Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 5.6e-110 401.0 204 100.0
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 8.7e-71 270.8 182 76.4
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 9.6e-70 267.3 191 71.7
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.6e-69 265.4 182 74.7
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.6e-69 265.4 182 74.7
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 8.1e-69 264.2 182 75.8
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 1.4e-68 263.5 182 74.7
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.8e-68 263.1 182 72.5
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 2.4e-68 262.7 182 72.5
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 3.1e-68 262.3 183 75.4
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 4.0e-68 261.9 182 75.8
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 4.0e-68 261.9 182 74.7
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 5.3e-68 261.5 182 72.5
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 5.3e-68 261.5 182 73.6
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 6.9e-68 261.2 182 72.0
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 9.0e-68 260.8 182 73.1
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 1.2e-67 260.4 182 73.1
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 1.5e-67 260.0 183 72.7
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.5e-67 260.0 182 73.1
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 1.5e-67 260.0 182 73.1
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.5e-67 260.0 182 73.6
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 2.6e-67 259.2 183 73.2
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 3.4e-67 258.8 182 73.6
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 3.4e-67 258.8 182 73.1
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 4.4e-67 258.5 184 73.9
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 4.4e-67 258.5 182 71.4
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 4.4e-67 258.5 182 71.4
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 5.8e-67 258.1 181 74.0
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.3e-66 256.9 182 73.1
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.3e-66 256.9 183 73.8
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.3e-66 256.9 182 73.6
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 2.2e-66 256.1 182 70.3
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.2e-66 256.1 182 70.9
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 2.2e-66 256.1 181 71.3
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 2.9e-66 255.8 182 70.9
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 3.8e-66 255.4 183 71.6
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 3.8e-66 255.4 182 73.6
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.8e-66 255.4 183 70.5
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 4.9e-66 255.0 182 70.3
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 4.9e-66 255.0 182 70.3
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 6.4e-66 254.6 182 70.3
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 6.4e-66 254.6 185 71.4
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 8.4e-66 254.2 182 70.3
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 8.4e-66 254.2 182 70.9
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 8.4e-66 254.2 182 70.9
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 8.4e-66 254.2 182 70.3
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.1e-65 253.8 183 71.0
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.1e-65 253.8 182 72.0
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.1e-65 253.8 182 72.0
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 1.4e-65 253.4 182 70.9
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.4e-65 253.4 182 72.0
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 1.4e-65 253.4 182 70.3
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 1.4e-65 253.4 182 70.3
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.9e-65 253.1 182 70.9
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 3.2e-65 252.3 181 69.6
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 3.2e-65 252.3 182 70.9
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 4.2e-65 251.9 181 69.6
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 4.2e-65 251.9 182 70.3
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 5.4e-65 251.5 182 71.4
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 5.4e-65 251.5 182 72.0
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 5.4e-65 251.5 182 70.9
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.4e-65 251.5 181 69.6
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 7.1e-65 251.1 182 69.8
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 7.1e-65 251.1 183 71.0
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 7.1e-65 251.1 182 70.3
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 7.1e-65 251.1 182 69.8
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 9.3e-65 250.8 183 73.2
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 9.3e-65 250.8 182 68.1
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.2e-64 250.4 182 70.9
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.6e-64 250.0 182 69.8
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 1.6e-64 250.0 181 69.6
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 2.1e-64 249.6 182 70.3
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 2.1e-64 249.6 182 70.9
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.1e-64 249.6 182 69.8
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 2.7e-64 249.2 217 62.7
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 3.5e-64 248.8 186 67.7
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.0e-63 247.3 183 69.9
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.0e-63 247.3 182 69.2
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 1.3e-63 246.9 182 71.4
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.7e-63 246.5 182 69.2
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 2.3e-63 246.1 182 67.6
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 2.3e-63 246.1 181 68.0
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 3.0e-63 245.7 182 68.7
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 6.6e-63 244.6 182 69.8
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.6e-63 244.6 182 67.6
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 1.5e-62 243.4 183 69.4
