Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 9.8e-43 176.4 90 100.0
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 6.6e-23 110.5 90 65.6
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 7.3e-22 107.1 88 59.1
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 6.2e-21 104.0 90 62.2
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 8.1e-21 103.6 90 61.1
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 1.1e-20 103.2 89 57.3
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.4e-20 102.8 90 62.2
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 3.1e-20 101.7 90 58.9
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 5.2e-20 100.9 90 57.8
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 8.9e-20 100.1 88 56.8
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 1.5e-19 99.4 90 57.8
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 2.0e-19 99.0 88 56.8
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 3.4e-19 98.2 84 58.3
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 1.7e-18 95.9 90 57.8
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 1.7e-18 95.9 87 56.3
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.9e-18 95.1 90 60.0
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 8.4e-18 93.6 87 55.2
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.1e-17 93.2 90 58.9
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.1e-17 93.2 90 55.6
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 3.2e-17 91.7 89 52.8
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 7.1e-17 90.5 89 57.3
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 2.1e-16 89.0 89 50.6
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 6.0e-16 87.4 90 55.6
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 6.0e-16 87.4 87 57.5
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 6.0e-16 87.4 87 57.5
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 6.0e-16 87.4 87 57.5
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 6.0e-16 87.4 87 57.5
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 6.0e-16 87.4 87 57.5
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 6.0e-16 87.4 87 57.5
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 6.0e-16 87.4 87 57.5
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 6.0e-16 87.4 87 57.5
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 1.0e-15 86.7 88 52.3
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 1.0e-15 86.7 90 55.6
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 1.7e-15 85.9 88 51.1
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 1.7e-15 85.9 88 51.1
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 3.0e-15 85.1 85 51.8
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 3.9e-15 84.7 72 55.6
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 3.9e-15 84.7 84 54.8
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 6.6e-15 84.0 109 47.7
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 1.1e-14 83.2 85 54.1
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 1.1e-14 83.2 85 54.1
TAR362G0228 Trochodendron aralioides HOM05D005842 ORTHO05D007077 1.1e-14 83.2 87 50.6
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.5e-14 82.8 87 50.6
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 1.9e-14 82.4 87 52.9
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 1.9e-14 82.4 90 50.0
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 2.5e-14 82.0 87 56.3
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 4.3e-14 81.3 89 51.7
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 4.3e-14 81.3 85 50.6
