Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 2.0e-158 562.4 287 100.0
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 3.1e-90 335.9 266 64.3
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 2.0e-89 333.2 266 65.0
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 4.5e-89 332.0 267 65.2
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 4.5e-89 332.0 265 64.9
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 2.9e-88 329.3 254 68.5
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 2.9e-88 329.3 266 62.8
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 3.8e-88 328.9 266 62.8
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 3.8e-88 328.9 266 65.0
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.1e-87 327.4 266 63.2
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 1.4e-87 327.0 265 62.6
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 2.4e-87 326.2 240 69.2
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 2.4e-87 326.2 252 67.5
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 2.4e-87 326.2 288 61.5
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.2e-87 325.5 267 62.5
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 4.2e-87 325.5 296 60.5
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 5.4e-87 325.1 267 62.2
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 5.4e-87 325.1 264 65.2
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 7.1e-87 324.7 264 64.0
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 9.3e-87 324.3 264 64.8
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 1.2e-86 323.9 264 64.8
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.6e-86 323.6 265 62.6
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.6e-86 323.6 264 64.0
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 2.1e-86 323.2 252 67.1
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 2.7e-86 322.8 258 65.1
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 2.7e-86 322.8 268 62.7
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 4.6e-86 322.0 256 65.2
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 6.0e-86 321.6 253 64.4
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 7.9e-86 321.2 256 66.0
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 7.9e-86 321.2 256 66.0
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 1.0e-85 320.9 245 67.8
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.3e-85 320.5 261 63.6
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.8e-85 320.1 261 64.0
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 1.8e-85 320.1 254 66.1
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 2.3e-85 319.7 246 67.1
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 3.9e-85 318.9 255 65.5
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 3.9e-85 318.9 270 62.2
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 5.1e-85 318.5 254 63.8
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 5.1e-85 318.5 263 62.7
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 6.7e-85 318.2 240 68.8
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.1e-84 317.4 252 63.9
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 1.1e-84 317.4 241 67.6
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 1.5e-84 317.0 246 66.3
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 1.5e-84 317.0 245 67.8
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.9e-84 316.6 266 64.3
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 2.5e-84 316.2 254 64.2
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.5e-84 316.2 241 68.9
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 3.3e-84 315.8 263 62.7
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 3.3e-84 315.8 242 66.5
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 4.3e-84 315.5 260 62.3
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 4.3e-84 315.5 255 64.7
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 4.3e-84 315.5 255 64.7
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 5.6e-84 315.1 245 66.5
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 5.6e-84 315.1 241 68.0
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 5.6e-84 315.1 247 65.6
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 7.4e-84 314.7 256 62.9
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 7.4e-84 314.7 252 62.7
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 7.4e-84 314.7 252 62.7
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 7.4e-84 314.7 246 66.3
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 7.4e-84 314.7 271 60.5
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 9.6e-84 314.3 247 65.2
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 1.3e-83 313.9 248 65.3
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 1.3e-83 313.9 246 65.0
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.6e-83 313.5 252 63.9
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 1.6e-83 313.5 264 64.8
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 1.6e-83 313.5 240 67.9
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.1e-83 313.2 243 66.3
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 2.1e-83 313.2 257 64.6
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 3.7e-83 312.4 251 62.9
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.7e-83 312.4 240 67.1
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 8.1e-83 311.2 243 66.3
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 8.1e-83 311.2 243 65.8
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 8.1e-83 311.2 256 62.5
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 1.4e-82 310.5 252 62.7
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.4e-82 310.5 240 66.2
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.8e-82 310.1 240 67.1
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 1.8e-82 310.1 244 65.2
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 3.1e-82 309.3 255 66.7
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 4.0e-82 308.9 247 63.2
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 5.3e-82 308.5 252 63.1
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 5.3e-82 308.5 252 63.1
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 5.3e-82 308.5 252 63.1
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 6.9e-82 308.1 252 61.5
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 6.9e-82 308.1 252 61.5
