Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18485 Sapria himalayana HOM05D003659 ORTHO05D004298 6.0e-166 587.4 291 100.0
RcHm_v2.0_Chr6g0299581 Rosa chinensis HOM05D003659 ORTHO05D004298 1.3e-104 383.6 285 67.4
Eucgr.C02663 Eucalyptus grandis HOM05D003659 ORTHO05D004298 8.5e-104 380.9 232 75.9
MELO3C016972.2 Cucumis melo HOM05D003659 ORTHO05D004298 7.2e-103 377.9 280 67.5
FAN20G3050 Fragaria x ananassa HOM05D003659 ORTHO05D004298 4.7e-102 375.2 284 65.8
FAN27G2887 Fragaria x ananassa HOM05D003659 ORTHO05D004298 3.9e-101 372.1 284 66.9
Dinv23291 Davidia involucrata HOM05D003659 ORTHO05D004298 5.1e-101 371.7 233 76.0
Actinidia18243 Actinidia chinensis HOM05D003659 ORTHO05D004298 7.4e-100 367.9 291 64.3
Actinidia25461 Actinidia chinensis HOM05D003659 ORTHO05D004298 7.4e-100 367.9 316 60.1
Hund00440 Selenicereus undatus HOM05D003659 ORTHO05D004298 3.7e-99 365.5 241 70.5
Nn2g12325 Nelumbo nucifera HOM05D003659 ORTHO05D004298 1.8e-98 363.2 271 66.4
MSTRG.9405 Avicennia marina HOM05D003659 ORTHO05D004298 2.4e-98 362.8 274 66.8
Lsat_1_v5_gn_1_32141 Lactuca sativa HOM05D003659 ORTHO05D004298 7.0e-98 361.3 236 73.7
Manes.16G128300 Manihot esculenta HOM05D003659 ORTHO05D004298 7.0e-98 361.3 218 77.1
Cfa013072 Carpinus fangiana HOM05D003659 ORTHO05D004298 9.1e-98 360.9 219 78.1
Manes.03G010100 Manihot esculenta HOM05D003659 ORTHO05D004298 1.2e-97 360.5 220 76.4
arahy.Tifrunner.gnm1.ann1.48QDBJ Arachis hypogaea HOM05D003659 ORTHO05D004298 1.5e-97 360.1 243 72.0
Glyma.06G062900 Glycine max HOM05D003659 ORTHO05D004298 1.5e-97 360.1 220 77.3
arahy.Tifrunner.gnm1.ann1.85LDPV Arachis hypogaea HOM05D003659 ORTHO05D004298 3.5e-97 359.0 243 71.6
TWI32G0040 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 3.5e-97 359.0 219 77.2
Potri.006G263200 Populus trichocarpa HOM05D003659 ORTHO05D004298 4.5e-97 358.6 218 75.7
Oeu027829.1 Olea europaea HOM05D003659 ORTHO05D004298 7.7e-97 357.8 278 64.0
Atru.chr7.2534 Acer truncatum HOM05D003659 ORTHO05D004298 1.0e-96 357.5 218 75.2
Sabra06G0205400 Salix brachista HOM05D003659 ORTHO05D004298 1.0e-96 357.5 218 76.1
QL02p019557 Quercus lobata HOM05D003659 ORTHO05D004298 1.7e-96 356.7 219 77.6
TWI34G1103 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 1.7e-96 356.7 219 77.6
CiPaw.08G006800 Carya illinoinensis HOM05D003659 ORTHO05D004298 5.0e-96 355.1 218 76.6
Lalb_Chr23g0268261 Lupinus albus HOM05D003659 ORTHO05D004298 1.4e-95 353.6 222 76.1
Nn8g39829 Nelumbo nucifera HOM05D003659 ORTHO05D004298 1.4e-95 353.6 229 74.2
ECA246G1998 Erigeron canadensis HOM05D003659 ORTHO05D004298 4.2e-95 352.1 284 62.0
Ciclev10009450m.g Citrus clementina HOM05D003659 ORTHO05D004298 5.5e-95 351.7 218 74.8
