Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 0.0e+00 1091.6 535 100.0
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 3.7e-198 695.3 556 63.1
Manes.02G119900 Manihot esculenta HOM05D006922 ORTHO05D008564 9.5e-194 680.6 557 62.3
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 3.6e-193 678.7 560 62.1
CiPaw.13G078100 Carya illinoinensis HOM05D006922 ORTHO05D008564 6.2e-193 677.9 506 65.2
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 1.4e-192 676.8 513 65.7
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 6.8e-192 674.5 536 61.6
vmacro02966 Vaccinium macrocarpon HOM05D006922 ORTHO05D008564 6.8e-192 674.5 482 66.6
CSS0043924 Camellia sinensis var. sinensis HOM05D006922 ORTHO05D008564 2.6e-191 672.5 569 60.1
Cpa.g.sc112.28 Carica papaya HOM05D006922 ORTHO05D008564 3.4e-191 672.2 523 63.9
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 2.2e-190 669.5 558 60.9
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 6.4e-190 667.9 484 66.7
Rhsim13G0069900 Rhododendron simsii HOM05D006922 ORTHO05D008564 1.1e-189 667.2 554 60.6
Sed0026257 Sechium edule HOM05D006922 ORTHO05D008564 7.1e-189 664.5 563 60.0
Gohir.A13G224600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 9.2e-189 664.1 561 60.6
Gorai.013G260300 Gossypium raimondii HOM05D006922 ORTHO05D008564 1.2e-188 663.7 561 60.6
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 1.2e-188 663.7 558 60.0
GSVIVG01024745001 Vitis vinifera HOM05D006922 ORTHO05D008564 1.2e-188 663.7 568 59.7
Duzib170G0653 Durio zibethinus HOM05D006922 ORTHO05D008564 1.6e-188 663.3 501 65.1
Thecc.09G302300 Theobroma cacao HOM05D006922 ORTHO05D008564 7.8e-188 661.0 558 60.9
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 1.0e-187 660.6 540 61.7
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 1.0e-187 660.6 537 61.8
Gohir.D13G229600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 1.3e-187 660.2 561 60.6
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 3.0e-187 659.1 557 59.8
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 3.9e-187 658.7 559 59.2
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 6.6e-187 657.9 557 59.2
Glyma.14G193200 Glycine max HOM05D006922 ORTHO05D008564 8.6e-187 657.5 563 58.6
Aqoxy4G02590 Aquilegia oxysepala HOM05D006922 ORTHO05D008564 1.1e-186 657.1 502 62.7
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 1.5e-186 656.8 559 59.6
Cfa011691 Carpinus fangiana HOM05D006922 ORTHO05D008564 5.6e-186 654.8 561 59.7
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 7.3e-186 654.4 566 58.5
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 1.6e-185 653.3 561 59.4
Sabra16G0152600 Salix brachista HOM05D006922 ORTHO05D008564 4.7e-185 651.7 512 62.9
CANSAT54G2041 Cannabis sativa HOM05D006922 ORTHO05D008564 1.1e-184 650.6 567 59.1
RcHm_v2.0_Chr5g0069361 Rosa chinensis HOM05D006922 ORTHO05D008564 1.1e-184 650.6 522 61.7
Cc01_g14160 Coffea canephora HOM05D006922 ORTHO05D008564 2.3e-184 649.4 502 63.3
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 8.9e-184 647.5 506 62.6
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 1.2e-183 647.1 506 62.5
PSO339G4985 Papaver somniferum HOM05D006922 ORTHO05D008564 1.2e-183 647.1 490 63.9
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 1.2e-183 647.1 562 57.7
PSO384G3055 Papaver somniferum HOM05D006922 ORTHO05D008564 2.6e-183 646.0 550 59.3
Haze_24310 Corylus avellana HOM05D006922 ORTHO05D008564 7.6e-183 644.4 632 54.1
Haze_24317 Corylus avellana HOM05D006922 ORTHO05D008564 7.6e-183 644.4 632 54.1
HanXRQChr01g0011191 Helianthus annuus HOM05D006922 ORTHO05D008564 7.6e-183 644.4 537 57.7
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 9.9e-183 644.0 574 57.3
MD11G1075200 Malus domestica HOM05D006922 ORTHO05D008564 1.3e-182 643.7 565 57.9
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 4.1e-181 638.6 527 59.2
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 5.4e-181 638.3 486 63.4
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 7.8e-180 634.4 476 63.9
SGA_v2.0_scaffold146G36139 Striga asiatica HOM05D006922 ORTHO05D008564 7.8e-180 634.4 572 56.1
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 1.0e-179 634.0 503 61.6
FAN25G0993 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.0e-179 634.0 578 56.9
