Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 0.0e+00 2743.8 1412 100.0
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 1.0e-255 887.9 1153 45.4
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 1.5e-254 884.0 1154 45.5
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 2.2e-250 870.2 1138 45.4
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 1.0e-247 861.3 1148 44.8
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 3.9e-247 859.4 1141 44.4
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 6.7e-247 858.6 1156 44.1
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 2.0e-246 857.1 1161 43.8
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 9.7e-246 854.7 1172 43.6
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 1.3e-245 854.4 1144 44.4
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 2.8e-245 853.2 1144 44.1
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 3.7e-245 852.8 1164 43.0
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 2.6e-243 846.7 1150 43.1
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 5.9e-243 845.5 1128 44.2
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 7.7e-243 845.1 1169 43.1
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 7.7e-243 845.1 1145 43.6
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 6.5e-242 842.0 1151 43.4
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 8.5e-242 841.6 1162 42.9
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 1.1e-241 841.3 1136 43.8
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 4.2e-241 839.3 1150 43.7
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 7.2e-241 838.6 1142 43.4
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 2.7e-240 836.6 1157 43.0
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 8.0e-240 835.1 1142 43.2
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 4.4e-238 829.3 1163 42.2
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 5.7e-238 828.9 1140 42.2
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 3.7e-237 826.2 1143 42.6
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 4.8e-237 825.9 1141 42.9
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 1.1e-236 824.7 1162 42.5
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.1e-236 824.7 1157 42.8
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 3.1e-236 823.2 1166 42.5
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 7.0e-236 822.0 1150 42.8
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 3.5e-235 819.7 1171 42.1
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 2.9e-234 816.6 1124 43.6
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 1.1e-233 814.7 1220 41.1
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 1.0e-231 808.1 1168 41.5
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 1.0e-231 808.1 1147 42.4
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 2.6e-230 803.5 1198 41.7
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 2.6e-230 803.5 1141 41.9
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 7.5e-230 802.0 1188 40.8
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 1.3e-229 801.2 1147 42.5
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 1.7e-229 800.8 1147 42.3
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 1.7e-229 800.8 1161 41.4
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 2.8e-229 800.0 1231 40.3
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 1.1e-228 798.1 1147 42.7
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 1.6e-227 794.3 1133 42.3
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 4.5e-227 792.7 1143 41.7
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 2.3e-226 790.4 1146 41.8
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 2.9e-226 790.0 1141 41.9
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 3.8e-226 789.6 1136 42.1
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 4.2e-225 786.2 1175 41.3
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 7.2e-225 785.4 1204 39.0
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 2.1e-224 783.9 1146 40.5
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 3.6e-224 783.1 1170 39.5
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 6.1e-224 782.3 1150 40.9
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 8.0e-224 781.9 1139 41.5
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 8.0e-224 781.9 1139 41.5
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 1.0e-223 781.6 1157 40.5
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 1.5e-222 777.7 1175 41.3
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 4.4e-222 776.2 1159 40.3
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 7.5e-222 775.4 1185 40.7
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 1.7e-221 774.2 1135 41.3
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 6.3e-221 772.3 1185 40.3
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 1.6e-219 767.7 1179 39.9
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 4.5e-219 766.1 1158 40.7
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 5.9e-219 765.8 1175 40.1
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 1.3e-218 764.6 1142 39.8
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.3e-218 764.6 1182 40.4
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 1.7e-218 764.2 1169 38.8
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 1.7e-218 764.2 1135 40.0
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 3.3e-217 760.0 1143 40.2
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 9.5e-217 758.4 1184 39.4
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 2.8e-216 756.9 1140 40.1
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 1.0e-215 755.0 1122 41.4
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 3.0e-215 753.4 1143 39.9
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 5.8e-214 749.2 1179 39.9
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 9.8e-214 748.4 1161 39.7
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 1.1e-212 745.0 1143 39.8
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 2.4e-212 743.8 1135 40.1
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 1.5e-206 724.5 1144 37.9
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 1.9e-204 717.6 1155 38.4
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 4.6e-203 713.0 1148 38.2
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 6.0e-203 712.6 1157 38.0
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 1.4e-199 701.4 1178 37.9
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 5.8e-198 696.0 1140 38.0
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 2.6e-174 617.5 1146 34.1
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 1.1e-167 595.5 1013 38.5
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 5.5e-164 583.2 922 40.1
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 7.6e-158 562.8 1005 35.4
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 4.6e-155 553.5 1149 34.4
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 1.7e-141 508.4 1253 31.7
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 9.1e-135 486.1 1237 30.5
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 8.8e-130 469.5 1134 29.9
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 5.2e-122 443.7 1212 28.5
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 5.0e-117 427.2 939 33.0
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 1.4e-114 419.1 801 34.8
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 2.6e-113 414.8 779 35.3
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 7.5e-105 386.7 1015 29.6
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 3.2e-103 381.3 396 49.2
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 6.8e-98 363.6 377 49.6
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 5.4e-95 354.0 415 47.7
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 3.1e-74 285.0 416 41.6
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 3.0e-69 268.5 365 43.0
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 7.4e-52 210.7 217 50.2
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 9.6e-52 210.3 273 42.5
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 2.5e-44 185.7 354 35.6
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 1.5e-36 159.8 121 61.2
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.2e-25 123.6 127 48.0
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 2.2e-24 119.4 110 51.8
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 4.2e-15 88.6 139 42.4
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 2.8e-11 75.9 72 55.6
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 1.1e-10 73.9 68 54.4
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 1.8e-10 73.2 90 47.8
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 2.2e-08 66.2 69 44.9
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 1.2e-06 60.5 44 63.6


User provided reference genes

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