Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 0.0e+00 1744.6 878 100.0
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1142.5 810 69.6
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1138.6 810 69.1
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1137.5 808 69.3
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1136.3 810 69.3
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1133.2 810 67.9
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1128.2 809 69.5
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1127.9 807 68.3
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1126.7 809 68.5
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1126.3 816 68.1
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1121.3 809 68.0
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1117.4 809 68.7
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1117.4 809 69.0
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1114.8 810 67.3
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1114.4 809 68.5
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1114.4 809 68.5
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1112.8 809 68.9
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1108.6 809 67.0
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1104.4 809 67.7
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1103.6 810 67.3
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1101.7 809 68.5
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1099.7 808 67.5
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1099.3 809 68.1
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1093.6 809 66.3
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1091.3 809 65.8
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1091.3 810 66.4
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1090.1 809 67.2
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1089.7 809 66.5
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1084.3 809 66.6
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1083.9 809 65.9
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1083.9 809 66.9
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1083.9 809 66.5
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1082.0 809 65.5
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1080.5 809 65.1
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1079.7 810 66.3
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1078.9 809 66.0
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1075.8 808 64.9
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 5.9e-310 1067.4 810 65.2
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 3.8e-309 1064.7 810 64.9
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 1.5e-308 1062.8 810 65.1
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.5e-308 1062.8 809 63.9
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 1.6e-307 1059.3 810 65.1
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.4e-306 1056.2 809 63.4
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 5.2e-306 1054.3 809 63.9
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 8.9e-306 1053.5 810 63.3
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 1.2e-305 1053.1 814 64.7
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 2.6e-305 1052.0 809 63.4
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 3.4e-305 1051.6 814 64.7
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 4.4e-305 1051.2 809 63.4
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 9.8e-305 1050.0 822 63.7
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 1.3e-304 1049.7 810 64.2
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 1.7e-304 1049.3 809 62.8
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 2.2e-304 1048.9 809 63.8
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 2.2e-304 1048.9 810 63.2
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 2.9e-304 1048.5 809 62.5
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 8.3e-304 1047.0 815 62.5
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 1.1e-303 1046.6 809 62.7
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 1.4e-303 1046.2 808 63.6
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.8e-303 1045.8 808 63.0
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 1.8e-303 1045.8 809 62.5
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 1.8e-303 1045.8 807 63.4
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 3.2e-303 1045.0 809 62.4
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 3.2e-303 1045.0 882 59.9
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 5.4e-303 1044.3 809 62.9
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 1.2e-302 1043.1 809 63.5
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 1.2e-302 1043.1 768 67.2
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 3.5e-302 1041.6 809 63.2
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 3.5e-302 1041.6 809 62.9
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 1.0e-301 1040.0 809 62.7
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 1.0e-301 1040.0 809 62.7
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 1.3e-301 1039.6 809 62.8
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 3.0e-301 1038.5 809 62.3
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 3.9e-301 1038.1 809 63.3
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 5.0e-301 1037.7 809 62.4
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 2.5e-300 1035.4 809 62.9
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 2.5e-300 1035.4 809 62.9
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 1.6e-299 1032.7 809 62.7
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 2.8e-299 1031.9 810 62.2
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 2.8e-299 1031.9 810 62.6
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 3.6e-299 1031.6 809 62.7
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 4.7e-299 1031.2 810 62.0
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 8.0e-299 1030.4 810 62.5
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 8.0e-299 1030.4 810 62.5
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 1.4e-298 1029.6 819 62.4
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 1.4e-298 1029.6 814 61.8
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 1.8e-298 1029.2 810 61.9
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 1.8e-298 1029.2 810 61.5
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 4.0e-298 1028.1 810 61.9
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 1.5e-297 1026.2 810 62.0
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 1.5e-297 1026.2 809 61.9
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 2.6e-297 1025.4 810 62.1
