Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 1.5e-161 572.8 278 100.0
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 8.1e-104 380.9 352 57.4
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 1.2e-102 377.1 357 55.5
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 3.4e-102 375.6 349 54.7
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 4.4e-102 375.2 353 54.7
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.7e-101 373.2 341 56.0
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.1e-100 370.5 349 55.6
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.4e-100 370.2 359 54.3
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 9.3e-100 367.5 350 53.7
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 1.2e-99 367.1 352 53.7
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.7e-99 365.9 349 54.4
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 7.8e-99 364.4 352 53.7
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 1.3e-98 363.6 356 52.5
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 2.3e-98 362.8 356 52.2
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 2.3e-98 362.8 349 54.2
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 3.0e-98 362.5 349 52.7
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 5.1e-98 361.7 352 53.7
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 6.6e-98 361.3 348 55.2
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 1.1e-97 360.5 358 52.8
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 4.3e-97 358.6 241 69.7
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.3e-97 358.6 351 52.1
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 4.3e-97 358.6 351 52.1
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 4.3e-97 358.6 357 52.1
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 5.6e-97 358.2 350 53.1
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 9.6e-97 357.5 353 52.1
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 9.6e-97 357.5 353 52.1
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.6e-96 356.7 350 53.4
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.1e-96 356.3 360 51.7
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.8e-96 355.9 348 53.7
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 2.8e-96 355.9 351 51.9
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 3.6e-96 355.5 349 53.3
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 4.8e-96 355.1 246 68.3
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 4.8e-96 355.1 351 53.8
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 1.4e-95 353.6 351 52.7
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 2.4e-95 352.8 349 52.1
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 3.1e-95 352.4 358 53.1
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 6.9e-95 351.3 353 51.6
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 6.9e-95 351.3 352 53.1
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 9.0e-95 350.9 381 49.6
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 2.0e-94 349.7 378 50.3
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 3.4e-94 349.0 356 51.7
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 4.5e-94 348.6 239 69.9
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 4.5e-94 348.6 348 52.3
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 7.6e-94 347.8 356 50.6
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 7.6e-94 347.8 357 51.5
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 9.9e-94 347.4 351 51.0
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 1.3e-93 347.1 354 51.1
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.3e-93 347.1 349 51.3
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.3e-93 347.1 241 71.4
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 1.7e-93 346.7 245 69.0
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 2.2e-93 346.3 355 51.8
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.9e-93 345.9 348 52.0
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 3.8e-93 345.5 355 50.7
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 4.9e-93 345.1 249 66.3
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 8.4e-93 344.4 356 50.3
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.4e-92 343.6 241 67.6
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 1.9e-92 343.2 349 51.0
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 2.4e-92 342.8 356 50.6
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 5.4e-92 341.7 359 50.1
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 7.1e-92 341.3 358 50.6
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 9.3e-92 340.9 241 66.0
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 9.3e-92 340.9 241 66.4
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 1.6e-91 340.1 354 52.0
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 3.5e-91 339.0 352 52.6
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 7.9e-91 337.8 359 50.7
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 1.3e-90 337.0 240 67.5
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 2.3e-90 336.3 241 67.6
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 5.1e-90 335.1 359 49.0
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 6.7e-90 334.7 356 49.4
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 1.5e-89 333.6 352 51.7
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 2.5e-89 332.8 333 52.3
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 1.3e-88 330.5 349 51.9
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 1.3e-88 330.5 357 48.7
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 1.6e-88 330.1 354 49.2
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 3.7e-88 328.9 352 49.7
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 3.7e-88 328.9 359 49.9
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 4.8e-88 328.6 357 49.0
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 4.8e-88 328.6 356 48.6
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 4.8e-88 328.6 357 49.3
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 6.2e-88 328.2 350 48.6
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 6.2e-88 328.2 349 48.7
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.1e-87 327.4 356 47.8
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 1.4e-87 327.0 351 49.0
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 4.0e-87 325.5 356 48.9