Prupe.1G392400 Prunus persica HOM05D003659 ORTHO05D004298 7.2e-95 351.3 218 77.1
ClCG05G016430 Citrullus lanatus HOM05D003659 ORTHO05D004298 1.2e-94 350.5 218 75.7
PGR044G1948 Punica granatum HOM05D003659 ORTHO05D004298 2.1e-94 349.7 218 72.9
CsaV3_4G036690 Cucumis sativus L. HOM05D003659 ORTHO05D004298 6.1e-94 348.2 218 74.3
Nitab4.5_0001454g0190 Nicotiana tabacum HOM05D003659 ORTHO05D004298 1.0e-93 347.4 243 69.1
AT2G25110 Arabidopsis thaliana HOM05D003659 ORTHO05D004298 1.4e-93 347.1 217 75.6
Carub.0004s0471 Capsella rubella HOM05D003659 ORTHO05D004298 2.3e-93 346.3 217 75.6
THA.LOC104803632 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 2.3e-93 346.3 219 74.0
GSVIVG01035892001 Vitis vinifera HOM05D003659 ORTHO05D004298 2.3e-93 346.3 218 75.2
AL4G16270 Arabidopsis lyrata HOM05D003659 ORTHO05D004298 3.0e-93 345.9 217 75.6
MD15G1038400 Malus domestica HOM05D003659 ORTHO05D004298 3.0e-93 345.9 218 77.5
CSS0004565 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 6.7e-93 344.7 218 73.9
CSS0014874 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 6.7e-93 344.7 218 73.9
Thhalv10000317m.g Eutrema salsugineum HOM05D003659 ORTHO05D004298 6.7e-93 344.7 218 75.2
SGA_v2.0_scaffold5G02776 Striga asiatica HOM05D003659 ORTHO05D004298 6.7e-93 344.7 280 62.9
A04p19520 Brassica napus HOM05D003659 ORTHO05D004298 1.1e-92 344.0 217 75.1
BraA04t17546Z Brassica rapa HOM05D003659 ORTHO05D004298 1.1e-92 344.0 217 75.1
TAR625G1087 Trochodendron aralioides HOM05D003659 ORTHO05D004298 1.1e-92 344.0 233 72.5
FvH4_2g40990 Fragaria vesca HOM05D003659 ORTHO05D004298 3.3e-92 342.4 218 73.9
Aa31LG7G12130 Aethionema arabicum HOM05D003659 ORTHO05D004298 4.4e-92 342.0 216 73.6
Aqoxy7G01595 Aquilegia oxysepala HOM05D003659 ORTHO05D004298 4.4e-92 342.0 220 72.7
CARHR116580 Cardamine hirsuta HOM05D003659 ORTHO05D004298 4.4e-92 342.0 217 73.7
C04p55110 Brassica napus HOM05D003659 ORTHO05D004298 5.7e-92 341.7 217 75.1
BolC4t27050H Brassica oleracea HOM05D003659 ORTHO05D004298 5.7e-92 341.7 217 75.1
vmacro19047 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 5.7e-92 341.7 218 74.3
BcaB06g28036 Brassica carinata HOM05D003659 ORTHO05D004298 7.4e-92 341.3 218 73.4
Sp4g04120 Schrenkiella parvula HOM05D003659 ORTHO05D004298 7.4e-92 341.3 217 73.7
PSO170G6877 Papaver somniferum HOM05D003659 ORTHO05D004298 9.7e-92 340.9 219 74.9
BcaC02g08370 Brassica carinata HOM05D003659 ORTHO05D004298 1.3e-91 340.5 217 74.7
HPP92_004679 Vanilla planifolia HOM05D003659 ORTHO05D004298 1.3e-91 340.5 218 72.9
PSO017G1057 Papaver somniferum HOM05D003659 ORTHO05D004298 1.7e-91 340.1 219 74.4
