Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18668 Sapria himalayana HOM05D006038 ORTHO05D007547 5.9e-180 634.0 311 100.0
Manes.14G113700 Manihot esculenta HOM05D006038 ORTHO05D007547 1.7e-81 307.0 313 53.4
Sabra06G0137300 Salix brachista HOM05D006038 ORTHO05D007547 2.7e-79 299.7 320 52.2
Potri.006G180300 Populus trichocarpa HOM05D006038 ORTHO05D007547 1.7e-78 297.0 312 53.2
Thecc.09G154200 Theobroma cacao HOM05D006038 ORTHO05D007547 9.8e-74 281.2 320 49.1
QL02p094222 Quercus lobata HOM05D006038 ORTHO05D007547 1.8e-72 276.9 316 48.4
Atru.chr7.352 Acer truncatum HOM05D006038 ORTHO05D007547 2.1e-68 263.5 322 49.1
TWI63G0196 Tripterygium wilfordii HOM05D006038 ORTHO05D007547 1.4e-67 260.8 320 47.2
Cpa.g.sc199.14 Carica papaya HOM05D006038 ORTHO05D007547 1.8e-67 260.4 311 49.5
Cfa020781 Carpinus fangiana HOM05D006038 ORTHO05D007547 2.3e-67 260.0 308 47.1
Gohir.D05G008700 Gossypium hirsutum HOM05D006038 ORTHO05D007547 5.2e-67 258.8 322 47.8
Gorai.009G008900 Gossypium raimondii HOM05D006038 ORTHO05D007547 5.2e-67 258.8 322 47.8
Haze_19138 Corylus avellana HOM05D006038 ORTHO05D007547 8.9e-67 258.1 332 44.6
Gohir.A05G007900 Gossypium hirsutum HOM05D006038 ORTHO05D007547 2.0e-66 256.9 322 47.2
MD10G1281400 Malus domestica HOM05D006038 ORTHO05D007547 9.8e-66 254.6 308 46.1
CANSAT11G1787 Cannabis sativa HOM05D006038 ORTHO05D007547 2.2e-65 253.4 315 45.7
PGR114G0005 Punica granatum HOM05D006038 ORTHO05D007547 3.7e-65 252.7 322 46.0
PGR142G2424 Punica granatum HOM05D006038 ORTHO05D007547 3.7e-65 252.7 322 46.0
THA.LOC104803556 Tarenaya hassleriana HOM05D006038 ORTHO05D007547 6.3e-65 251.9 319 47.3
Ciclev10008825m.g Citrus clementina HOM05D006038 ORTHO05D007547 8.3e-65 251.5 310 49.0
CSS0009428 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.1e-64 251.1 313 45.7
Dinv42816 Davidia involucrata HOM05D006038 ORTHO05D007547 1.1e-64 251.1 315 45.4
Dinv43284 Davidia involucrata HOM05D006038 ORTHO05D007547 1.1e-64 251.1 315 45.4
CSS0019709 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.4e-64 250.0 313 45.4
CsaV3_2G007740 Cucumis sativus L. HOM05D006038 ORTHO05D007547 2.4e-64 250.0 309 46.6
Sed0013580 Sechium edule HOM05D006038 ORTHO05D007547 3.2e-64 249.6 311 46.6
MELO3C004111.2 Cucumis melo HOM05D006038 ORTHO05D007547 2.0e-63 246.9 309 46.6
Lalb_Chr13g0300671 Lupinus albus HOM05D006038 ORTHO05D007547 2.0e-63 246.9 305 47.5
Lj4g0023904 Lotus japonicus HOM05D006038 ORTHO05D007547 3.5e-63 246.1 318 45.9
CiPaw.15G164200 Carya illinoinensis HOM05D006038 ORTHO05D007547 4.6e-63 245.7 317 44.5
FAN17G0258 Fragaria x ananassa HOM05D006038 ORTHO05D007547 1.0e-62 244.6 312 43.9
Glyma.17G071100 Glycine max HOM05D006038 ORTHO05D007547 1.0e-62 244.6 306 47.4
Psat4g010160 Pisum sativum HOM05D006038 ORTHO05D007547 1.7e-62 243.8 318 45.0
Prupe.1G102000 Prunus persica HOM05D006038 ORTHO05D007547 2.3e-62 243.4 315 44.4
CSS0049632 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.9e-62 242.7 313 44.4
FAN22G1283 Fragaria x ananassa HOM05D006038 ORTHO05D007547 3.9e-62 242.7 311 43.4
Glyma.02G206900 Glycine max HOM05D006038 ORTHO05D007547 1.5e-61 240.7 318 46.5
FvH4_4g09770 Fragaria vesca HOM05D006038 ORTHO05D007547 2.5e-61 240.0 312 43.3
GSVIVG01023690001 Vitis vinifera HOM05D006038 ORTHO05D007547 4.3e-61 239.2 304 46.1