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 7.3e-14 80.5 85 50.6
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 7.3e-14 80.5 85 50.6
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 1.6e-13 79.3 84 48.8
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 1.6e-13 79.3 84 48.8
arahy.Tifrunner.gnm1.ann1.GMD4I9 Arachis hypogaea HOM05D005842 ORTHO05D007077 2.1e-13 79.0 85 51.8
arahy.Tifrunner.gnm1.ann1.JU0LD9 Arachis hypogaea HOM05D005842 ORTHO05D007077 2.8e-13 78.6 85 51.8
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 2.8e-13 78.6 109 45.0
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 3.6e-13 78.2 84 48.8
CsaV3_2G012270 Cucumis sativus L. HOM05D005842 ORTHO05D007077 4.7e-13 77.8 97 45.4
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 8.1e-13 77.0 85 48.2
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 3.1e-12 75.1 109 44.0
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 3.1e-12 75.1 109 44.0
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 3.1e-12 75.1 109 44.0
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 3.1e-12 75.1 87 47.1
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 6.9e-12 73.9 96 49.0
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 6.9e-12 73.9 90 46.7
Medtr1g045980 Medicago truncatula HOM05D005842 ORTHO05D007077 9.0e-12 73.6 128 35.9
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 9.0e-12 73.6 65 60.0
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 9.0e-12 73.6 71 50.7
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 1.2e-11 73.2 110 44.5
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 1.2e-11 73.2 110 44.5
Thhalv10026478m.g Eutrema salsugineum HOM05D005842 ORTHO05D007077 1.5e-11 72.8 109 43.1
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 1.5e-11 72.8 90 47.8
Lalb_Chr19g0128561 Lupinus albus HOM05D005842 ORTHO05D007077 2.0e-11 72.4 63 57.1
MBI10_g16785_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 2.0e-11 72.4 89 44.9
MBI10_g16786_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 2.0e-11 72.4 89 44.9
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 2.0e-11 72.4 90 47.8
Aa31LG9G4090 Aethionema arabicum HOM05D005842 ORTHO05D007077 4.4e-11 71.2 120 40.0
C03p53480 Brassica napus HOM05D005842 ORTHO05D007077 4.4e-11 71.2 72 50.0
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 4.4e-11 71.2 103 45.6
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 4.4e-11 71.2 87 46.0
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 5.8e-11 70.9 87 46.0
Sopen09g034020 Solanum pennellii HOM05D005842 ORTHO05D007077 5.8e-11 70.9 90 45.6
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 7.6e-11 70.5 60 58.3
A07p08140 Brassica napus HOM05D005842 ORTHO05D007077 1.3e-10 69.7 89 43.8
C07p12280 Brassica napus HOM05D005842 ORTHO05D007077 1.3e-10 69.7 89 43.8
BolC7t41695H Brassica oleracea HOM05D005842 ORTHO05D007077 1.3e-10 69.7 89 43.8
BraA07t28597Z Brassica rapa HOM05D005842 ORTHO05D007077 1.3e-10 69.7 89 43.8
Sed0010218 Sechium edule HOM05D005842 ORTHO05D007077 1.3e-10 69.7 81 45.7
Sed0006099 Sechium edule HOM05D005842 ORTHO05D007077 1.7e-10 69.3 87 44.8
BcaB04g17686 Brassica carinata HOM05D005842 ORTHO05D007077 2.2e-10 68.9 109 41.3
Psat6g108960 Pisum sativum HOM05D005842 ORTHO05D007077 2.2e-10 68.9 140 33.6
Sopen05g031940 Solanum pennellii HOM05D005842 ORTHO05D007077 2.2e-10 68.9 89 42.7
ATR0787G056 Amborella trichopoda HOM05D005842 ORTHO05D007077 2.9e-10 68.6 89 40.4
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 6.4e-10 67.4 89 42.7