BolC8t51458H Brassica oleracea HOM05D003659 ORTHO05D004298 2.2e-91 339.7 218 72.9
CSS0027457 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 2.2e-91 339.7 218 73.9
CSS0033149 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 2.2e-91 339.7 218 73.9
TAR625G1310 Trochodendron aralioides HOM05D003659 ORTHO05D004298 2.8e-91 339.3 218 75.2
Glyma.04G061900 Glycine max HOM05D003659 ORTHO05D004298 3.7e-91 339.0 185 83.2
Sed0006058 Sechium edule HOM05D003659 ORTHO05D004298 3.7e-91 339.0 192 79.7
Lj9A494G39 Lonicera japonica HOM05D003659 ORTHO05D004298 4.8e-91 338.6 288 59.4
Cc04_g05030 Coffea canephora HOM05D003659 ORTHO05D004298 1.1e-90 337.4 218 72.5
HanXRQChr04g0098481 Helianthus annuus HOM05D003659 ORTHO05D004298 1.8e-90 336.7 218 73.9
Migut.D01114 Erythranthe guttata HOM05D003659 ORTHO05D004298 2.4e-90 336.3 221 73.3
Thecc.09G017100 Theobroma cacao HOM05D003659 ORTHO05D004298 2.4e-90 336.3 219 73.1
Actinidia08946 Actinidia chinensis HOM05D003659 ORTHO05D004298 3.1e-90 335.9 218 72.0
Gorai.001G037100 Gossypium raimondii HOM05D003659 ORTHO05D004298 3.1e-90 335.9 222 73.0
CAN.G407.57 Capsicum annuum HOM05D003659 ORTHO05D004298 4.1e-90 335.5 219 72.1
AUR62026991 Chenopodium quinoa HOM05D003659 ORTHO05D004298 4.1e-90 335.5 217 71.4
AUR62030831 Chenopodium quinoa HOM05D003659 ORTHO05D004298 4.1e-90 335.5 217 69.6
Hund06525 Selenicereus undatus HOM05D003659 ORTHO05D004298 4.1e-90 335.5 217 73.3
EL10Ac9g22216 Beta vulgaris HOM05D003659 ORTHO05D004298 5.3e-90 335.1 217 70.0
ECA247G2368 Erigeron canadensis HOM05D003659 ORTHO05D004298 7.0e-90 334.7 223 72.2
Rhsim08G0207200 Rhododendron simsii HOM05D003659 ORTHO05D004298 1.2e-89 334.0 219 71.7
SEGI_01700 Sequoiadendron giganteum HOM05D003659 ORTHO05D004298 1.2e-89 334.0 240 65.8
ATR0739G101 Amborella trichopoda HOM05D003659 ORTHO05D004298 1.6e-89 333.6 214 74.3
Gohir.D07G035300 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.6e-89 333.6 222 72.5
Oeu060128.1 Olea europaea HOM05D003659 ORTHO05D004298 1.6e-89 333.6 219 70.8
Rhsim12G0187700 Rhododendron simsii HOM05D003659 ORTHO05D004298 1.6e-89 333.6 218 72.0
vmacro16858 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 1.6e-89 333.6 218 72.0
GSVIVG01034217001 Vitis vinifera HOM05D003659 ORTHO05D004298 1.6e-89 333.6 216 73.1
Duzib168G1659 Durio zibethinus HOM05D003659 ORTHO05D004298 2.6e-89 332.8 219 72.6
Gohir.A07G031500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 2.6e-89 332.8 222 72.5
Lj5A80T55 Lonicera japonica HOM05D003659 ORTHO05D004298 2.6e-89 332.8 218 70.2
Gohir.A05G058400 Gossypium hirsutum HOM05D003659 ORTHO05D004298 3.5e-89 332.4 187 80.7
