Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 8.8e-193 676.8 342 100.0
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 4.2e-110 402.1 327 61.5
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 7.9e-109 397.9 330 61.5
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 5.1e-108 395.2 342 58.8
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 3.3e-107 392.5 340 58.5
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 6.9e-105 384.8 340 57.9
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 4.9e-103 378.6 341 57.5
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 1.1e-102 377.5 332 60.8
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 5.5e-102 375.2 341 55.7
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 5.5e-102 375.2 342 56.4
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 9.3e-102 374.4 312 62.2
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 1.6e-101 373.6 338 58.6
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 4.6e-101 372.1 325 60.3
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.0e-100 370.9 331 58.3
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 5.1e-100 368.6 333 58.6
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 1.1e-99 367.5 327 57.5
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.5e-99 366.3 331 58.6
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 7.4e-99 364.8 331 57.4
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 2.8e-98 362.8 327 58.1
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 2.8e-98 362.8 341 55.1
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 8.2e-98 361.3 328 59.1
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 1.4e-97 360.5 341 54.8
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.1e-97 359.4 316 58.5
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 3.1e-97 359.4 329 56.5
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 6.9e-97 358.2 312 59.0
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 9.0e-97 357.8 317 58.4
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 4.5e-96 355.5 316 57.9
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 7.6e-96 354.8 335 56.4
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.2e-95 353.2 316 57.6
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 2.2e-95 353.2 333 55.6
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 7.2e-94 348.2 314 57.6
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 1.2e-93 347.4 332 56.0
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 6.1e-93 345.1 312 57.1
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.0e-92 344.4 289 59.2
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 1.8e-92 343.6 325 55.7
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 1.8e-92 343.6 329 57.4
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 2.3e-92 343.2 326 56.1
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 3.0e-92 342.8 320 56.6
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 3.0e-92 342.8 332 55.4
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 3.9e-92 342.4 323 56.7
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 6.7e-92 341.7 289 58.8
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 6.7e-92 341.7 332 55.4
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 6.7e-92 341.7 329 55.9
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 1.1e-91 340.9 317 57.7
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 2.5e-91 339.7 322 56.8
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 2.5e-91 339.7 340 55.0
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 3.3e-91 339.3 333 54.7
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 3.3e-91 339.3 342 54.7
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 4.3e-91 339.0 348 52.9
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 5.7e-91 338.6 308 57.1
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 7.4e-91 338.2 302 57.0
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 7.4e-91 338.2 334 55.4
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 7.4e-91 338.2 334 55.7
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 7.4e-91 338.2 342 53.2
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 1.3e-90 337.4 321 57.0
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.3e-90 337.4 312 56.4
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 1.3e-90 337.4 308 56.2
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 2.8e-90 336.3 286 59.1
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 6.3e-90 335.1 325 56.0
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 1.1e-89 334.3 334 54.8
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 1.8e-89 333.6 345 52.5
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 1.8e-89 333.6 325 55.7
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 2.4e-89 333.2 300 58.0
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 3.1e-89 332.8 324 54.9
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 5.3e-89 332.0 324 54.6
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 6.9e-89 331.6 301 58.1
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 6.9e-89 331.6 328 54.9
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 1.2e-88 330.9 335 53.7
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 1.2e-88 330.9 327 54.4
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 2.0e-88 330.1 324 54.3
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 2.0e-88 330.1 321 54.8
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 4.5e-88 328.9 300 57.3
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 5.9e-88 328.6 286 59.1
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 5.9e-88 328.6 317 56.2
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 1.7e-87 327.0 269 62.1
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 2.2e-87 326.6 324 54.9
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 3.8e-87 325.9 325 54.2
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 1.1e-86 324.3 328 53.4
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 7.2e-86 321.6 300 57.3
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 7.2e-86 321.6 320 54.1
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 3.6e-85 319.3 325 53.8
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 1.0e-84 317.8 333 51.7
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 2.0e-83 313.5 348 50.9
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 2.8e-82 309.7 269 58.0
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 4.8e-82 308.9 318 53.8
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.8e-81 307.0 319 53.0
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 1.8e-81 307.0 313 49.8
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 2.4e-81 306.6 314 51.9
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 6.9e-81 305.1 326 49.4
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 6.9e-81 305.1 348 49.7
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 2.0e-80 303.5 333 51.4
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 2.9e-79 299.7 319 49.8
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 3.8e-79 299.3 329 49.5
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 3.8e-79 299.3 286 57.0
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 5.0e-79 298.9 329 49.8
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 6.5e-79 298.5 354 47.2
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 8.5e-79 298.1 330 48.2
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 1.9e-78 297.0 276 56.2
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 3.2e-78 296.2 329 49.8
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 5.5e-78 295.4 317 49.8
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 2.7e-77 293.1 294 52.7
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 3.6e-77 292.7 363 47.4
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 6.1e-77 292.0 329 48.0
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 1.0e-76 291.2 287 55.7
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 2.3e-76 290.0 321 49.2
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 3.3e-75 286.2 331 47.7
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 9.7e-75 284.6 321 48.6
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.7e-74 282.7 319 49.8
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 4.8e-74 282.3 279 53.4
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 1.8e-73 280.4 280 55.0
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 2.0e-72 276.9 288 51.7
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 1.6e-69 267.3 294 48.6
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 8.2e-66 255.0 313 48.2
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 1.4e-60 237.7 290 46.2
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 2.0e-59 233.8 263 51.3
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 3.7e-58 229.6 288 45.8
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 4.8e-58 229.2 280 44.6
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 1.6e-56 224.2 280 44.3
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.2e-53 214.5 209 56.0
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 8.0e-53 211.8 279 42.3
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 2.3e-52 210.3 271 43.5
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 4.5e-48 196.1 294 38.4
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 4.3e-46 189.5 200 48.5
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.0e-39 168.3 165 53.9
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 1.6e-32 144.4 143 51.7
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 5.2e-28 129.4 134 50.0
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 2.6e-27 127.1 98 63.3
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 5.8e-27 125.9 126 50.8
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 1.6e-16 91.3 74 62.2
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 4.6e-16 89.7 77 61.0
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 2.5e-14 84.0 89 50.6
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 2.5e-14 84.0 89 50.6
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 2.0e-11 74.3 85 45.9
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 2.9e-10 70.5 86 44.2
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.9e-09 67.8 179 35.8
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.1e-06 58.5 104 37.5


User provided reference genes

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