Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18844 Sapria himalayana HOM05D005831 ORTHO05D007007 3.5e-169 598.2 302 100.0
CiPaw.15G092600 Carya illinoinensis HOM05D005831 ORTHO05D007007 1.5e-71 273.9 283 55.8
QL04p096581 Quercus lobata HOM05D005831 ORTHO05D007007 2.0e-71 273.5 282 55.7
Cfa018014 Carpinus fangiana HOM05D005831 ORTHO05D007007 6.4e-70 268.5 281 55.5
QL04p096516 Quercus lobata HOM05D000005 ORTHO05D000012 7.0e-69 265.0 282 54.6
TWI38G0260 Tripterygium wilfordii HOM05D005831 ORTHO05D007007 1.7e-67 260.4 282 56.4
Duzib150G1275 Durio zibethinus HOM05D005831 ORTHO05D007007 2.3e-67 260.0 277 55.6
Manes.03G052700 Manihot esculenta HOM05D005831 ORTHO05D007007 5.0e-67 258.8 282 53.2
GSVIVG01035453001 Vitis vinifera HOM05D005831 ORTHO05D007007 6.6e-67 258.5 281 54.1
MBI19_g11845_MAGBIO Magnolia biondii HOM05D005831 ORTHO05D007007 1.9e-66 256.9 283 53.0
Cpa.g.sc126.34 Carica papaya HOM05D005831 ORTHO05D007007 3.3e-66 256.1 283 54.4
Potri.006G222000 Populus trichocarpa HOM05D005831 ORTHO05D007007 4.3e-66 255.8 281 53.4
Ciclev10025877m.g Citrus clementina HOM05D005831 ORTHO05D007007 5.6e-66 255.4 283 54.4
Gohir.A07G020300 Gossypium hirsutum HOM05D005831 ORTHO05D007007 9.5e-66 254.6 279 53.0
Hma1.2p1_0231F.1_g097400 Hydrangea macrophylla HOM05D005831 ORTHO05D007007 1.6e-65 253.8 283 53.7
Hma1.2p1_0231F.1_g097410 Hydrangea macrophylla HOM05D005831 ORTHO05D007007 1.6e-65 253.8 278 54.3
PGR004G2090 Punica granatum HOM05D005831 ORTHO05D007007 1.4e-64 250.8 280 51.8
Nn8g38706 Nelumbo nucifera HOM05D005831 ORTHO05D007007 1.8e-64 250.4 283 51.2
Gorai.001G020700 Gossypium raimondii HOM05D005831 ORTHO05D007007 3.1e-64 249.6 279 52.7
ClCG05G015690 Citrullus lanatus HOM05D005831 ORTHO05D007007 6.8e-64 248.4 281 51.6
Thecc.09G062000 Theobroma cacao HOM05D005831 ORTHO05D007007 2.0e-63 246.9 279 51.6
RcHm_v2.0_Chr6g0311631 Rosa chinensis HOM05D005831 ORTHO05D007007 3.4e-63 246.1 277 52.0
arahy.Tifrunner.gnm1.ann1.2ULK6I Arachis hypogaea HOM05D005831 ORTHO05D007007 4.4e-63 245.7 278 53.2
CsaV3_4G036010 Cucumis sativus L. HOM05D005831 ORTHO05D007007 4.4e-63 245.7 281 50.5
Aqoxy3G01546 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 5.8e-63 245.4 284 50.7
MSTRG.25981 Avicennia marina HOM05D005831 ORTHO05D007007 1.3e-62 244.2 278 50.7
FvH4_2g31140 Fragaria vesca HOM05D005831 ORTHO05D007007 1.3e-62 244.2 283 52.7
TWI15G0825 Tripterygium wilfordii HOM05D005831 ORTHO05D007007 1.7e-62 243.8 284 53.5
Lalb_Chr09g0334801 Lupinus albus HOM05D005831 ORTHO05D007007 2.2e-62 243.4 284 53.5
FAN24G1737 Fragaria x ananassa HOM05D005831 ORTHO05D007007 6.4e-62 241.9 283 52.3
CANSAT25G0005 Cannabis sativa HOM05D005831 ORTHO05D007007 8.3e-62 241.5 276 53.3
Gohir.D07G020000 Gossypium hirsutum HOM05D005831 ORTHO05D007007 8.3e-62 241.5 289 50.5
Prupe.1G405700 Prunus persica HOM05D005831 ORTHO05D007007 1.4e-61 240.7 280 51.8
PSO210G0521 Papaver somniferum HOM05D005831 ORTHO05D007007 3.2e-61 239.6 283 49.8
CSS0021293 Camellia sinensis var. sinensis HOM05D005831 ORTHO05D007007 4.1e-61 239.2 282 51.1