Potri.018G020700 Populus trichocarpa HOM05D003659 ORTHO05D004298 3.5e-89 332.4 185 81.6
PGSC0003DMG400014120 Solanum tuberosum HOM05D003659 ORTHO05D004298 3.5e-89 332.4 218 71.6
Migut.I00701 Erythranthe guttata HOM05D003659 ORTHO05D004298 4.5e-89 332.0 220 72.7
Gorai.009G061600 Gossypium raimondii HOM05D003659 ORTHO05D004298 4.5e-89 332.0 187 80.2
Duzib150G0849 Durio zibethinus HOM05D003659 ORTHO05D004298 5.9e-89 331.6 221 72.9
Lj1g0004529 Lotus japonicus HOM05D003659 ORTHO05D004298 5.9e-89 331.6 189 80.4
MSTRG.11175 Avicennia marina HOM05D003659 ORTHO05D004298 7.7e-89 331.3 219 70.8
Phvul.009G088100 Phaseolus vulgaris HOM05D003659 ORTHO05D004298 7.7e-89 331.3 183 81.4
Sed0005308 Sechium edule HOM05D003659 ORTHO05D004298 7.7e-89 331.3 186 80.6
Gohir.D05G060500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.0e-88 330.9 185 81.1
Lalb_Chr08g0244391 Lupinus albus HOM05D003659 ORTHO05D004298 3.8e-88 328.9 190 80.5
Psat5g032160 Pisum sativum HOM05D003659 ORTHO05D004298 3.8e-88 328.9 221 71.0
Solyc03g117020.4 Solanum lycopersicum HOM05D003659 ORTHO05D004298 3.8e-88 328.9 215 72.1
Sopen03g035920 Solanum pennellii HOM05D003659 ORTHO05D004298 3.8e-88 328.9 215 72.1
Lsat_1_v5_gn_5_8201 Lactuca sativa HOM05D003659 ORTHO05D004298 5.0e-88 328.6 219 71.2
MSTRG.22794 Avicennia marina HOM05D003659 ORTHO05D004298 6.5e-88 328.2 218 70.2
Haze_21430 Corylus avellana HOM05D003659 ORTHO05D004298 8.5e-88 327.8 269 62.8
Peaxi162Scf00332g00435 Petunia axillaris HOM05D003659 ORTHO05D004298 1.1e-87 327.4 219 69.4
unitig_61.g26227 Utricularia gibba HOM05D003659 ORTHO05D004298 3.2e-87 325.9 279 58.8
Cpa.g.sc127.19 Carica papaya HOM05D003659 ORTHO05D004298 9.4e-87 324.3 184 79.3
Ah.01g006880 Amaranthus hybridus HOM05D003659 ORTHO05D004298 1.2e-86 323.9 253 62.5
DCAR_021366 Daucus carota HOM05D003659 ORTHO05D004298 1.2e-86 323.9 223 69.5
unitig_0.g1106 Utricularia gibba HOM05D003659 ORTHO05D004298 2.7e-86 322.8 309 54.7
A09p55870 Brassica napus HOM05D003659 ORTHO05D004298 3.6e-86 322.4 218 70.2
BraA09t40990Z Brassica rapa HOM05D003659 ORTHO05D004298 3.6e-86 322.4 218 70.2
BcaC07g40890 Brassica carinata HOM05D003659 ORTHO05D004298 4.7e-86 322.0 218 70.2
C08p38860 Brassica napus HOM05D003659 ORTHO05D004298 4.7e-86 322.0 218 70.2
Os08g0440500 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 4.7e-86 322.0 221 69.7
MD08G1057800 Malus domestica HOM05D003659 ORTHO05D004298 6.1e-86 321.6 184 79.3
Os08g0278900 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 1.0e-85 320.9 219 68.5
Medtr3g106130 Medicago truncatula HOM05D003659 ORTHO05D004298 3.0e-85 319.3 241 66.4
COL.COLO4_03628 Corchorus olitorius HOM05D003659 ORTHO05D004298 7.5e-84 314.7 173 81.5