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 6.9e-82 308.1 251 62.2
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.2e-81 307.4 252 61.9
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 3.4e-81 305.8 241 66.0
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 3.4e-81 305.8 247 62.8
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 4.5e-81 305.4 253 63.6
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 5.8e-81 305.1 253 63.6
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 1.3e-80 303.9 244 63.1
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 1.7e-80 303.5 233 67.4
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 4.9e-80 302.0 241 66.0
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 6.4e-80 301.6 237 66.7
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 1.4e-79 300.4 261 59.8
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 1.9e-79 300.1 233 68.2
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 3.2e-79 299.3 240 64.2
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.5e-78 295.8 267 59.2
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 7.9e-78 294.7 245 63.7
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 7.9e-78 294.7 236 64.4
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 1.3e-77 293.9 249 63.9
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 2.3e-77 293.1 245 62.0
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.9e-76 290.0 241 63.1
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 2.5e-76 289.7 245 61.6
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 3.7e-75 285.8 243 60.5
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.1e-74 284.3 260 59.6
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 1.5e-73 280.4 246 57.3
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.5e-73 280.4 240 62.1
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.5e-73 278.9 256 58.6
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 1.4e-71 273.9 240 57.5
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 3.2e-71 272.7 217 65.9
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 4.2e-71 272.3 210 66.2
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 1.2e-70 270.8 211 65.9
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 4.6e-70 268.9 248 57.3
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 4.6e-70 268.9 244 57.0
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 7.9e-70 268.1 211 66.4
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 4.3e-68 262.3 211 65.4
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 2.8e-67 259.6 243 56.8
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 3.7e-67 259.2 210 64.3
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.4e-66 257.3 266 51.5
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.4e-66 256.5 212 63.2
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 9.0e-66 254.6 249 54.2
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 2.0e-65 253.4 233 57.5
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 8.5e-64 248.1 201 67.2
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 1.1e-63 247.7 240 57.5
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 9.4e-63 244.6 210 63.3
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 1.8e-61 240.4 238 57.1
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 2.0e-60 236.9 239 52.7
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.3e-59 234.2 214 61.2
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 2.8e-59 233.0 233 52.8
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 6.3e-59 231.9 201 63.2
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.4e-57 226.1 176 64.8
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 6.5e-56 221.9 252 48.8
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 7.9e-54 214.9 193 63.2
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.5e-47 193.4 267 41.6
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.2e-47 193.0 152 62.5
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 8.0e-46 188.3 158 63.3
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.3e-43 181.0 131 67.2
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 3.7e-43 179.5 156 62.8
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 2.6e-41 173.3 177 52.5
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.6e-38 164.1 141 61.7
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.0e-37 159.8 141 61.7
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 7.5e-36 155.2 144 59.7
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.5e-31 140.2 168 50.6
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.6e-30 136.3 108 60.2
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.6e-30 136.3 108 60.2
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.7e-30 136.0 117 62.4
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 3.4e-28 129.8 126 54.0
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.1e-22 110.5 74 70.3
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 8.0e-22 108.6 74 68.9
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.0e-21 108.2 206 35.0
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.0e-21 108.2 74 68.9
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.0e-21 108.2 74 68.9
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 1.4e-21 107.8 74 68.9
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 4.0e-21 106.3 166 42.2
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.4e-20 103.2 72 70.8
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 4.9e-19 99.4 66 77.3
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 1.7e-16 90.9 68 72.1
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 8.6e-16 88.6 68 69.1
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 4.7e-14 82.8 69 63.8
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 2.3e-13 80.5 92 46.7
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 3.7e-11 73.2 46 80.4
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 5.4e-10 69.3 64 57.8
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 1.6e-09 67.8 44 72.7
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 3.9e-08 63.2 210 27.1
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 5.0e-08 62.8 44 63.6
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.5e-07 60.5 64 48.4
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 1.6e-06 57.8 60 48.3


User provided reference genes

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