Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 1.5e-152 542.7 260 100.0
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 1.2e-45 187.6 126 72.2
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 2.1e-45 186.8 130 68.5
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 2.7e-45 186.4 131 70.2
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 2.7e-45 186.4 146 64.4
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 2.7e-45 186.4 130 71.5
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 8.0e-45 184.9 130 67.7
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 1.0e-44 184.5 131 69.5
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 1.0e-44 184.5 138 66.7
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.2e-44 182.2 131 67.2
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 6.7e-44 181.8 131 67.2
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 8.8e-44 181.4 126 70.6
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 8.8e-44 181.4 131 70.2
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.5e-43 180.6 130 66.9
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 2.0e-43 180.3 131 65.6
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 2.0e-43 180.3 131 65.6
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 3.3e-43 179.5 120 72.5
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 4.4e-43 179.1 131 64.9
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 9.7e-43 177.9 121 70.2
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 9.7e-43 177.9 134 68.7
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 1.3e-42 177.6 146 60.3
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.3e-42 177.6 146 60.3
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.3e-42 177.6 146 60.3
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 1.3e-42 177.6 129 70.5
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 1.3e-42 177.6 130 64.6
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 2.2e-42 176.8 130 65.4
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 2.8e-42 176.4 131 65.6
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 2.8e-42 176.4 131 64.1
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 2.8e-42 176.4 145 62.1
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.7e-42 176.0 131 65.6
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 3.7e-42 176.0 131 67.2
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 4.8e-42 175.6 134 67.9
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 4.8e-42 175.6 134 68.7
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 4.8e-42 175.6 126 69.0
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 6.3e-42 175.3 120 71.7
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 8.2e-42 174.9 132 65.2
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 8.2e-42 174.9 162 55.6
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 8.2e-42 174.9 133 66.9
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 8.2e-42 174.9 134 67.2
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 8.2e-42 174.9 133 64.7
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.4e-41 174.1 146 58.9
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.8e-41 173.7 146 58.9
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 3.1e-41 172.9 133 66.2
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 4.1e-41 172.6 135 65.9
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 4.1e-41 172.6 148 59.5
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 5.3e-41 172.2 133 64.7
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 5.3e-41 172.2 132 65.2
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 5.3e-41 172.2 149 60.4
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 5.3e-41 172.2 120 70.0
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 7.0e-41 171.8 131 66.4
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 9.1e-41 171.4 132 64.4
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 9.1e-41 171.4 149 59.7
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 9.1e-41 171.4 146 60.3
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.2e-40 171.0 140 61.4
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 1.2e-40 171.0 133 63.9
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.2e-40 171.0 182 50.0
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 1.2e-40 171.0 133 65.4
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 1.6e-40 170.6 125 64.0
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.6e-40 170.6 140 62.1
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.6e-40 170.6 182 51.1
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 1.6e-40 170.6 132 62.9
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 2.0e-40 170.2 134 61.9
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 2.0e-40 170.2 120 70.0
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 2.7e-40 169.9 131 64.1
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 2.7e-40 169.9 138 60.9
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 2.7e-40 169.9 132 63.6
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 2.7e-40 169.9 125 64.8
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 3.5e-40 169.5 146 59.6
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 4.5e-40 169.1 132 62.1
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 4.5e-40 169.1 132 62.1
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 4.5e-40 169.1 140 62.1
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 4.5e-40 169.1 131 64.9
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 4.5e-40 169.1 134 62.7
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 4.5e-40 169.1 125 64.0
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 5.9e-40 168.7 133 63.9
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 5.9e-40 168.7 138 61.6
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 7.7e-40 168.3 131 64.1
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 7.7e-40 168.3 133 63.2
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 7.7e-40 168.3 148 59.5
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 1.0e-39 167.9 148 58.8
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 1.3e-39 167.5 132 61.4
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 1.3e-39 167.5 132 61.4
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 1.3e-39 167.5 182 49.5
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.3e-39 167.5 148 59.5
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.7e-39 167.2 182 49.5
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.7e-39 167.2 149 58.4
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.7e-39 167.2 147 58.5
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 2.2e-39 166.8 140 60.7
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 2.9e-39 166.4 137 64.2
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 2.9e-39 166.4 137 64.2
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 3.8e-39 166.0 125 66.4
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.8e-39 166.0 129 64.3
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 5.0e-39 165.6 182 47.8
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 6.5e-39 165.2 140 60.7
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 6.5e-39 165.2 140 60.0
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 1.1e-38 164.5 132 61.4
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 1.5e-38 164.1 130 63.1
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 1.5e-38 164.1 130 63.1
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 1.9e-38 163.7 146 58.9
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 1.9e-38 163.7 128 60.2
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 3.2e-38 162.9 140 60.0
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 4.2e-38 162.5 140 60.0
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 4.2e-38 162.5 140 60.0
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 4.2e-38 162.5 140 60.0
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 5.5e-38 162.2 125 60.8
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 9.4e-38 161.4 120 62.5
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 1.6e-37 160.6 140 58.6
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 1.6e-37 160.6 131 62.6
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 2.1e-37 160.2 148 56.8
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 2.7e-37 159.8 132 60.6
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 2.7e-37 159.8 132 60.6
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 8.0e-37 158.3 138 56.5
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 8.0e-37 158.3 119 64.7
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 2.3e-36 156.8 135 56.3
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 2.3e-36 156.8 142 54.2
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 3.4e-35 152.9 159 51.6
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 6.3e-34 148.7 143 51.7
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 2.4e-33 146.7 120 55.8
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 2.0e-32 143.7 117 58.1
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 3.3e-30 136.3 129 52.7
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 2.3e-28 130.2 119 54.6
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 2.8e-26 123.2 139 51.1
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 3.7e-26 122.9 84 72.6
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 5.9e-24 115.5 84 63.1
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 2.3e-23 113.6 137 43.8
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 3.8e-23 112.8 125 46.4
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 1.2e-21 107.8 146 47.3
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 1.8e-17 94.0 137 35.8
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 9.5e-14 81.6 98 41.8
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 4.0e-12 76.3 53 75.5
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 5.4e-09 65.9 50 60.0
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 1.2e-08 64.7 131 32.1
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.9e-06 57.4 51 52.9
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 2.5e-06 57.0 109 35.8
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 4.3e-06 56.2 51 51.0
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 5.6e-06 55.8 51 62.7
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 5.6e-06 55.8 51 62.7


User provided reference genes

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