Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 3.1e-204 714.9 363 100.0
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 2.2e-117 426.4 340 65.0
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 3.7e-117 425.6 340 65.6
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 1.4e-116 423.7 340 64.4
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.1e-116 422.2 340 64.4
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 5.4e-116 421.8 340 64.4
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 9.2e-116 421.0 340 64.7
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 9.2e-116 421.0 340 63.5
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.2e-115 420.6 340 64.7
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 1.2e-115 420.6 340 63.8
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 1.2e-115 420.6 340 63.8
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.2e-115 420.6 340 63.8
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 1.6e-115 420.2 340 64.4
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 2.1e-115 419.9 340 63.5
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 4.6e-115 418.7 340 64.7
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 6.0e-115 418.3 340 64.4
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 6.0e-115 418.3 340 64.1
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 7.8e-115 417.9 340 63.8
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 1.7e-114 416.8 340 63.2
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 1.7e-114 416.8 340 64.1
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 3.0e-114 416.0 340 62.9
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 3.0e-114 416.0 340 62.9
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 3.0e-114 416.0 340 63.2
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 3.0e-114 416.0 340 63.5
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 5.1e-114 415.2 340 63.2
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 6.6e-114 414.8 340 62.9
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 6.6e-114 414.8 340 63.2
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 8.6e-114 414.5 340 63.8
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 1.5e-113 413.7 340 63.2
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 3.3e-113 412.5 340 62.9
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 5.6e-113 411.8 340 62.6
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 5.6e-113 411.8 340 62.6
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 5.6e-113 411.8 340 63.5
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 5.6e-113 411.8 340 63.2
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 7.3e-113 411.4 345 62.3
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 7.3e-113 411.4 340 62.9
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 9.5e-113 411.0 340 62.6
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 2.1e-112 409.8 340 62.6
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.8e-112 409.5 340 62.6
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 2.8e-112 409.5 340 62.9
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 2.8e-112 409.5 341 61.9
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 4.7e-112 408.7 340 62.9
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 4.7e-112 408.7 340 62.4
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 6.2e-112 408.3 340 62.9
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 6.2e-112 408.3 336 63.1
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 8.1e-112 407.9 340 63.2
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 1.1e-111 407.5 340 62.4
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 1.4e-111 407.1 340 62.1
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 1.4e-111 407.1 339 62.8
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 1.4e-111 407.1 340 62.1
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.8e-111 406.8 341 62.2
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 2.4e-111 406.4 340 62.1
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 3.1e-111 406.0 341 62.5
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 3.1e-111 406.0 340 62.1
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 3.1e-111 406.0 340 62.1
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 4.0e-111 405.6 340 61.8
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 4.0e-111 405.6 356 60.4
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 4.0e-111 405.6 345 61.4
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 4.0e-111 405.6 340 62.6
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 5.2e-111 405.2 340 62.4
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 5.2e-111 405.2 340 61.8
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 5.2e-111 405.2 340 61.5
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 8.9e-111 404.4 340 60.9
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 8.9e-111 404.4 340 61.8
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 1.2e-110 404.1 341 62.5
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 1.2e-110 404.1 340 60.9
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 2.0e-110 403.3 340 61.8
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 2.6e-110 402.9 340 62.1
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 3.4e-110 402.5 341 61.6
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 4.4e-110 402.1 341 62.2
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 4.4e-110 402.1 341 61.9
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 4.4e-110 402.1 340 62.4
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 4.4e-110 402.1 340 62.1
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 5.8e-110 401.7 339 61.9
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 7.6e-110 401.4 340 60.9
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 1.3e-109 400.6 341 61.9
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 1.3e-109 400.6 341 61.9
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 1.7e-109 400.2 341 61.6
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 2.9e-109 399.4 340 61.5
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 3.8e-109 399.1 341 61.6
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 3.8e-109 399.1 341 61.6
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 3.8e-109 399.1 340 61.5
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 3.8e-109 399.1 340 60.6
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 4.9e-109 398.7 339 60.2
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 8.4e-109 397.9 340 60.6
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 1.1e-108 397.5 341 61.3
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 1.1e-108 397.5 339 60.8
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.4e-108 397.1 340 61.2
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 1.4e-108 397.1 340 61.5
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 1.4e-108 397.1 340 60.0
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 1.9e-108 396.7 341 61.0
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 4.1e-108 395.6 340 59.4
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 9.2e-108 394.4 340 60.6
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 2.1e-107 393.3 341 61.3
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 2.7e-107 392.9 340 59.7
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 3.5e-107 392.5 338 59.8
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 6.0e-107 391.7 341 61.0
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 6.0e-107 391.7 340 60.3
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 7.8e-107 391.3 339 60.5
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.7e-106 390.2 342 59.4
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 3.0e-106 389.4 340 58.5
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 8.7e-106 387.9 342 60.2
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.5e-105 387.1 341 58.9
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 3.3e-105 386.0 340 59.4
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 7.3e-105 384.8 342 58.8
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 1.6e-104 383.6 339 59.6
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 2.1e-104 383.3 342 58.5
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 2.1e-104 383.3 340 59.7
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.4e-103 380.6 340 60.3
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 3.1e-103 379.4 355 57.2
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 3.1e-103 379.4 360 56.7
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 5.8e-102 375.2 346 57.2
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 8.4e-101 371.3 375 54.9
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 1.6e-99 367.1 365 57.8
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 3.5e-99 365.9 288 65.3
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 7.8e-99 364.8 332 58.7
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 2.3e-98 363.2 286 65.4
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 1.6e-96 357.1 339 54.0
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 6.2e-96 355.1 299 62.9
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 5.3e-95 352.1 332 56.3
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 3.8e-93 345.9 327 56.3
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 6.4e-93 345.1 340 55.6
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 2.8e-88 329.7 340 53.5
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 3.7e-88 329.3 340 52.9
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 6.4e-85 318.5 351 52.4
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 6.4e-85 318.5 339 51.6
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 4.6e-83 312.4 337 50.7
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 4.8e-80 302.4 328 48.5
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 9.0e-79 298.1 219 68.5
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 1.0e-77 294.7 248 61.3
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 1.3e-77 294.3 248 60.9
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.7e-75 286.6 340 49.1
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 1.0e-74 284.6 202 70.3
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 1.5e-73 280.8 519 38.2
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 7.9e-67 258.5 240 58.8
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.3e-64 251.1 243 56.4
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 2.8e-64 250.0 343 43.1
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 4.1e-63 246.1 285 46.3
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.4e-55 221.1 154 72.1
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 6.5e-45 185.7 340 35.6
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 6.7e-42 175.6 153 58.2
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 6.7e-42 175.6 236 38.1
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 1.4e-39 167.9 108 72.2
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 4.1e-31 139.8 197 43.1
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.5e-30 136.3 84 77.4
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 8.0e-27 125.6 141 49.6
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 3.3e-20 103.6 123 48.0
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 6.1e-19 99.4 148 41.2
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 1.2e-17 95.1 63 71.4
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 1.5e-17 94.7 82 59.8
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.2e-16 90.9 87 55.2
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 2.9e-16 90.5 66 65.2
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 3.2e-15 87.0 249 26.5
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 4.6e-14 83.2 230 29.1
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 6.0e-14 82.8 86 51.2
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 7.5e-09 65.9 160 32.5
SHI46327 Sapria himalayana HOM05D000002 ORTHO05D000001 2.1e-06 57.8 35 82.9
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 2.7e-06 57.4 72 51.4


User provided reference genes

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