Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 0.0e+00 1341.3 669 100.0
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 5.1e-213 745.0 621 60.5
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 1.1e-204 717.2 757 52.2
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 2.0e-201 706.4 729 53.2
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 1.0e-200 704.1 656 56.2
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 8.5e-200 701.0 621 59.1
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 3.2e-199 699.1 627 58.7
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 5.5e-199 698.4 620 58.2
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 1.4e-194 683.7 619 57.5
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 5.9e-193 678.3 619 56.9
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.3e-192 677.2 620 56.6
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 3.8e-192 675.6 633 55.8
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 1.1e-191 674.1 633 55.1
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 1.5e-191 673.7 623 56.7
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.9e-191 673.3 632 56.0
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 4.2e-191 672.2 620 56.6
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 5.5e-191 671.8 632 55.7
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 4.7e-190 668.7 626 56.2
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 6.1e-190 668.3 620 55.6
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 1.0e-189 667.5 623 56.0
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 2.3e-189 666.4 724 51.4
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 2.3e-189 666.4 618 56.1
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 2.3e-189 666.4 625 55.5
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 6.8e-189 664.8 619 56.4
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 6.8e-189 664.8 618 55.8
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 1.2e-188 664.1 619 56.2
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 1.2e-188 664.1 622 55.8
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 5.7e-188 661.8 631 55.5
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 9.8e-188 661.0 620 56.5
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 9.8e-188 661.0 620 56.5
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.7e-187 660.2 620 56.5
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.2e-187 659.8 620 56.5
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 2.8e-187 659.4 621 55.6
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 6.3e-187 658.3 620 54.7
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 8.3e-187 657.9 620 55.3
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 8.3e-187 657.9 627 55.2
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.2e-185 654.1 730 50.1
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 3.5e-185 652.5 618 55.5
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 4.5e-185 652.1 627 55.2
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 4.5e-185 652.1 622 53.5
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 5.9e-185 651.7 622 53.5
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 5.9e-185 651.7 619 54.6
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 7.7e-185 651.4 620 54.2
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 1.0e-184 651.0 624 55.6
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 1.3e-184 650.6 619 54.6
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 2.2e-184 649.8 730 50.0
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 2.9e-184 649.4 618 55.0
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 6.5e-184 648.3 620 55.8
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 1.5e-183 647.1 627 54.7
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 1.9e-183 646.7 727 48.7
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 2.5e-183 646.4 747 49.0
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 4.2e-183 645.6 723 49.5
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 7.2e-183 644.8 628 54.1
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 9.5e-183 644.4 723 50.1
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 4.7e-182 642.1 622 53.2
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 5.2e-181 638.6 625 53.1
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 1.3e-179 634.0 620 52.7
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 2.2e-179 633.3 618 53.7
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 8.3e-179 631.3 621 53.8
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 1.1e-178 630.9 682 50.1
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 1.4e-178 630.6 628 53.0
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 9.2e-178 627.9 623 52.5
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.2e-177 627.5 624 52.1
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 3.5e-177 625.9 621 53.5
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 1.0e-176 624.4 617 54.5
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 5.0e-176 622.1 616 53.7
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 2.1e-174 616.7 618 53.6
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 1.8e-173 613.6 620 52.6
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 4.0e-173 612.5 625 52.2
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 1.3e-171 607.4 615 51.5
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 4.9e-171 605.5 588 54.8
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 8.3e-171 604.7 567 56.1
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 3.5e-169 599.4 728 47.1
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.3e-168 596.7 624 50.2
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 1.6e-166 590.5 634 51.1
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 4.9e-163 578.9 625 52.3
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.2e-161 574.3 622 50.8
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 6.6e-160 568.5 624 49.8
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 1.1e-159 567.8 618 49.2
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 1.6e-158 563.9 621 51.4
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 3.6e-158 562.8 711 46.6
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 7.1e-154 548.5 730 45.1
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 9.2e-154 548.1 629 47.1
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 1.3e-152 544.3 597 50.1
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 6.8e-149 531.9 619 47.0
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 8.9e-149 531.6 610 48.7
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 2.1e-145 520.4 505 53.7
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 3.0e-144 516.5 756 43.0
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 1.9e-143 513.8 501 53.3
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 3.3e-143 513.1 600 47.3
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 2.6e-140 503.4 454 57.7
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 1.4e-138 497.7 521 53.4
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 2.8e-134 483.4 643 45.1
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 5.8e-132 475.7 414 58.7
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 9.6e-127 458.4 719 40.6
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 6.9e-125 452.2 389 58.9
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 3.2e-122 443.4 385 58.7
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 4.8e-118 429.5 410 54.1
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 3.4e-116 423.3 657 40.5
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 1.0e-115 421.8 382 56.0
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 6.7e-112 409.1 446 48.0
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 6.5e-107 392.5 534 43.1
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.2e-86 324.3 487 40.0
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.1e-85 322.0 288 55.6
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 7.5e-79 299.3 728 30.8
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 6.3e-78 296.2 505 37.6
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 5.9e-76 289.7 437 40.3
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.5e-74 285.0 224 60.3
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.5e-68 263.8 507 35.5
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 2.4e-61 241.1 490 36.5
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 2.3e-59 234.6 228 56.1
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 2.0e-55 221.5 278 48.2
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.1e-48 199.1 126 68.3
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 1.7e-46 191.8 372 36.6
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 1.7e-46 191.8 312 39.1
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 8.3e-46 189.5 188 51.6
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 8.3e-46 189.5 264 43.2
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 1.4e-45 188.7 244 45.5
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.0e-40 170.6 126 62.7
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.5e-39 168.7 285 33.7
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.1e-36 158.3 126 60.3
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.9e-30 137.9 193 44.0
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.1e-25 121.7 112 52.7
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.2e-23 115.9 107 57.9
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.0e-23 115.2 169 42.0
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 8.4e-22 109.8 131 44.3
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 1.6e-17 95.5 106 45.3
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 2.4e-16 91.7 85 52.9
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 7.6e-15 86.7 239 30.1
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 1.9e-13 82.0 86 50.0
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 6.2e-09 67.0 75 46.7
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 8.1e-09 66.6 44 63.6
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 3.1e-08 64.7 44 63.6
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 3.4e-07 61.2 58 51.7


User provided reference genes

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