FAN07G2585 Fragaria x ananassa HOM05D006038 ORTHO05D007547 9.5e-61 238.0 317 42.9
Ca_21155_v3 Cicer arietinum L. HOM05D006038 ORTHO05D007547 2.8e-60 236.5 317 44.2
VMungo1215G1375 Vigna mungo HOM05D006038 ORTHO05D007547 6.1e-60 235.3 306 44.4
ClCG02G014260 Citrullus lanatus HOM05D006038 ORTHO05D007547 8.0e-60 235.0 327 42.8
A03p60370 Brassica napus HOM05D006038 ORTHO05D007547 1.0e-59 234.6 308 46.1
BraA03t15077Z Brassica rapa HOM05D006038 ORTHO05D007547 1.0e-59 234.6 308 46.1
Sp7g28720 Schrenkiella parvula HOM05D006038 ORTHO05D007547 1.0e-59 234.6 321 44.9
Rhsim03G0259500 Rhododendron simsii HOM05D006038 ORTHO05D007547 1.8e-59 233.8 305 44.3
AT4G30840 Arabidopsis thaliana HOM05D006038 ORTHO05D007547 3.1e-59 233.0 325 44.3
AL7G21280 Arabidopsis lyrata HOM05D006038 ORTHO05D007547 4.0e-59 232.6 323 44.3
CSS0006550 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 4.0e-59 232.6 304 44.4
Sopen07g002150 Solanum pennellii HOM05D006038 ORTHO05D007547 4.0e-59 232.6 323 43.7
C07p58240 Brassica napus HOM05D006038 ORTHO05D007547 5.2e-59 232.3 308 45.5
MBI15_g26068_MAGBIO Magnolia biondii HOM05D006038 ORTHO05D007547 5.2e-59 232.3 303 44.6
Medtr4g130280 Medicago truncatula HOM05D006038 ORTHO05D007547 6.8e-59 231.9 306 44.8
RcHm_v2.0_Chr4g0405491 Rosa chinensis HOM05D006038 ORTHO05D007547 6.8e-59 231.9 309 41.4
BcaNung02736 Brassica carinata HOM05D006038 ORTHO05D007547 8.9e-59 231.5 308 45.5
CARHR238700 Cardamine hirsuta HOM05D006038 ORTHO05D007547 1.2e-58 231.1 321 43.6
Lsat_1_v5_gn_8_64821 Lactuca sativa HOM05D006038 ORTHO05D007547 1.2e-58 231.1 307 42.7
PSO017G0013 Papaver somniferum HOM05D006038 ORTHO05D007547 1.2e-58 231.1 311 43.1
PGSC0003DMG400011212 Solanum tuberosum HOM05D006038 ORTHO05D007547 1.2e-58 231.1 323 43.0
BolC7t46282H Brassica oleracea HOM05D006038 ORTHO05D007547 1.5e-58 230.7 308 45.1
Cc06_g14480 Coffea canephora HOM05D006038 ORTHO05D007547 1.5e-58 230.7 305 44.3
Nn8g40105 Nelumbo nucifera HOM05D006038 ORTHO05D007547 1.5e-58 230.7 301 43.9
TPR.G22112 Trifolium pratense HOM05D006038 ORTHO05D007547 1.5e-58 230.7 306 44.8
Phvul.003G153400 Phaseolus vulgaris HOM05D006038 ORTHO05D007547 2.0e-58 230.3 306 44.1
Aqoxy7G02400 Aquilegia oxysepala HOM05D006038 ORTHO05D007547 2.6e-58 229.9 303 43.6
TAR625G0922 Trochodendron aralioides HOM05D006038 ORTHO05D007547 2.6e-58 229.9 303 44.2
Nitab4.5_0002809g0020 Nicotiana tabacum HOM05D006038 ORTHO05D007547 4.4e-58 229.2 326 43.3
PSO170G4900 Papaver somniferum HOM05D006038 ORTHO05D007547 9.8e-58 228.0 311 42.8
Solyc07g006010.3 Solanum lycopersicum HOM05D006038 ORTHO05D007547 1.7e-57 227.3 323 43.0
Carub.0007s0972 Capsella rubella HOM05D006038 ORTHO05D007547 2.2e-57 226.9 323 43.3
Peaxi162Scf00563g00418 Petunia axillaris HOM05D006038 ORTHO05D007547 3.7e-57 226.1 302 44.7
HanXRQChr06g0179781 Helianthus annuus HOM05D006038 ORTHO05D007547 4.9e-57 225.7 306 42.2
BcaNung01557 Brassica carinata HOM05D006038 ORTHO05D007547 1.1e-56 224.6 309 45.6
MSTRG.6162 Avicennia marina HOM05D006038 ORTHO05D007547 2.4e-56 223.4 304 44.1
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 5.4e-56 222.2 299 43.1
DCAR_020091 Daucus carota HOM05D006038 ORTHO05D007547 9.2e-56 221.5 312 42.9
ECA236G4218 Erigeron canadensis HOM05D006038 ORTHO05D007547 9.2e-56 221.5 304 40.8
Nitab4.5_0001036g0170 Nicotiana tabacum HOM05D006038 ORTHO05D007547 1.2e-55 221.1 331 41.1
