Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 1.4e-96 356.3 177 100.0
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 1.2e-68 263.5 175 72.0
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 2.7e-68 262.3 174 71.8
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 6.0e-68 261.2 175 72.0
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 6.0e-68 261.2 174 71.8
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 7.8e-68 260.8 174 71.3
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 1.3e-67 260.0 174 71.8
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 1.3e-67 260.0 174 71.3
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 1.3e-67 260.0 174 71.3
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 1.3e-67 260.0 174 71.3
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 3.0e-67 258.8 174 70.7
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 6.6e-67 257.7 174 71.3
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 8.6e-67 257.3 174 73.6
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 2.5e-66 255.8 174 70.1
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 2.5e-66 255.8 176 71.0
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 2.5e-66 255.8 174 70.1
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 3.3e-66 255.4 174 71.3
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 3.3e-66 255.4 174 70.1
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 9.5e-66 253.8 175 72.0
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 9.5e-66 253.8 175 74.3
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 9.5e-66 253.8 174 73.0
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 1.2e-65 253.4 174 73.6
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 1.2e-65 253.4 174 72.4
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 1.2e-65 253.4 178 70.8
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.6e-65 253.1 174 72.4
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 1.6e-65 253.1 175 73.7
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 2.1e-65 252.7 174 73.6
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 2.8e-65 252.3 174 71.3
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 4.7e-65 251.5 174 70.7
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 4.7e-65 251.5 174 71.3
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 4.7e-65 251.5 175 70.3
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 6.2e-65 251.1 174 71.3
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 6.2e-65 251.1 175 70.3
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 8.0e-65 250.8 175 70.9
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.1e-64 250.4 175 69.1
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.4e-64 250.0 174 69.0
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 1.8e-64 249.6 174 70.7
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 2.3e-64 249.2 175 69.7
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 2.3e-64 249.2 178 69.1
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 3.1e-64 248.8 175 70.3
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 4.0e-64 248.4 175 70.3
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 4.0e-64 248.4 174 71.8
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 5.2e-64 248.1 174 70.7
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 5.2e-64 248.1 175 70.9
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 6.8e-64 247.7 174 72.4
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 6.8e-64 247.7 174 71.8
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 6.8e-64 247.7 172 69.8
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 1.2e-63 246.9 178 68.5
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.0e-63 246.1 174 71.3
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.0e-63 246.1 174 71.3
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 2.0e-63 246.1 174 66.7
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 2.6e-63 245.7 174 66.1
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 3.4e-63 245.4 175 68.6
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.4e-63 245.4 175 68.6
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 4.4e-63 245.0 174 64.9
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.4e-63 245.0 175 68.6
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 5.8e-63 244.6 174 70.1
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 5.8e-63 244.6 174 69.5
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 5.8e-63 244.6 179 68.7
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 5.8e-63 244.6 174 69.5
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 5.8e-63 244.6 175 68.6
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.8e-63 244.6 175 68.6
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 5.8e-63 244.6 176 68.2
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 5.8e-63 244.6 174 69.0
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 7.5e-63 244.2 174 69.5
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 7.5e-63 244.2 175 68.0
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.3e-62 243.4 171 71.9
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 1.3e-62 243.4 175 68.6
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 1.7e-62 243.0 174 69.5
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 1.7e-62 243.0 174 68.4
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 2.2e-62 242.7 167 72.5
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 2.9e-62 242.3 167 71.9
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 3.7e-62 241.9 176 65.9
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 3.7e-62 241.9 175 67.4
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 6.4e-62 241.1 174 68.4
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 6.4e-62 241.1 174 65.5
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 8.3e-62 240.7 167 71.3
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 1.1e-61 240.4 175 68.0
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 1.9e-61 239.6 176 65.3
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 5.4e-61 238.0 179 67.6
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 5.4e-61 238.0 175 65.7
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 5.4e-61 238.0 173 70.5
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 7.1e-61 237.7 170 67.6
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 9.2e-61 237.3 176 68.8
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 1.2e-60 236.9 167 67.1
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 1.2e-60 236.9 168 72.0
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 1.6e-60 236.5 169 69.8
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 2.1e-60 236.1 174 66.1
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 3.5e-60 235.3 174 66.7
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 4.6e-60 235.0 169 69.2
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 4.6e-60 235.0 169 69.2
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 4.6e-60 235.0 169 69.2
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 4.6e-60 235.0 159 72.3
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 6.0e-60 234.6 170 67.1
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 1.0e-59 233.8 169 68.6
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 1.0e-59 233.8 170 67.1
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 1.3e-59 233.4 164 68.3
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 3.0e-59 232.3 166 69.3
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.0e-59 232.3 171 66.1
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 3.9e-59 231.9 167 69.5
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 5.1e-59 231.5 169 68.6
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 6.6e-59 231.1 174 65.5
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 6.6e-59 231.1 175 65.7
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 1.1e-58 230.3 176 65.3
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 1.1e-58 230.3 170 65.3
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 1.1e-58 230.3 176 62.5
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 1.5e-58 229.9 166 67.5
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 1.5e-58 229.9 178 64.6
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 1.9e-58 229.6 162 70.4
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 2.5e-58 229.2 168 67.3
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 2.5e-58 229.2 175 65.1
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.3e-58 228.8 167 67.1
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 4.3e-58 228.4 167 68.3
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 5.6e-58 228.0 162 69.8
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 7.3e-58 227.6 226 56.6
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 7.3e-58 227.6 167 66.5
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 9.5e-58 227.3 154 70.8
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 9.5e-58 227.3 168 67.3
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 1.6e-57 226.5 168 63.7
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 3.6e-57 225.3 176 61.9
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 3.6e-57 225.3 166 65.1
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 1.8e-56 223.0 175 62.3
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 1.8e-56 223.0 158 69.0
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 5.2e-56 221.5 174 60.9
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 8.9e-56 220.7 166 65.1
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 1.2e-55 220.3 175 61.1
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 1.5e-55 219.9 174 59.2
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 1.7e-54 216.5 169 63.3
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.7e-54 216.5 168 63.7
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 2.2e-54 216.1 156 67.3
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 1.4e-53 213.4 170 61.2
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 1.9e-53 213.0 157 67.5
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 4.6e-52 208.4 166 62.0
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 1.1e-48 197.2 167 62.3
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 1.8e-48 196.4 168 62.5
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 9.3e-45 184.1 146 66.4
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 7.8e-44 181.0 121 68.6
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 7.8e-44 181.0 121 68.6
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.0e-43 180.6 121 71.9
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 2.3e-43 179.5 121 72.7
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 2.1e-41 172.9 122 68.0
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 1.8e-40 169.9 189 47.1
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 4.0e-40 168.7 114 70.2
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 4.0e-40 168.7 116 72.4
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 2.7e-36 156.0 171 46.2
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 3.6e-33 145.6 155 51.0
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.2e-31 140.6 101 68.3
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.0e-31 139.8 99 70.7
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.9e-30 135.2 99 68.7
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 3.7e-25 119.0 95 62.1
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 2.2e-22 109.8 58 82.8
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 4.6e-20 102.1 108 50.0
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 3.0e-19 99.4 116 44.0
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 8.7e-19 97.8 173 33.5
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 1.5e-18 97.1 151 35.1
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.7e-17 92.4 85 58.8
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 4.8e-17 92.0 152 35.5
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 5.8e-15 85.1 95 44.2
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 1.8e-11 73.6 54 66.7
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 7.4e-10 68.2 49 67.3
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 1.6e-09 67.0 52 65.4
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 8.2e-09 64.7 50 66.0


User provided reference genes

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