PSO210G7793 Papaver somniferum HOM05D005831 ORTHO05D007007 4.1e-61 239.2 283 49.1
VMungo0647G0599 Vigna mungo HOM05D005831 ORTHO05D007007 7.1e-61 238.4 280 52.1
Sed0012871 Sechium edule HOM05D005831 ORTHO05D007007 9.2e-61 238.0 282 50.4
MD08G1070400 Malus domestica HOM05D005831 ORTHO05D007007 1.2e-60 237.7 278 50.7
Medtr1g015390 Medicago truncatula HOM05D005831 ORTHO05D007007 1.2e-60 237.7 280 52.9
vmacro07801 Vaccinium macrocarpon HOM05D005831 ORTHO05D007007 2.1e-60 236.9 287 50.9
Lj5g0001901 Lotus japonicus HOM05D005831 ORTHO05D007007 2.7e-60 236.5 282 50.7
Peaxi162Scf00101g01522 Petunia axillaris HOM05D005831 ORTHO05D007007 4.6e-60 235.7 282 48.2
Eucgr.C03149 Eucalyptus grandis HOM05D005831 ORTHO05D007007 7.8e-60 235.0 282 48.2
Sopen04g034540 Solanum pennellii HOM05D005831 ORTHO05D007007 7.8e-60 235.0 282 48.2
HanXRQChr12g0359011 Helianthus annuus HOM05D005831 ORTHO05D007007 1.0e-59 234.6 280 48.9
Phvul.001G039000 Phaseolus vulgaris HOM05D005831 ORTHO05D007007 1.0e-59 234.6 283 51.2
Actinidia25695 Actinidia chinensis HOM05D005831 ORTHO05D007007 2.3e-59 233.4 282 51.1
Solyc04g080930.4 Solanum lycopersicum HOM05D005831 ORTHO05D007007 2.3e-59 233.4 282 47.9
PGSC0003DMG400003758 Solanum tuberosum HOM05D005831 ORTHO05D007007 2.3e-59 233.4 282 48.2
CAN.G6.15 Capsicum annuum HOM05D005831 ORTHO05D007007 3.0e-59 233.0 282 47.9
Glyma.14G099100 Glycine max HOM05D005831 ORTHO05D007007 5.1e-59 232.3 281 50.2
Psat6g022600 Pisum sativum HOM05D005831 ORTHO05D007007 1.9e-58 230.3 284 50.7
Haze_18115 Corylus avellana HOM05D005831 ORTHO05D007007 2.5e-58 229.9 281 51.6
Dinv41837 Davidia involucrata HOM05D005831 ORTHO05D007007 2.5e-58 229.9 276 49.3
MD15G1051800 Malus domestica HOM05D005831 ORTHO05D007007 2.5e-58 229.9 280 50.4
ECA234G1597 Erigeron canadensis HOM05D005831 ORTHO05D007007 3.3e-58 229.6 281 48.8
Lsat_1_v5_gn_5_79500 Lactuca sativa HOM05D005831 ORTHO05D007007 3.3e-58 229.6 283 49.1
Glyma.17G225600 Glycine max HOM05D005831 ORTHO05D007007 7.3e-58 228.4 282 50.4
Sp4g07000 Schrenkiella parvula HOM05D005831 ORTHO05D007007 7.3e-58 228.4 279 51.6
Cc08_g01270 Coffea canephora HOM05D005831 ORTHO05D007007 1.6e-57 227.3 281 49.5
Aa31LG5G18500 Aethionema arabicum HOM05D005831 ORTHO05D007007 4.7e-57 225.7 281 49.1
THA.LOC104806019 Tarenaya hassleriana HOM05D005831 ORTHO05D007007 6.2e-57 225.3 280 50.0
Migut.A00086 Erythranthe guttata HOM05D005831 ORTHO05D007007 4.0e-56 222.6 279 47.7
Thhalv10002014m.g Eutrema salsugineum HOM05D005831 ORTHO05D007007 4.0e-56 222.6 281 49.1
Oeu027284.3 Olea europaea HOM05D005831 ORTHO05D007007 8.9e-56 221.5 325 44.0
Os07g0608800 Oryza sativa ssp. japonica HOM05D005831 ORTHO05D007007 4.4e-55 219.2 275 46.5
unitig_748.g8240 Utricularia gibba HOM05D005831 ORTHO05D007007 4.4e-55 219.2 319 44.8
AL4G18970 Arabidopsis lyrata HOM05D005831 ORTHO05D007007 7.6e-55 218.4 283 47.7
EL10Ac2g03793 Beta vulgaris HOM05D005831 ORTHO05D007007 1.3e-54 217.6 278 48.6
BcaB08g35248 Brassica carinata HOM05D005831 ORTHO05D007007 1.3e-54 217.6 277 49.1
