Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 0.0e+00 2535.0 1274 100.0
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1115.5 1226 51.1
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1103.2 1228 51.6
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1092.4 1295 48.7
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1077.0 1238 49.8
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 1.7e-311 1072.8 1238 49.6
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 1.3e-305 1053.5 1245 48.9
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 7.1e-304 1047.7 1256 48.6
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 3.0e-302 1042.3 1240 48.5
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 1.1e-301 1040.4 1236 48.7
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 1.9e-301 1039.6 1239 48.8
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 2.5e-301 1039.3 1251 48.2
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 4.3e-301 1038.5 1238 47.6
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 2.1e-300 1036.2 1243 48.6
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 3.4e-298 1028.9 1244 48.1
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 5.8e-298 1028.1 1239 47.8
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 1.3e-297 1026.9 1244 48.1
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 2.2e-297 1026.2 1238 47.5
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 2.9e-297 1025.8 1234 48.5
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 1.9e-296 1023.1 1230 48.5
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 5.4e-296 1021.5 1242 48.1
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 3.0e-294 1015.8 1241 47.1
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 5.1e-294 1015.0 1238 47.4
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 8.6e-294 1014.2 1241 48.1
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 1.1e-293 1013.8 1238 47.6
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 1.2e-292 1010.4 1246 47.0
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 3.1e-291 1005.7 1250 47.0
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 4.0e-291 1005.4 1238 47.2
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 1.7e-289 1000.0 1109 50.3
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 8.4e-289 997.7 1257 47.2
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 2.4e-288 996.1 1239 46.0
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 2.1e-287 993.0 1134 48.9
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 1.1e-285 987.3 1246 47.8
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 4.3e-285 985.3 1253 46.1
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 2.8e-284 982.6 1243 45.9
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 4.8e-284 981.9 1250 46.2
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 4.8e-284 981.9 1274 45.5
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 6.2e-284 981.5 1251 46.1
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 1.1e-283 980.7 1253 46.0
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 2.0e-282 976.5 1286 45.4
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 3.4e-282 975.7 1256 46.0
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 9.9e-282 974.2 1252 45.6
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 1.7e-281 973.4 1256 45.9
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 2.1e-279 966.5 1134 48.1
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 2.1e-279 966.5 1251 46.0
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 8.7e-278 961.1 1244 45.9
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 1.1e-277 960.7 1173 47.6
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 2.8e-276 956.1 1266 45.7
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 3.7e-276 955.7 1230 45.0
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 5.3e-275 951.8 1218 46.1
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 5.8e-274 948.3 1301 43.4
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 1.1e-272 944.1 1238 45.2
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 6.0e-271 938.3 1118 47.0
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 3.0e-270 936.0 1227 45.2
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 1.1e-269 934.1 1264 44.0
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 9.6e-269 931.0 1250 44.8
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 4.0e-267 925.6 1257 43.8
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 4.0e-267 925.6 1625 38.9
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 5.3e-267 925.2 1226 44.6
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 9.0e-267 924.5 1232 45.2
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 7.6e-266 921.4 1226 44.5
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 1.3e-265 920.6 1223 44.4
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 1.2e-263 914.1 1402 41.6
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 2.7e-263 912.9 1248 44.2
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 1.3e-262 910.6 1233 45.2
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 2.3e-262 909.8 1208 44.3
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 3.0e-262 909.4 1121 45.7
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 7.4e-261 904.8 1253 43.6
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 7.4e-261 904.8 1253 43.6
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 9.7e-261 904.4 1157 46.4
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 8.2e-260 901.4 1247 42.7
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 8.2e-260 901.4 1249 43.5
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 1.1e-259 901.0 1205 45.5
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 2.0e-258 896.7 999 49.3
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 8.5e-257 891.3 1227 44.3
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 2.4e-251 873.2 1085 46.5
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 5.3e-251 872.1 1239 42.1
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 4.7e-247 859.0 1064 45.8
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 5.1e-246 855.5 1256 41.4
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 1.1e-245 854.4 1226 42.6
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 3.4e-242 842.8 1123 43.4
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 8.5e-241 838.2 1235 42.3
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 1.5e-232 810.8 1156 41.6
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 8.2e-228 795.0 1106 43.6
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 4.2e-224 782.7 1235 39.5
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 1.3e-217 761.1 1049 43.2
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 1.6e-202 711.1 1142 38.6
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 7.8e-194 682.2 837 48.1
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 1.1e-192 678.3 914 43.3
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 8.9e-182 642.1 1125 37.1
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 2.9e-180 637.1 812 46.1
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 4.3e-176 623.2 805 44.6
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 3.5e-170 603.6 666 50.5
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 8.7e-169 599.0 657 50.7
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 1.1e-166 592.0 784 45.7
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 6.9e-158 562.8 711 47.3
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 1.5e-152 545.0 1068 34.5
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 1.0e-148 532.3 1132 32.6
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 3.8e-148 530.4 656 47.1
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 5.9e-141 506.5 1095 31.7
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 6.7e-137 493.0 490 52.7
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 1.4e-126 458.8 1281 29.0
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 2.6e-120 438.0 1267 28.5
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 5.7e-112 410.2 1249 28.3
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 1.1e-94 352.8 432 47.5
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 3.2e-86 324.7 392 46.7
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 8.4e-47 193.7 257 41.6
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 1.9e-38 166.0 178 50.6
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 5.5e-30 137.9 118 56.8
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 2.2e-26 125.9 506 25.3
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 5.1e-12 78.2 145 33.8
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 6.3e-10 71.2 83 43.4
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 1.0e-07 63.9 71 45.1
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 1.0e-07 63.9 70 45.7
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 2.9e-07 62.4 36 66.7
SGA_v2.0_scaffold100G29654 Striga asiatica HOM05D006302 ORTHO05D007960 1.1e-06 60.5 35 77.1
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 2.5e-06 59.3 36 72.2


User provided reference genes

Program Settings