Aa31LG2G19530 Aethionema arabicum HOM05D006038 ORTHO05D007547 3.5e-55 219.5 313 43.1
CDE04G0171 Ceratophyllum demersum HOM05D006038 ORTHO05D007547 4.6e-55 219.2 310 42.3
Actinidia38659 Actinidia chinensis HOM05D006038 ORTHO05D007547 6.0e-55 218.8 308 40.6
CAN.G1190.21 Capsicum annuum HOM05D006038 ORTHO05D007547 6.0e-55 218.8 304 44.4
Hund08960 Selenicereus undatus HOM05D006038 ORTHO05D007547 2.3e-54 216.9 303 44.9
EL10Ac8g18905 Beta vulgaris HOM05D006038 ORTHO05D007547 3.0e-54 216.5 304 41.4
Eucgr.K03188 Eucalyptus grandis HOM05D006038 ORTHO05D007547 5.0e-54 215.7 311 42.4
SGA_v2.0_scaffold265G46074 Striga asiatica HOM05D006038 ORTHO05D007547 4.7e-52 209.1 327 39.4
Migut.J01393 Erythranthe guttata HOM05D006038 ORTHO05D007547 1.4e-51 207.6 312 40.7
CSS0047764 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.2e-50 204.5 297 39.7
HPP92_020613 Vanilla planifolia HOM05D006038 ORTHO05D007547 1.3e-49 201.1 312 37.8
Sc14g0000990 Simmondsia chinensis HOM05D006038 ORTHO05D007547 1.7e-49 200.7 313 39.6
CSS0029746 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.4e-49 198.7 313 39.6
Os08g0266600 Oryza sativa ssp. japonica HOM05D006038 ORTHO05D007547 8.3e-49 198.4 305 41.6
Thhalv10025548m.g Eutrema salsugineum HOM05D006038 ORTHO05D007547 9.2e-48 194.9 284 43.0
ATR0580G061 Amborella trichopoda HOM05D006038 ORTHO05D007547 1.2e-47 194.5 299 39.1
Zm00001eb177980 Zea mays HOM05D006038 ORTHO05D007547 7.8e-47 191.8 307 40.4
COL.COLO4_05400 Corchorus olitorius HOM05D006038 ORTHO05D007547 1.3e-46 191.0 213 46.5
AUR62025374 Chenopodium quinoa HOM05D006038 ORTHO05D007547 5.2e-43 179.1 193 49.2
Cfa020780 Carpinus fangiana HOM05D006038 ORTHO05D007547 6.8e-43 178.7 205 47.3
Dinv41342 Davidia involucrata HOM05D006038 ORTHO05D007547 6.8e-43 178.7 218 46.8
AUR62028377 Chenopodium quinoa HOM05D006038 ORTHO05D007547 9.9e-42 174.9 192 49.0
SMO367G0193 Selaginella moellendorffii HOM05D006038 ORTHO05D007547 9.9e-42 174.9 306 37.3
arahy.Tifrunner.gnm1.ann1.3R6I6F Arachis hypogaea HOM05D006038 ORTHO05D007547 1.1e-37 161.4 219 41.6
AagrBONN_evm.TU.Sc2ySwM_117.2538 Anthoceros agrestis HOM05D006038 ORTHO05D007547 7.3e-37 158.7 320 33.8
vmacro06051 Vaccinium macrocarpon HOM05D006038 ORTHO05D007547 6.8e-35 152.1 316 35.1
Lj7A464T42 Lonicera japonica HOM05D006038 ORTHO05D007547 6.4e-33 145.6 210 38.6
CSS0009266 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.9e-32 144.1 208 38.9
CSS0013086 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.1e-30 136.0 198 38.4
CSS0027410 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.6e-30 135.6 210 38.6
Oeu027617.1 Olea europaea HOM05D006038 ORTHO05D007547 1.4e-24 117.9 123 49.6
A01p07320 Brassica napus HOM05D006038 ORTHO05D007547 5.4e-24 115.9 230 37.8
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 1.1e-21 108.2 346 26.6
CSS0024276 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 4.2e-16 89.7 188 34.6
CSS0022095 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.7e-15 87.0 80 56.2
Pp3c6_28770 Physcomitrium patens HOM05D006038 ORTHO05D007547 8.7e-14 82.0 134 39.6
SEGI_08614 Sequoiadendron giganteum HOM05D006038 ORTHO05D007547 1.5e-13 81.3 76 57.9
Lj7A464G38 Lonicera japonica HOM05D006038 ORTHO05D007547 8.1e-12 75.5 79 49.4


User provided reference genes

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