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 1.0e-179 634.0 567 55.7
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 1.0e-179 634.0 538 58.7
Sc12g0000700 Simmondsia chinensis HOM05D006922 ORTHO05D008564 2.3e-179 632.9 432 67.8
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 3.0e-179 632.5 538 58.2
Ah.08g221140 Amaranthus hybridus HOM05D006922 ORTHO05D008564 7.3e-178 627.9 502 61.6
ECA248G0600 Erigeron canadensis HOM05D006922 ORTHO05D008564 7.3e-178 627.9 536 57.8
FAN21G2294 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.2e-177 627.1 564 56.7
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 3.6e-177 625.5 561 57.2
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 4.7e-177 625.2 527 59.0
MSTRG.17876 Avicennia marina HOM05D006922 ORTHO05D008564 3.1e-176 622.5 561 56.1
THA.LOC104814912 Tarenaya hassleriana HOM05D006922 ORTHO05D008564 6.9e-176 621.3 464 63.8
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 8.4e-174 614.4 436 65.6
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 5.4e-173 611.7 486 61.5
Migut.N00796 Erythranthe guttata HOM05D006922 ORTHO05D008564 2.1e-172 609.8 486 59.7
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 4.6e-172 608.6 432 67.1
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 1.3e-171 607.1 554 55.2
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 1.9e-170 603.2 428 66.1
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 3.3e-170 602.4 501 60.1
DCAR_007371 Daucus carota HOM05D006922 ORTHO05D008564 1.3e-169 600.5 469 60.8
Dinv14441 Davidia involucrata HOM05D006922 ORTHO05D008564 1.8e-168 596.7 563 55.6
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 5.3e-168 595.1 435 65.5
Nitab4.5_0021689g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 4.9e-166 588.6 622 50.6
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 1.9e-165 586.6 467 60.2
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 4.2e-165 585.5 428 62.4
EL10Ac7g16162 Beta vulgaris HOM05D006922 ORTHO05D008564 2.1e-164 583.2 558 54.7
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 7.4e-162 574.7 497 57.5
Peaxi162Scf00116g00214 Petunia axillaris HOM05D006922 ORTHO05D008564 9.6e-162 574.3 575 52.7
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 1.6e-161 573.5 482 58.9
CARHR272670 Cardamine hirsuta HOM05D006922 ORTHO05D008564 4.8e-161 572.0 428 63.3
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 4.0e-160 568.9 451 60.3
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 4.0e-160 568.9 451 60.3
LjContig00155g0013001 Lotus japonicus HOM05D006922 ORTHO05D008564 3.4e-159 565.8 570 51.4
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 5.8e-159 565.1 487 57.9
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 7.6e-159 564.7 498 57.2
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 9.9e-159 564.3 422 62.8
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 1.4e-157 560.5 498 56.8
AUR62020125 Chenopodium quinoa HOM05D006922 ORTHO05D008564 1.9e-157 560.1 557 53.0
AT5G58760 Arabidopsis thaliana HOM05D006922 ORTHO05D008564 2.4e-157 559.7 428 62.4
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 2.4e-157 559.7 422 62.3
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 2.4e-152 543.1 518 53.9
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 1.0e-147 527.7 478 52.7
AagrBONN_evm.TU.Sc2ySwM_344.796 Anthoceros agrestis HOM05D006922 ORTHO05D008564 6.7e-147 525.0 434 56.9
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 2.5e-146 523.1 491 50.1
Ca_05595_v3 Cicer arietinum L. HOM05D006922 ORTHO05D008564 3.2e-141 506.1 555 49.5
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 1.9e-138 496.9 429 53.6
FAN11G1737 Fragaria x ananassa HOM05D006922 ORTHO05D008564 5.1e-131 472.2 378 63.0
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 1.1e-130 471.1 422 51.7
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 3.4e-127 459.5 532 48.3
Prupe.6G058000 Prunus persica HOM05D006922 ORTHO05D008564 6.5e-126 455.3 556 47.3
HPP92_019877 Vanilla planifolia HOM05D006922 ORTHO05D008564 1.8e-120 437.2 481 50.3
FAN16G0983 Fragaria x ananassa HOM05D006922 ORTHO05D008564 2.5e-85 320.5 255 64.3
Hma1.2p1_0227F.1_g096470 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 7.8e-63 245.7 162 64.8