A09p54720 Brassica napus HOM05D005831 ORTHO05D007007 3.7e-54 216.1 278 49.6
BcaC07g40824 Brassica carinata HOM05D005831 ORTHO05D007007 4.9e-54 215.7 278 49.3
Sabra06G0171700 Salix brachista HOM05D005831 ORTHO05D007007 4.9e-54 215.7 258 50.4
Carub.0004s0626 Capsella rubella HOM05D005831 ORTHO05D007007 6.4e-54 215.3 281 48.4
AUR62020581 Chenopodium quinoa HOM05D005831 ORTHO05D007007 8.4e-54 214.9 286 47.2
BraA09t40881Z Brassica rapa HOM05D005831 ORTHO05D007007 5.4e-53 212.2 279 49.5
A09p55230 Brassica napus HOM05D005831 ORTHO05D007007 7.1e-53 211.8 279 49.5
C08p38160 Brassica napus HOM05D005831 ORTHO05D007007 7.1e-53 211.8 282 48.2
BolC8t51391H Brassica oleracea HOM05D005831 ORTHO05D007007 7.1e-53 211.8 282 48.2
TPR.G38878 Trifolium pratense HOM05D005831 ORTHO05D007007 1.2e-52 211.1 268 47.8
TAR383G0824 Trochodendron aralioides HOM05D005831 ORTHO05D007007 2.1e-52 210.3 241 53.9
Zm00001eb108960 Zea mays HOM05D005831 ORTHO05D007007 3.0e-51 206.5 274 44.9
COL.COLO4_21126 Corchorus olitorius HOM05D005831 ORTHO05D007007 4.3e-50 202.6 216 54.6
AUR62009089 Chenopodium quinoa HOM05D005831 ORTHO05D007007 7.3e-50 201.8 277 44.0
DCAR_003715 Daucus carota HOM05D005831 ORTHO05D007007 2.0e-47 193.7 210 54.8
FAN15G1366 Fragaria x ananassa HOM05D005831 ORTHO05D007007 1.7e-46 190.7 219 53.0
Ca_13107_v3 Cicer arietinum L. HOM05D005831 ORTHO05D007007 7.1e-45 185.3 222 52.7
Nitab4.5_0000446g0240 Nicotiana tabacum HOM05D005831 ORTHO05D007007 1.2e-44 184.5 215 48.8
Nitab4.5_0009773g0010 Nicotiana tabacum HOM05D005831 ORTHO05D007007 6.0e-44 182.2 219 49.3
AT2G26350 Arabidopsis thaliana HOM05D005831 ORTHO05D007007 7.8e-44 181.8 227 49.3
Sed0000493 Sechium edule HOM05D005831 ORTHO05D007007 2.3e-43 180.3 219 48.9
SalBow4G2055 Salvia bowleyana HOM05D005831 ORTHO05D001900 5.1e-43 179.1 221 48.9
Rhsim03G0040100 Rhododendron simsii HOM05D005831 ORTHO05D007007 2.5e-42 176.8 233 48.1
arahy.Tifrunner.gnm1.ann1.VR587A Arachis hypogaea HOM05D005831 ORTHO05D007007 4.3e-42 176.0 274 42.7
ATR0598G074 Amborella trichopoda HOM05D005831 ORTHO05D007007 7.3e-42 175.3 224 47.3
Sc09g0010090 Simmondsia chinensis HOM05D005831 ORTHO05D007007 1.3e-41 174.5 224 49.1
CDE06G1722 Ceratophyllum demersum HOM05D005831 ORTHO05D007007 1.6e-41 174.1 193 53.4
Migut.A00085 Erythranthe guttata HOM05D005831 ORTHO05D007007 8.1e-41 171.8 232 46.1
BraA09t40930Z Brassica rapa HOM05D005831 ORTHO05D007007 1.1e-40 171.4 215 51.2
Lj2A627G34 Lonicera japonica HOM05D005831 ORTHO05D007007 6.9e-40 168.7 282 42.9
Mapoly0029s0064 Marchantia polymorpha HOM05D005831 ORTHO05D007007 1.3e-35 154.5 283 35.3
Aqoxy2G00096 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 5.6e-34 149.1 282 38.7
AagrBONN_evm.TU.Sc2ySwM_117.3066 Anthoceros agrestis HOM05D005831 ORTHO05D007007 2.4e-29 133.7 189 39.7
Aqoxy3G01853 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 6.7e-27 125.6 278 34.2
TPR.G10653 Trifolium pratense HOM05D005831 ORTHO05D007007 4.3e-26 122.9 150 50.7
Pp3c13_19650 Physcomitrium patens HOM05D005831 ORTHO05D007007 9.6e-26 121.7 269 31.6
