaria vesca HOM05D002172 ORTHO05D002167 6.0e-06 55.5 84 42.9
FAN05G0650 Fragaria x ananassa HOM05D002172 ORTHO05D002167 6.0e-06 55.5 84 42.9
Gohir.A01G228700 Gossypium hirsutum HOM05D002172 ORTHO05D010376 6.0e-06 55.5 83 41.0
FAN14G4401 Fragaria x ananassa HOM05D002172 ORTHO05D002167 7.8e-06 55.1 90 41.1
vmacro12360 Vaccinium macrocarpon HOM05D002172 ORTHO05D002167 7.8e-06 55.1 103 35.9


User provided reference genes

Program Settings