Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 2.5e-130 468.8 238 100.0
SHI15560 Sapria himalayana HOM05D000105 ORTHO05D000023 2.1e-23 113.6 86 74.4
SHI00754 Sapria himalayana HOM05D000603 ORTHO05D003510 9.0e-19 98.2 85 67.1
SHI33167 Sapria himalayana HOM05D000023 ORTHO05D000014 6.4e-17 92.0 92 66.3
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 6.0e-15 85.5 85 72.9
SHI34644 Sapria himalayana HOM05D000105 ORTHO05D000023 1.0e-14 84.7 72 69.4
SHI10580 Sapria himalayana HOM05D002969 ORTHO05D000023 1.8e-14 84.0 93 55.9
SHI37967 Sapria himalayana HOM05D000002 ORTHO05D000001 3.9e-14 82.8 86 59.3
SHI35704 Sapria himalayana HOM05D000023 ORTHO05D000014 1.1e-13 81.3 80 61.2
SHI21003 Sapria himalayana HOM05D000629 ORTHO05D016154 3.7e-12 76.3 53 73.6
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 8.1e-12 75.1 53 75.5
SHI25794 Sapria himalayana HOM05D000023 ORTHO05D016154 2.4e-11 73.6 51 74.5
SHI11645 Sapria himalayana HOM05D000023 ORTHO05D030572 4.0e-11 72.8 45 84.4
SHI28652 Sapria himalayana HOM05D000105 ORTHO05D000014 4.0e-11 72.8 84 56.0
SHI09635 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-10 70.9 133 40.6
SHI03836 Sapria himalayana HOM05D015319 ORTHO05D030572 4.5e-10 69.3 83 55.4
SHI08269 Sapria himalayana HOM05D015319 ORTHO05D016154 1.0e-09 68.2 52 71.2
SHI07350 Sapria himalayana HOM05D000023 ORTHO05D000014 1.7e-09 67.4 42 83.3
SHI28438 Sapria himalayana HOM05D000023 ORTHO05D000014 1.7e-09 67.4 42 83.3
SHI17526 Sapria himalayana HOM05D004343 ORTHO05D005695 2.2e-09 67.0 46 78.3
SHI27191 Sapria himalayana HOM05D000034 ORTHO05D000037 2.2e-09 67.0 57 64.9
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 4.9e-09 65.9 41 73.2
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 4.9e-09 65.9 40 75.0
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 6.4e-09 65.5 41 73.2
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 8.4e-09 65.1 41 70.7
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 8.4e-09 65.1 41 70.7
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 1.1e-08 64.7 41 73.2
SHI03272 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-08 64.3 85 54.1
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 1.9e-08 63.9 77 44.2
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 1.9e-08 63.9 41 73.2
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 1.9e-08 63.9 41 73.2
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 1.9e-08 63.9 41 70.7
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 1.9e-08 63.9 41 73.2
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 1.9e-08 63.9 41 70.7
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 2.5e-08 63.5 41 70.7
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 2.5e-08 63.5 41 70.7
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 2.5e-08 63.5 41 68.3
SHI06546 Sapria himalayana HOM05D015319 ORTHO05D030572 2.5e-08 63.5 44 77.3
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 3.2e-08 63.2 38 76.3
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 3.2e-08 63.2 41 70.7
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 3.2e-08 63.2 41 70.7
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 3.2e-08 63.2 40 72.5
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 4.2e-08 62.8 39 71.8
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 4.2e-08 62.8 40 72.5
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 4.2e-08 62.8 38 73.7
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 4.2e-08 62.8 41 70.7
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 4.2e-08 62.8 41 68.3
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 4.2e-08 62.8 41 70.7
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 4.2e-08 62.8 41 68.3
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 4.2e-08 62.8 41 68.3
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 5.5e-08 62.4 41 70.7
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 5.5e-08 62.4 41 70.7
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 5.5e-08 62.4 36 77.8
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 5.5e-08 62.4 41 68.3
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 5.5e-08 62.4 41 68.3
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 5.5e-08 62.4 41 68.3
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 5.5e-08 62.4 36 77.8
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 5.5e-08 62.4 41 68.3
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 5.5e-08 62.4 41 68.3
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 5.5e-08 62.4 41 68.3
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 5.5e-08 62.4 41 68.3
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 5.5e-08 62.4 41 68.3
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 5.5e-08 62.4 41 68.3
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 5.5e-08 62.4 41 68.3
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 5.5e-08 62.4 41 68.3
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 5.5e-08 62.4 41 68.3
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 5.5e-08 62.4 41 68.3
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 5.5e-08 62.4 40 70.0
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 5.5e-08 62.4 41 68.3
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 5.5e-08 62.4 41 68.3
SHI17078 Sapria himalayana HOM05D016227 ORTHO05D016154 5.5e-08 62.4 36 91.7
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 5.5e-08 62.4 38 73.7
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 7.1e-08 62.0 41 73.2
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 7.1e-08 62.0 40 72.5