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 7.5e-297 1023.8 810 62.2
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 7.5e-297 1023.8 810 62.2
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 1.7e-296 1022.7 848 60.5
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 2.2e-296 1022.3 809 60.9
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 6.4e-296 1020.8 809 62.8
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 6.4e-296 1020.8 809 62.4
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 8.3e-296 1020.4 809 61.1
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 8.3e-296 1020.4 815 61.7
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 2.4e-295 1018.8 810 61.5
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 3.2e-295 1018.5 811 61.8
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 5.4e-295 1017.7 813 61.0
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 7.0e-295 1017.3 809 62.1
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 7.0e-295 1017.3 809 61.8
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 1.2e-294 1016.5 811 61.8
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 1.2e-294 1016.5 813 60.8
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 1.2e-294 1016.5 809 61.6
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 2.0e-294 1015.8 811 61.7
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 2.0e-294 1015.8 810 62.5
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 3.0e-293 1011.9 810 61.6
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 1.1e-292 1010.0 813 61.7
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 1.1e-292 1010.0 813 61.7
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 4.3e-292 1008.1 808 62.0
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 6.2e-291 1004.2 809 61.7
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 7.1e-287 990.7 809 59.8
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 4.3e-284 981.5 810 61.0
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 1.6e-283 979.5 810 59.8
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 2.6e-281 972.2 810 60.1
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 3.2e-279 965.3 842 57.4
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 1.1e-274 950.3 809 58.2
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 4.6e-270 934.9 809 58.0
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 1.7e-264 916.4 810 56.9
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.6e-262 909.8 722 61.9
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 6.9e-258 894.4 837 55.1
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 1.8e-245 853.2 809 55.3
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 1.6e-235 820.1 820 51.7
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 2.5e-231 806.2 805 52.2
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 8.2e-227 791.2 542 70.1
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 1.0e-200 704.5 796 46.6
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.0e-188 663.7 531 62.7
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 5.6e-175 619.0 516 60.5
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 5.4e-170 602.4 698 45.1
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 5.2e-157 559.3 512 53.5
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 6.9e-157 558.9 363 74.7
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 1.3e-142 511.5 515 51.3
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 1.8e-133 481.1 296 80.4
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 1.3e-131 474.9 296 79.1
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 8.2e-126 455.7 282 77.0
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 1.2e-124 451.8 522 49.8
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 8.8e-104 382.5 257 71.2
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 7.2e-98 362.8 634 36.6
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 4.8e-94 350.1 638 35.9
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-93 347.4 466 41.6
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 2.3e-88 331.3 668 35.0
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 4.4e-87 327.0 632 33.7
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 7.0e-77 293.1 430 40.2
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.7e-70 270.8 241 56.8
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 9.2e-69 266.2 285 49.1
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 3.3e-58 231.1 251 48.6
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 4.4e-55 220.7 221 49.8
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 3.3e-50 204.5 184 55.4
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 2.1e-49 201.8 147 70.7
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 9.9e-47 193.0 127 70.1
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 1.1e-45 189.5 125 70.4
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 9.2e-45 186.4 127 70.9
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 1.6e-44 185.7 105 83.8
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 2.1e-41 175.3 125 68.0
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 7.8e-36 156.8 200 47.5
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.2e-28 132.9 155 45.2
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 1.8e-27 129.0 340 29.4
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 8.7e-27 126.7 85 74.1
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 7.4e-26 123.6 156 41.0
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 1.4e-21 109.4 82 63.4
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 1.8e-19 102.4 62 75.8
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 4.3e-18 97.8 63 71.4
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 2.1e-17 95.5 171 36.8
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 1.4e-16 92.8 52 78.8
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 4.0e-16 91.3 83 51.8
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 4.0e-16 91.3 139 37.4
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 2.0e-15 89.0 120 46.7
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 2.0e-15 89.0 120 46.7
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 2.2e-14 85.5 60 68.3
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.1e-12 79.0 60 63.3
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 4.6e-12 77.8 60 63.3
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 3.8e-06 58.2 37 70.3
Psat1g107320 Pisum sativum HOM05D001108 ORTHO05D001619 6.5e-06 57.4 103 33.0
Psat0s4854g0040 Pisum sativum HOM05D001108 ORTHO05D001619 8.5e-06 57.0 121 30.6


User provided reference genes

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