Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 1.9e-178 629.0 313 100.0
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.9e-109 399.8 287 70.4
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 6.1e-108 394.8 249 76.3
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 8.8e-107 391.0 249 75.9
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 4.4e-106 388.7 248 77.4
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 7.5e-106 387.9 248 76.2
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 7.5e-106 387.9 268 70.5
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 1.3e-105 387.1 248 75.8
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 3.7e-105 385.6 248 74.2
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 3.7e-105 385.6 263 73.4
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 2.4e-104 382.9 247 74.1
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 3.1e-104 382.5 249 72.7
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 4.1e-104 382.1 249 73.9
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 4.1e-104 382.1 249 74.3
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.6e-103 380.2 249 73.9
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 1.0e-102 377.5 249 73.5
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 1.7e-102 376.7 249 73.5
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 1.7e-102 376.7 249 73.5
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 2.2e-102 376.3 248 74.2
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 2.9e-102 375.9 249 73.5
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 2.9e-102 375.9 250 74.0
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 2.9e-102 375.9 248 74.2
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 5.0e-102 375.2 249 73.5
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 5.0e-102 375.2 246 73.2
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 1.1e-101 374.0 251 72.5
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 1.1e-101 374.0 248 71.4
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 1.1e-101 374.0 248 73.4
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 1.9e-101 373.2 249 71.5
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 2.5e-101 372.9 252 70.2
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 2.5e-101 372.9 248 73.4
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 2.5e-101 372.9 248 72.6
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 2.5e-101 372.9 253 71.5
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 2.5e-101 372.9 246 72.8
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 3.2e-101 372.5 249 73.1
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 4.2e-101 372.1 249 73.1
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 9.4e-101 370.9 252 70.2
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.2e-100 370.5 249 71.1
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.6e-100 370.2 282 64.9
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 1.6e-100 370.2 249 71.5
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.1e-100 369.8 249 72.7
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 2.7e-100 369.4 249 72.3
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 2.7e-100 369.4 249 72.3
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 2.7e-100 369.4 244 73.4
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 3.6e-100 369.0 257 71.2
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 3.6e-100 369.0 257 70.4
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 3.6e-100 369.0 257 70.4
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 1.0e-99 367.5 269 67.3
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 1.0e-99 367.5 256 69.1
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 1.8e-99 366.7 257 70.0
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.8e-99 366.7 248 74.6
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 3.0e-99 365.9 263 68.8
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.0e-99 365.5 256 71.1
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 8.8e-99 364.4 249 69.9
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 2.0e-98 363.2 238 72.3
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 4.4e-98 362.1 270 66.3
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 1.7e-97 360.1 255 71.0
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 1.1e-96 357.5 293 61.4
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 1.8e-96 356.7 245 69.4
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 3.1e-96 355.9 273 64.8
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 7.0e-96 354.8 249 68.7
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 9.1e-96 354.4 252 67.5
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 2.0e-95 353.2 246 70.3
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 2.0e-95 353.2 246 70.3
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 2.0e-95 353.2 246 71.1
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 7.7e-95 351.3 248 70.2
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 1.0e-94 350.9 251 69.7
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 1.3e-94 350.5 249 70.3
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 1.7e-94 350.1 270 65.6
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.9e-93 346.7 248 68.5
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 1.9e-93 346.7 249 68.7
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 4.2e-93 345.5 253 66.0
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 4.2e-93 345.5 245 68.6
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.2e-92 344.0 250 69.2
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 2.1e-92 343.2 257 67.7
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 2.8e-92 342.8 182 89.0
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 3.0e-91 339.3 263 65.8
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 6.8e-91 338.2 249 67.9
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 3.4e-90 335.9 247 68.4
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 1.3e-89 334.0 248 66.9
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 1.3e-89 334.0 248 64.9
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 2.8e-89 332.8 266 62.4
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 4.9e-89 332.0 261 64.4
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 6.3e-89 331.6 249 65.5
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 9.2e-88 327.8 251 65.3
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 1.6e-87 327.0 248 63.7
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 1.3e-86 323.9 241 67.6
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 1.1e-85 320.9 249 65.9
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.1e-77 294.3 207 67.6
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 1.9e-77 293.5 166 80.7
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 8.0e-76 288.1 166 78.9
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 4.0e-75 285.8 249 59.0
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 5.8e-74 282.0 249 57.4
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 1.7e-73 280.4 269 56.1
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 1.3e-70 270.8 239 60.7
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 6.6e-70 268.5 248 58.5
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 8.6e-70 268.1 251 57.4
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 8.6e-70 268.1 262 54.6
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 5.6e-69 265.4 249 54.6
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 2.1e-68 263.5 255 52.9
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 8.1e-68 261.5 288 50.7
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.8e-67 260.4 288 50.3
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 2.3e-67 260.0 248 55.2
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 1.2e-66 257.7 248 55.2
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 3.2e-64 249.6 252 52.8
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 5.4e-64 248.8 243 55.1
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 7.3e-61 238.4 251 52.2
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 1.2e-60 237.7 245 52.7
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 8.4e-57 224.9 166 68.1
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 6.0e-55 218.8 320 45.3
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 4.7e-52 209.1 175 62.3
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.4e-51 206.8 156 66.0
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 1.9e-48 197.2 253 44.3
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.3e-46 191.0 241 45.2
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 1.3e-46 191.0 289 40.1
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 1.3e-44 184.5 248 43.1
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 3.4e-42 176.4 212 46.7
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 9.9e-42 174.9 128 68.8
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 8.4e-33 145.2 85 80.0
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 6.0e-31 139.0 115 57.4
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 2.1e-28 130.6 79 78.5
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 4.8e-28 129.4 156 46.8
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 3.4e-26 123.2 131 51.9
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 1.8e-19 100.9 95 51.6
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 2.0e-18 97.4 164 38.4
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.3e-14 84.0 81 55.6
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.1e-13 81.6 84 50.0
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 3.3e-13 80.1 39 89.7
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 7.7e-10 68.9 84 42.9
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 1.7e-09 67.8 37 83.8
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 1.7e-09 67.8 37 83.8


User provided reference genes

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