Cre13.g577550 Chlamydomonas reinhardtii HOM05D006922 ORTHO05D008564 1.5e-53 214.9 444 31.8
SEGI_07058 Sequoiadendron giganteum HOM05D006922 ORTHO05D008564 1.1e-48 198.7 145 58.6
COL.COLO4_19151 Corchorus olitorius HOM05D006922 ORTHO05D008564 2.5e-45 187.6 270 42.2
Actinidia23246 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.2e-39 168.7 111 73.9
FAN21G0821 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.5e-37 161.8 101 67.3
Actinidia16090 Actinidia chinensis HOM05D006922 ORTHO05D008564 3.0e-30 137.5 93 59.1
CAN.G3.37 Capsicum annuum HOM05D006922 ORTHO05D008564 1.7e-25 121.7 257 33.9
PGSC0003DMG400022078 Solanum tuberosum HOM05D006922 ORTHO05D008564 2.2e-25 121.3 146 50.7
Actinidia16091 Actinidia chinensis HOM05D006922 ORTHO05D008564 2.0e-21 108.2 59 81.4
Zm00001eb204440 Zea mays HOM05D008428 ORTHO05D010743 1.3e-20 105.5 72 68.1
Zm00001eb098530 Zea mays HOM05D008428 ORTHO05D010743 1.7e-20 105.1 72 66.7
Actinidia25165 Actinidia chinensis HOM05D006922 ORTHO05D008564 3.7e-20 104.0 82 58.5
Zm00001eb302770 Zea mays HOM05D008428 ORTHO05D010743 1.1e-19 102.4 72 66.7
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 3.1e-19 100.9 315 27.6
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 5.3e-19 100.1 317 26.8
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 5.3e-19 100.1 316 27.2
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 2.0e-18 98.2 314 27.7
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 6.5e-17 93.2 314 26.8
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 1.4e-16 92.0 316 26.3
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 1.4e-16 92.0 316 26.3
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 1.9e-16 91.7 335 24.5
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 5.5e-16 90.1 314 25.2
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 7.2e-16 89.7 255 28.6
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 6.1e-15 86.7 321 25.5
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.8e-14 85.1 314 26.1
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 2.3e-14 84.7 313 24.6
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 3.0e-14 84.3 309 26.5
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 6.7e-14 83.2 305 26.9
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 3.3e-13 80.9 309 25.2
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 4.4e-13 80.5 302 26.5
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 4.4e-13 80.5 305 25.2
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 5.7e-13 80.1 313 25.6
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 9.7e-13 79.3 304 26.0
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 1.1e-11 75.9 317 24.6
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 9.1e-11 72.8 295 22.7
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 1.5e-10 72.0 292 25.0
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 7.7e-10 69.7 310 23.9
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 2.9e-09 67.8 317 23.3
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 2.9e-09 67.8 242 24.4
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 5.0e-09 67.0 218 26.1
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 5.0e-09 67.0 292 24.3
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 8.5e-09 66.2 309 22.3
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.1e-08 65.9 311 26.7
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 2.5e-08 64.7 287 25.1
PSO731G0004 Papaver somniferum HOM05D000467 ORTHO05D000379 4.2e-08 63.9 205 23.9
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 1.2e-07 62.4 316 23.7
CDE02G4620 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 4.7e-07 60.5 177 31.6
TWI53G0392 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 4.7e-07 60.5 232 25.0
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.8e-06 58.5 210 26.2
LjContig00016g0007772 Lotus japonicus HOM05D001978 ORTHO05D003036 1.8e-06 58.5 231 23.4
LjContig00095g0022524 Lotus japonicus HOM05D001978 ORTHO05D003036 1.8e-06 58.5 231 23.4
Os07g0657200 Oryza sativa ssp. japonica HOM05D001978 ORTHO05D003036 1.8e-06 58.5 206 23.8
Phvul.011G010400 Phaseolus vulgaris HOM05D001978 ORTHO05D003036 1.8e-06 58.5 232 23.7


User provided reference genes

Program Settings