BcaC07g37350 Brassica carinata HOM05D005842 ORTHO05D007077 8.4e-10 67.0 109 40.4
Cfa014832 Carpinus fangiana HOM05D005842 ORTHO05D007077 8.4e-10 67.0 112 40.2
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 8.4e-10 67.0 89 43.8
SalBow2G2733 Salvia bowleyana HOM05D005842 ORTHO05D007077 8.4e-10 67.0 82 42.7
CARHR219200 Cardamine hirsuta HOM05D005842 ORTHO05D007077 1.4e-09 66.2 109 41.3
Lalb_Chr03g0036861 Lupinus albus HOM05D005842 ORTHO05D007077 1.9e-09 65.9 60 55.0
AL7G43170 Arabidopsis lyrata HOM05D005842 ORTHO05D007077 2.4e-09 65.5 109 39.4
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 2.4e-09 65.5 72 47.2
A08p06740 Brassica napus HOM05D005842 ORTHO05D007077 3.2e-09 65.1 110 40.9
BolC8t47646H Brassica oleracea HOM05D005842 ORTHO05D007077 3.2e-09 65.1 110 40.9
BraA08t32692Z Brassica rapa HOM05D005842 ORTHO05D007077 3.2e-09 65.1 110 40.9
TPR.G23959 Trifolium pratense HOM05D005842 ORTHO05D007077 4.2e-09 64.7 63 54.0
AT4G13560 Arabidopsis thaliana HOM05D005842 ORTHO05D007077 5.4e-09 64.3 109 39.4
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 5.4e-09 64.3 72 45.8
Rhsim09G0044300 Rhododendron simsii HOM05D005842 ORTHO05D007077 1.2e-08 63.2 41 73.2
Carub.0007s2898 Capsella rubella HOM05D005842 ORTHO05D007077 2.1e-08 62.4 109 39.4
CANSAT78G1061 Cannabis sativa HOM05D005842 ORTHO05D007077 3.5e-08 61.6 104 36.5
MELO3C023065.2 Cucumis melo HOM05D005842 ORTHO05D007077 3.5e-08 61.6 85 40.0
Peaxi162Scf01007g00004 Petunia axillaris HOM05D005842 ORTHO05D007077 7.8e-08 60.5 89 40.4
BcaC02g09416 Brassica carinata HOM05D005842 ORTHO05D007077 1.7e-07 59.3 93 41.9
C04p42360 Brassica napus HOM05D005842 ORTHO05D007077 1.7e-07 59.3 102 41.2
THA.LOC104810501 Tarenaya hassleriana HOM05D008630 ORTHO05D010727 1.7e-07 59.3 86 45.3
Potri.001G172900 Populus trichocarpa HOM05D008630 ORTHO05D010727 2.3e-07 58.9 78 44.9
MELO3C023400.2 Cucumis melo HOM05D008630 ORTHO05D010727 3.9e-07 58.2 87 46.0
Sed0009523 Sechium edule HOM05D008630 ORTHO05D010727 5.1e-07 57.8 84 44.0
C08p07940 Brassica napus HOM05D005842 ORTHO05D007077 8.7e-07 57.0 44 70.5
CANSAT78G1849 Cannabis sativa HOM05D005842 ORTHO05D007077 1.1e-06 56.6 101 33.7
Aqoxy5G00093 Aquilegia oxysepala HOM05D005842 ORTHO05D007077 1.5e-06 56.2 85 38.8
AL1G60950 Arabidopsis lyrata HOM05D008630 ORTHO05D010727 1.5e-06 56.2 90 43.3
AT1G52680 Arabidopsis thaliana HOM05D008630 ORTHO05D010727 1.5e-06 56.2 90 43.3
Duzib151G0923 Durio zibethinus HOM05D005842 ORTHO05D007077 1.5e-06 56.2 90 42.2
HPP92_007288 Vanilla planifolia HOM05D005842 ORTHO05D007077 1.9e-06 55.8 109 38.5
THA.LOC104818037 Tarenaya hassleriana HOM05D008630 ORTHO05D010727 2.5e-06 55.5 86 45.3
HPP92_007287 Vanilla planifolia HOM05D005842 ORTHO05D007077 2.5e-06 55.5 100 39.0
A06p01690 Brassica napus HOM05D008630 ORTHO05D010727 3.3e-06 55.1 86 40.7
BraA06t23387Z Brassica rapa HOM05D008630 ORTHO05D010727 3.3e-06 55.1 86 40.7
AL3G39590 Arabidopsis lyrata HOM05D005842 ORTHO05D007077 4.3e-06 54.7 90 37.8
Solyc12g097050.2 Solanum lycopersicum HOM05D005842 ORTHO05D007077 4.3e-06 54.7 60 46.7
Sopen12g032850 Solanum pennellii HOM05D005842 ORTHO05D007077 4.3e-06 54.7 60 46.7
A08p01970 Brassica napus HOM05D008630 ORTHO05D010727 7.3e-06 53.9 91 40.7
Duzib235G0863 Durio zibethinus HOM05D008630 ORTHO05D010727 7.3e-06 53.9 76 46.1
BraA08t32251Z Brassica rapa HOM05D008630 ORTHO05D010727 9.6e-06 53.5 91 40.7
Carub.0003s2457 Capsella rubella HOM05D005842 ORTHO05D007077 9.6e-06 53.5 90 36.7
Sp3g22000 Schrenkiella parvula HOM05D005842 ORTHO05D007077 9.6e-06 53.5 90 36.7


User provided reference genes

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