DCAR_025575 Daucus carota HOM05D003659 ORTHO05D004298 7.5e-84 314.7 220 68.6
HanXRQChr08g0235851 Helianthus annuus HOM05D003659 ORTHO05D004298 9.7e-84 314.3 222 65.8
Zm00001eb179820 Zea mays HOM05D003659 ORTHO05D004298 2.4e-82 309.7 218 67.0
Oeu004335.5 Olea europaea HOM05D003659 ORTHO05D004298 4.1e-82 308.9 243 62.6
CDE05G0949 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 7.0e-82 308.1 185 76.8
HanXRQChr05g0153781 Helianthus annuus HOM05D003659 ORTHO05D004298 7.0e-82 308.1 213 68.5
Zm00001eb041170 Zea mays HOM05D003659 ORTHO05D004298 1.2e-81 307.4 218 66.5
SalBow7G4756 Salvia bowleyana HOM05D003659 ORTHO05D004298 5.9e-81 305.1 174 78.7
Sc12g0008380 Simmondsia chinensis HOM05D003659 ORTHO05D004298 8.5e-80 301.2 191 73.8
arahy.Tifrunner.gnm1.ann1.7GH63I Arachis hypogaea HOM05D003659 ORTHO05D004298 3.6e-78 295.8 214 65.9
arahy.Tifrunner.gnm1.ann1.Q7FMUW Arachis hypogaea HOM05D003659 ORTHO05D004298 1.4e-77 293.9 214 65.4
Pp3c12_21450 Physcomitrium patens HOM05D003659 ORTHO05D004298 4.4e-76 288.9 229 59.0
CDE02G2060 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 1.7e-75 287.0 172 75.0
Mapoly0146s0027 Marchantia polymorpha HOM05D003659 ORTHO05D004298 1.8e-74 283.5 188 66.5
Ah.16g104980 Amaranthus hybridus HOM05D003659 ORTHO05D004298 3.5e-73 279.3 193 67.4
Pp3c4_7140 Physcomitrium patens HOM05D003659 ORTHO05D004298 5.0e-72 275.4 190 66.3
Lsat_1_v5_gn_4_87041 Lactuca sativa HOM05D003659 ORTHO05D004298 6.6e-72 275.0 219 59.8
TAR636G3496 Trochodendron aralioides HOM05D003659 ORTHO05D004298 1.5e-68 263.8 313 50.8
SMO340G0294 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 2.6e-68 263.1 182 66.5
SMO304G0007 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 5.4e-66 255.4 207 59.9
CBR_g38858 Chara braunii HOM05D003659 ORTHO05D004298 1.6e-65 253.8 188 61.7
Pp3c9_3320 Physcomitrium patens HOM05D003659 ORTHO05D004298 3.9e-64 249.2 269 49.4
TPR.G3109 Trifolium pratense HOM05D003659 ORTHO05D004298 5.2e-61 238.8 221 58.8
HPP92_010392 Vanilla planifolia HOM05D003659 ORTHO05D004298 3.4e-60 236.1 166 64.5
Dinv21405 Davidia involucrata HOM05D003659 ORTHO05D004298 3.6e-54 216.1 124 75.0
AUR62012468 Chenopodium quinoa HOM05D003659 ORTHO05D004298 2.3e-53 213.4 230 51.3
Nitab4.5_0026787g0010 Nicotiana tabacum HOM05D003659 ORTHO05D004298 6.4e-51 205.3 186 59.1
Cre13.g571750 Chlamydomonas reinhardtii HOM05D003659 ORTHO05D004298 1.1e-47 194.5 181 51.4
AUR62031594 Chenopodium quinoa HOM05D003659 ORTHO05D004298 5.6e-47 192.2 182 52.7
MCO11G512 Micromonas commoda HOM05D003659 ORTHO05D004298 7.3e-47 191.8 185 49.7
THA.LOC104804845 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 6.2e-46 188.7 103 78.6
