Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 0.0e+00 1753.4 908 100.0
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 2.3e-67 261.5 1257 27.5
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 1.1e-59 236.1 1260 26.6
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 6.8e-59 233.4 1260 24.7
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 7.5e-58 229.9 1256 26.0
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 3.6e-52 211.1 1253 25.9
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 4.3e-45 187.6 1226 25.0
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 4.7e-44 184.1 1244 24.9
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 8.7e-38 163.3 568 30.8
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 1.9e-37 162.2 1251 23.3
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 9.6e-37 159.8 1208 24.4
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 1.3e-36 159.5 568 30.5
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.1e-35 156.4 1301 23.2
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 6.9e-35 153.7 570 29.1
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 2.6e-34 151.8 1226 22.8
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 8.4e-33 146.7 1079 24.8
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.9e-32 145.6 547 29.6
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 2.4e-32 145.2 547 29.6
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.4e-32 144.1 548 28.6
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 7.1e-32 143.7 552 28.8
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 2.1e-31 142.1 549 28.4
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.1e-29 136.3 548 28.6
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.7e-28 131.3 548 28.1
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 6.2e-28 130.6 549 29.0
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.4e-27 129.4 545 27.9
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 2.4e-27 128.6 1269 23.9
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 3.1e-27 128.3 1075 23.3
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.1e-27 128.3 549 29.0
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.3e-27 127.5 549 29.0
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 7.6e-26 123.6 1239 22.6
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.2e-25 122.1 1104 23.6
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 2.4e-24 118.6 1261 22.4
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 9.3e-24 116.7 1287 22.0
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 9.3e-24 116.7 1203 23.2
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 4.6e-23 114.4 1165 22.9
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 5.1e-22 110.9 1129 23.8
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 1.5e-21 109.4 557 26.4
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 9.6e-21 106.7 746 24.1
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.3e-20 106.3 1129 22.9
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 6.2e-20 104.0 972 24.1
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 6.2e-20 104.0 524 29.0
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 1.8e-19 102.4 991 22.9
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.8e-19 102.4 1125 22.7
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 5.3e-19 100.9 1095 22.7
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 5.3e-19 100.9 1170 22.1
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 2.0e-18 99.0 939 22.9
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 2.0e-18 99.0 1126 22.8
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 3.4e-18 98.2 912 24.1
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 4.5e-18 97.8 482 26.8
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 5.8e-18 97.4 1301 22.6
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 7.6e-18 97.1 490 28.0
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 1.3e-17 96.3 1174 22.7
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 1.7e-17 95.9 1152 22.5
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 2.2e-17 95.5 1088 23.3
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 2.9e-17 95.1 1130 23.0
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 3.8e-17 94.7 522 25.5
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 3.8e-17 94.7 1131 22.8
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 6.5e-17 94.0 483 26.9
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 8.4e-17 93.6 968 23.3
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 1.1e-16 93.2 1060 22.7
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.9e-16 92.4 1043 22.5
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 1.9e-16 92.4 1145 23.1
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.5e-16 92.0 1187 23.3
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 4.2e-16 91.3 1129 23.3
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 5.5e-16 90.9 992 22.9
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 5.5e-16 90.9 257 33.1
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 5.5e-16 90.9 915 22.4
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 7.1e-16 90.5 981 23.3
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 9.3e-16 90.1 575 26.6
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 1.2e-15 89.7 1093 22.0
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 1.2e-15 89.7 1174 21.8
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 2.1e-15 89.0 985 23.7
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 2.1e-15 89.0 985 23.7
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 2.1e-15 89.0 523 26.2
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 2.7e-15 88.6 984 23.7
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 2.7e-15 88.6 917 22.2
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 4.6e-15 87.8 1058 21.8
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 7.9e-15 87.0 1006 21.2
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 1.0e-14 86.7 1155 22.3
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.0e-14 86.7 1134 22.1
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.0e-14 86.7 1146 23.2
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 1.3e-14 86.3 488 25.2
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 1.3e-14 86.3 1123 22.8
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 1.3e-14 86.3 989 22.8
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 1.8e-14 85.9 985 23.6
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 2.3e-14 85.5 1013 23.5
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 3.9e-14 84.7 963 22.4
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 3.9e-14 84.7 963 22.4
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 5.1e-14 84.3 503 26.2
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 6.7e-14 84.0 962 22.3
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 1.5e-13 82.8 487 25.5
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 3.3e-13 81.6 895 22.8
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.3e-13 81.6 152 36.2
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.3e-13 81.6 152 36.2
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.3e-13 81.6 152 36.2
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.3e-13 81.6 152 36.2
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.3e-13 81.6 152 36.2
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 4.3e-13 81.3 1070 22.1
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 7.4e-13 80.5 504 24.6
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.3e-12 79.7 507 23.9
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 1.3e-12 79.7 526 27.0
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.6e-12 79.3 501 25.0
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 3.7e-12 78.2 513 25.0
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 3.7e-12 78.2 890 23.7
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 8.2e-12 77.0 949 22.0
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 8.2e-12 77.0 468 27.1
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 1.1e-11 76.6 949 22.0
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 1.4e-11 76.3 489 22.3
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 2.4e-11 75.5 997 22.6
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 4.1e-11 74.7 979 22.7
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 4.1e-11 74.7 481 23.9
Lalb_Chr22g0352251 Lupinus albus HOM05D004021 ORTHO05D003767 5.3e-11 74.3 367 27.5
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 5.3e-11 74.3 935 22.5
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 1.2e-10 73.2 420 26.7
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 3.4e-10 71.6 491 25.7
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 3.4e-10 71.6 424 25.9
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.3e-09 69.7 557 25.3
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 1.7e-09 69.3 58 50.0
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.2e-09 68.9 562 23.3
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.2e-09 68.9 559 25.0
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 5.0e-09 67.8 980 22.7
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 5.0e-09 67.8 53 49.1
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 8.5e-09 67.0 447 26.4
Oeu015740.1 Olea europaea HOM05D004021 ORTHO05D003767 1.1e-08 66.6 400 26.5
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 4.2e-08 64.7 520 25.0
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 4.2e-08 64.7 466 27.5
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 7.2e-08 63.9 469 27.1
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 7.2e-08 63.9 568 24.3
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 9.4e-08 63.5 430 24.7
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 1.2e-07 63.2 951 21.6
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.2e-07 63.2 285 24.6
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 1.6e-07 62.8 57 45.6
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 2.1e-07 62.4 220 30.9
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 2.7e-07 62.0 553 22.2
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 2.7e-07 62.0 225 29.8
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 2.7e-07 62.0 83 39.8
CDE05G2697 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 3.6e-07 61.6 409 24.7
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 3.6e-07 61.6 290 27.2
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 3.6e-07 61.6 49 46.9
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 4.6e-07 61.2 563 22.7
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 6.1e-07 60.8 59 44.1
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 7.9e-07 60.5 112 32.1
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 1.4e-06 59.7 52 46.2
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 1.4e-06 59.7 53 50.9
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.3e-06 58.9 111 28.8
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 3.0e-06 58.5 54 42.6
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 3.0e-06 58.5 456 23.0
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 3.9e-06 58.2 466 26.4
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 5.1e-06 57.8 63 46.0
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 6.7e-06 57.4 793 21.7
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 8.8e-06 57.0 50 52.0
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 8.8e-06 57.0 64 42.2


User provided reference genes

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