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 7.1e-08 62.0 41 68.3
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 7.1e-08 62.0 41 68.3
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 7.1e-08 62.0 41 68.3
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 7.1e-08 62.0 41 70.7
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 7.1e-08 62.0 41 68.3
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 9.3e-08 61.6 38 71.1
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 9.3e-08 61.6 38 71.1
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 9.3e-08 61.6 41 70.7
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 9.3e-08 61.6 38 73.7
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 9.3e-08 61.6 38 71.1
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 9.3e-08 61.6 40 72.5
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 9.3e-08 61.6 41 68.3
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 9.3e-08 61.6 41 68.3
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 9.3e-08 61.6 38 71.1
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 1.2e-07 61.2 36 77.8
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 1.2e-07 61.2 39 69.2
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 1.2e-07 61.2 41 65.9
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 1.2e-07 61.2 41 65.9
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 1.2e-07 61.2 41 68.3
SHI00064 Sapria himalayana HOM05D001203 ORTHO05D001059 1.2e-07 61.2 37 81.1
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 1.6e-07 60.8 42 73.8
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 1.6e-07 60.8 54 59.3
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 1.6e-07 60.8 38 71.1
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 1.6e-07 60.8 41 65.9
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 1.6e-07 60.8 41 65.9
SHI00602 Sapria himalayana HOM05D015319 ORTHO05D030572 1.6e-07 60.8 38 86.8
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.6e-07 60.8 39 71.8
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 2.1e-07 60.5 41 65.9
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 2.1e-07 60.5 38 71.1
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 2.1e-07 60.5 38 71.1
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 2.7e-07 60.1 39 66.7
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 2.7e-07 60.1 38 68.4
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 2.7e-07 60.1 39 66.7
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 2.7e-07 60.1 38 68.4
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 2.7e-07 60.1 41 65.9
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 2.7e-07 60.1 38 68.4
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 3.5e-07 59.7 41 65.9
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 3.5e-07 59.7 38 68.4
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 3.5e-07 59.7 37 70.3
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 3.5e-07 59.7 41 65.9
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 3.5e-07 59.7 41 65.9
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 3.5e-07 59.7 39 69.2
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 3.5e-07 59.7 39 69.2
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 3.5e-07 59.7 38 71.1
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 3.5e-07 59.7 38 71.1
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 3.5e-07 59.7 38 71.1
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 3.5e-07 59.7 39 69.2
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 4.6e-07 59.3 41 65.9
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 4.6e-07 59.3 36 72.2
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 4.6e-07 59.3 36 72.2
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 6.0e-07 58.9 38 68.4
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 6.0e-07 58.9 41 65.9
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 7.9e-07 58.5 39 66.7
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 7.9e-07 58.5 39 64.1
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 7.9e-07 58.5 38 71.1
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 7.9e-07 58.5 38 68.4
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 7.9e-07 58.5 36 72.2
SHI38291 Sapria himalayana HOM05D000023 ORTHO05D000014 7.9e-07 58.5 86 46.5
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 7.9e-07 58.5 38 71.1
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 7.9e-07 58.5 38 71.1
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 7.9e-07 58.5 38 71.1
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 7.9e-07 58.5 43 62.8
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 1.0e-06 58.2 39 66.7
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 1.3e-06 57.8 32 81.2
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.8e-06 57.4 37 70.3
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 1.8e-06 57.4 41 63.4
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 2.3e-06 57.0 31 80.6
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 3.0e-06 56.6 36 66.7
SHI05697 Sapria himalayana HOM05D000392 ORTHO05D001257 5.1e-06 55.8 86 43.0
SHI23594 Sapria himalayana HOM05D000052 ORTHO05D018851 6.7e-06 55.5 41 75.6
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 8.7e-06 55.1 32 71.9
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 8.7e-06 55.1 32 71.9
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 8.7e-06 55.1 39 59.0
SHI20249 Sapria himalayana HOM05D000002 ORTHO05D000001 8.7e-06 55.1 34 82.4


User provided reference genes

Program Settings