FAN20G1335 Fragaria x ananassa HOM05D001583 ORTHO05D007007 3.7e-25 119.8 265 35.8
HPP92_027843 Vanilla planifolia HOM05D005831 ORTHO05D007007 1.4e-24 117.9 149 48.3
SGA_v2.0_scaffold64G21865 Striga asiatica HOM05D005831 ORTHO05D007007 9.0e-24 115.2 283 34.3
CARHR118440 Cardamine hirsuta HOM05D005831 ORTHO05D007007 3.9e-19 99.8 129 45.0
HPP92_027844 Vanilla planifolia HOM05D005831 ORTHO05D007007 2.8e-17 93.6 133 45.1
Psat0s2173g0120 Pisum sativum HOM05D012210 ORTHO05D007007 1.8e-16 90.9 92 56.5
SEGI_09079 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 5.3e-16 89.4 139 41.0
FAN27G2028 Fragaria x ananassa HOM05D005831 ORTHO05D007007 6.9e-16 89.0 124 48.4
Actinidia27570 Actinidia chinensis HOM05D005831 ORTHO05D007007 1.1e-13 81.6 73 57.5
PRCOL_00001676 Prasinoderma coloniale HOM05D005831 ORTHO05D007007 1.1e-13 81.6 281 28.5
arahy.Tifrunner.gnm1.ann1.12X2WP Arachis hypogaea HOM05D005831 ORTHO05D007007 5.5e-13 79.3 186 34.4
Aqoxy5G02406 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 1.6e-12 77.8 261 29.9
MELO3C016909.2 Cucumis melo HOM05D005831 ORTHO05D007007 3.0e-11 73.6 107 42.1
QL06p019149 Quercus lobata HOM05D005831 ORTHO05D007007 3.9e-11 73.2 102 47.1
Atru.chr7.1858 Acer truncatum HOM05D005831 ORTHO05D007007 6.7e-11 72.4 96 50.0
QL04p096475 Quercus lobata HOM05D000101 ORTHO05D000089 6.7e-11 72.4 86 47.7
TWI38G1843 Tripterygium wilfordii HOM05D005831 ORTHO05D007007 1.6e-09 67.8 121 37.2
TPR.G40658 Trifolium pratense HOM05D005831 ORTHO05D007007 6.3e-09 65.9 97 45.4
RcHm_v2.0_Chr4g0387071 Rosa chinensis HOM05D005831 ORTHO05D007007 6.9e-08 62.4 97 47.4
SHI11388 Sapria himalayana HOM05D005377 ORTHO05D003034 2.6e-07 60.5 33 90.9
SHI14093 Sapria himalayana HOM05D005377 ORTHO05D003034 2.6e-07 60.5 33 90.9
SHI32081 Sapria himalayana HOM05D005377 ORTHO05D003034 2.6e-07 60.5 33 90.9
SHI13506 Sapria himalayana HOM05D005377 ORTHO05D003034 3.4e-07 60.1 32 93.8
SHI32550 Sapria himalayana HOM05D005377 ORTHO05D003034 3.4e-07 60.1 32 93.8
SHI06197 Sapria himalayana HOM05D005377 ORTHO05D003034 7.7e-07 58.9 33 87.9
SHI13091 Sapria himalayana HOM05D005377 ORTHO05D003034 7.7e-07 58.9 33 90.9
SHI25893 Sapria himalayana HOM05D005377 ORTHO05D003034 1.3e-06 58.2 32 93.8
SHI41063 Sapria himalayana HOM05D000035 ORTHO05D000031 1.7e-06 57.8 33 84.8
SHI04661 Sapria himalayana HOM05D005377 ORTHO05D003034 2.2e-06 57.4 31 90.3
SHI00601 Sapria himalayana HOM05D000023 ORTHO05D000014 2.9e-06 57.0 60 55.0
SHI12499 Sapria himalayana HOM05D005377 ORTHO05D003034 2.9e-06 57.0 33 84.8
MCO12G124 Micromonas commoda HOM05D005831 ORTHO05D007007 3.8e-06 56.6 153 26.1
SHI34588 Sapria himalayana HOM05D005377 ORTHO05D003034 3.8e-06 56.6 35 80.0
SHI20117 Sapria himalayana HOM05D000002 ORTHO05D000001 5.0e-06 56.2 34 82.4
CBR_g34477 Chara braunii HOM05D005831 ORTHO05D007007 6.5e-06 55.8 61 36.1
SHI09524 Sapria himalayana HOM05D005377 ORTHO05D003034 8.5e-06 55.5 32 87.5
SHI20971 Sapria himalayana HOM05D000105 ORTHO05D000023 8.5e-06 55.5 32 87.5


User provided reference genes

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