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.5e-62 243.4 182 66.5
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 1.5e-62 243.4 182 67.0
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.9e-62 243.0 182 66.5
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 3.3e-62 242.3 181 68.0
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 4.3e-62 241.9 182 67.6
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 7.4e-62 241.1 182 67.6
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.6e-62 240.7 181 67.4
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.6e-62 240.7 181 67.4
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 9.6e-62 240.7 185 68.1
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.3e-61 240.4 192 65.1
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.6e-61 240.0 182 67.0
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 1.6e-61 240.0 182 67.6
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.8e-61 239.2 180 67.2
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 2.8e-61 239.2 182 67.6
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 4.8e-61 238.4 185 65.9
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 4.8e-61 238.4 183 68.9
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.2e-61 238.0 183 66.7
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 6.2e-61 238.0 182 65.4
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 8.1e-61 237.7 191 65.4
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 1.4e-60 236.9 182 65.9
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 3.1e-60 235.7 182 64.8
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 5.3e-60 235.0 182 65.9
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.0e-60 234.2 180 66.1
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 1.2e-59 233.8 184 65.2
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 1.2e-59 233.8 182 65.9
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.5e-59 233.4 189 64.6
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 1.5e-59 233.4 182 66.5
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 2.0e-59 233.0 182 65.4
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 2.6e-59 232.6 182 67.6
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 2.6e-59 232.6 182 67.0
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.6e-59 232.6 181 64.6
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 2.6e-59 232.6 182 66.5
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 4.5e-59 231.9 179 66.5
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 4.5e-59 231.9 182 64.8
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 7.6e-59 231.1 181 64.1
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 7.6e-59 231.1 203 62.1
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 1.7e-58 229.9 182 65.4
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 1.7e-58 229.9 204 62.7
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 2.9e-58 229.2 181 63.5
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 2.9e-58 229.2 224 55.8
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 2.9e-58 229.2 182 65.4
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 3.8e-58 228.8 182 64.8
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 3.2e-57 225.7 199 60.8
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 1.6e-56 223.4 182 64.3
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 3.5e-56 222.2 183 63.4
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 1.3e-55 220.3 231 52.8
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 5.1e-55 218.4 175 62.9
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 5.6e-54 214.9 182 59.3
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 9.6e-54 214.2 177 63.3
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.3e-53 213.8 182 61.5
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 3.4e-51 205.7 187 58.3
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 5.8e-51 204.9 169 63.3
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 2.2e-50 203.0 153 69.3
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 1.4e-49 200.3 179 59.8
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 3.2e-49 199.1 182 58.8
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 7.1e-49 198.0 217 53.5
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.6e-45 186.8 182 54.9
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 2.2e-42 176.4 155 58.7
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 9.3e-41 171.0 99 89.9
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 2.7e-40 169.5 101 86.1
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 3.6e-40 169.1 202 50.0
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 3.0e-39 166.0 99 85.9
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.5e-38 163.7 97 84.5
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 4.3e-38 162.2 189 54.0
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.4e-36 157.1 99 80.8
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 3.8e-26 122.5 98 67.3
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 4.2e-25 119.0 103 59.2
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 9.4e-25 117.9 162 50.0
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 2.2e-21 106.7 79 70.9
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 8.2e-21 104.8 65 81.5
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 3.1e-20 102.8 77 62.3
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 5.3e-20 102.1 199 35.7
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 5.9e-19 98.6 186 35.5
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.2e-18 96.7 52 90.4
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 5.5e-17 92.0 69 55.1
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.2e-16 90.9 53 88.7
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 1.8e-15 87.0 53 86.8
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 3.1e-12 76.3 79 54.4
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 1.2e-11 74.3 175 33.7
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.0e-11 73.6 51 70.6
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.5e-11 72.8 53 67.9
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 3.5e-11 72.8 70 50.0
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 3.8e-10 69.3 56 53.6
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 1.4e-07 60.8 58 53.4
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.8e-07 60.5 103 41.7
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 2.0e-06 57.0 57 57.9


User provided reference genes

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