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 4.0e-87 325.5 349 51.0
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 5.3e-87 325.1 324 52.2
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 5.3e-87 325.1 361 50.4
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 5.3e-87 325.1 224 71.4
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 9.0e-87 324.3 346 48.6
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 1.2e-86 323.9 356 46.6
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.0e-86 323.2 361 49.9
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 3.4e-86 322.4 345 50.1
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 4.5e-86 322.0 261 60.9
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 1.3e-85 320.5 348 48.3
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 1.7e-85 320.1 373 47.2
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 2.9e-85 319.3 354 47.7
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 3.8e-85 318.9 356 46.9
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.1e-84 317.4 229 65.9
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.1e-84 317.4 349 48.4
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 1.9e-84 316.6 307 52.8
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 7.1e-84 314.7 357 47.6
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 9.3e-84 314.3 302 53.3
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 2.1e-83 313.2 357 46.8
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 4.6e-83 312.0 355 47.9
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 1.0e-82 310.8 349 47.3
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.3e-82 309.7 334 50.3
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.1e-81 307.4 242 62.4
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 4.3e-81 305.4 239 63.6
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 1.6e-80 303.5 329 48.0
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 3.7e-80 302.4 194 73.2
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 1.1e-79 300.8 302 51.7
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 3.1e-79 299.3 350 46.6
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 4.5e-78 295.4 303 48.8
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 4.9e-77 292.0 344 45.9
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.2e-76 289.3 302 50.7
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 2.1e-75 286.6 279 54.1
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 2.3e-74 283.1 196 68.9
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 6.7e-74 281.6 332 47.3
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 3.3e-73 279.3 319 48.3
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 5.7e-73 278.5 327 46.5
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.3e-72 277.3 220 64.5
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.7e-72 275.8 346 46.5
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 4.8e-72 275.4 206 64.1
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 7.7e-70 268.1 264 50.8
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 4.3e-65 252.3 265 50.6
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 1.4e-63 247.3 353 42.2
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 4.5e-62 242.3 242 52.1
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 7.7e-62 241.5 176 67.0
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 3.8e-61 239.2 322 41.6
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 8.5e-61 238.0 190 61.1
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 3.2e-60 236.1 345 42.0
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 9.4e-60 234.6 251 49.0
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 5.1e-58 228.8 390 36.2
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 7.4e-57 224.9 236 49.6
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 4.8e-56 222.2 385 35.8
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.1e-55 219.2 176 62.5
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 2.5e-52 209.9 245 45.7
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.0e-50 203.0 404 33.7
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 5.2e-50 202.2 160 63.8
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 8.8e-50 201.4 249 44.6
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 2.2e-48 196.8 248 44.0
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.8e-48 196.4 383 34.2
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 2.6e-46 189.9 124 68.5
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 1.3e-45 187.6 195 52.8
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 7.2e-44 181.8 175 47.4
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 2.3e-42 176.8 116 69.0
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 3.2e-36 156.4 295 36.6
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.1e-35 153.7 296 37.2
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 4.8e-32 142.5 84 77.4
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.1e-31 141.4 273 37.7
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 2.7e-30 136.7 89 69.7
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 4.2e-28 129.4 84 66.7
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 1.2e-27 127.9 106 61.3
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 5.9e-22 109.0 107 46.7
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 8.0e-19 98.6 73 64.4
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 1.2e-17 94.7 73 63.0
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 7.5e-17 92.0 77 61.0
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 3.7e-16 89.7 69 60.9
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 8.3e-16 88.6 69 60.9
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.1e-15 88.2 154 30.5
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 6.8e-10 68.9 103 33.0
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 7.5e-09 65.5 117 37.6
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 7.5e-09 65.5 40 80.0
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.7e-08 64.3 76 47.4
MD15G1096200 Malus domestica HOM05D004081 ORTHO05D025646 4.1e-07 59.7 46 58.7
Hund03407 Selenicereus undatus HOM05D004081 ORTHO05D025646 1.6e-06 57.8 48 54.2
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 2.1e-06 57.4 98 30.6


User provided reference genes

Program Settings