Cc07_g20440 Coffea canephora HOM05D003659 ORTHO05D004298 1.5e-39 167.5 121 69.4
Cc08_g06110 Coffea canephora HOM05D003659 ORTHO05D004298 4.3e-39 166.0 121 68.6
Cc00_g05940 Coffea canephora HOM05D003659 ORTHO05D004298 2.1e-38 163.7 121 66.9
TPR.G40670 Trifolium pratense HOM05D003659 ORTHO05D004298 2.1e-38 163.7 87 80.5
Cc10_g10650 Coffea canephora HOM05D003659 ORTHO05D004298 1.1e-37 161.4 124 66.1
Cc10_g09910 Coffea canephora HOM05D003659 ORTHO05D004298 1.8e-37 160.6 121 65.3
Cc05_g03490 Coffea canephora HOM05D003659 ORTHO05D004298 4.0e-37 159.5 117 69.2
arahy.Tifrunner.gnm1.ann1.K0Y0BK Arachis hypogaea HOM05D003659 ORTHO05D004298 1.5e-36 157.5 109 67.0
PRCOL_00006403 Prasinoderma coloniale HOM05D003659 ORTHO05D004298 9.9e-36 154.8 177 40.7
Cc05_g01640 Coffea canephora HOM05D003659 ORTHO05D004298 2.2e-35 153.7 121 62.8
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 3.8e-35 152.9 108 71.3
Actinidia36884 Actinidia chinensis HOM05D003659 ORTHO05D004298 5.6e-31 139.0 109 63.3
EL10Ac2g04128 Beta vulgaris HOM05D003659 ORTHO05D004298 5.6e-31 139.0 148 49.3
Cc00_g06440 Coffea canephora HOM05D003659 ORTHO05D004298 5.3e-29 132.5 121 58.7
Cc08_g07620 Coffea canephora HOM05D003659 ORTHO05D004298 9.0e-29 131.7 76 80.3
FvH4_3g15950 Fragaria vesca HOM05D003659 ORTHO05D004298 5.8e-28 129.0 121 54.5
Ca_15770_v3 Cicer arietinum L. HOM05D003659 ORTHO05D004298 9.9e-28 128.3 67 83.6
Cc00_g21920 Coffea canephora HOM05D003659 ORTHO05D004298 7.8e-25 118.6 76 75.0
BraA10t44716Z Brassica rapa HOM05D001880 ORTHO05D004730 1.5e-23 114.4 62 75.8
FAN11G3099 Fragaria x ananassa HOM05D003659 ORTHO05D004298 1.9e-23 114.0 101 57.4
HPP92_010427 Vanilla planifolia HOM05D003659 ORTHO05D004298 3.6e-22 109.8 101 56.4
AagrBONN_evm.TU.Sc2ySwM_117.1898 Anthoceros agrestis HOM05D003659 ORTHO05D004298 1.7e-19 100.9 127 44.1
Haze_27667 Corylus avellana HOM05D003659 ORTHO05D004298 3.2e-18 96.7 117 40.2
Hma1.2p1_0302F.1_g118750 Hydrangea macrophylla HOM05D003659 ORTHO05D004298 1.3e-16 91.3 61 67.2
SHI37098 Sapria himalayana HOM05D003659 ORTHO05D004298 6.7e-16 89.0 58 74.1
SHI48633 Sapria himalayana HOM05D003659 ORTHO05D004298 8.1e-14 82.0 48 83.3
Cfa026278 Carpinus fangiana HOM05D003659 ORTHO05D121859 2.4e-13 80.5 199 31.7
Cfa024316 Carpinus fangiana HOM05D003659 ORTHO05D124421 2.2e-11 73.9 194 32.0
SHI20750 Sapria himalayana HOM05D003659 ORTHO05D004298 6.0e-09 65.9 48 64.6
A10p26590 Brassica napus HOM05D001880 ORTHO05D004730 4.3e-07 59.7 44 56.8
CAN.G1490.7 Capsicum annuum HOM05D003659 ORTHO05D004298 8.2e-06 55.5 43 60.5


User provided reference genes

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