Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18208 Sapria himalayana HOM05D000108 ORTHO05D006029 1.4e-192 676.0 329 100.0
Aqoxy2G02776 Aquilegia oxysepala HOM05D000108 ORTHO05D006029 3.0e-41 173.3 158 55.7
CiPaw.07G014600 Carya illinoinensis HOM05D000108 ORTHO05D006029 3.0e-41 173.3 142 61.3
GSVIVG01000008001 Vitis vinifera HOM05D000108 ORTHO05D006029 8.8e-41 171.8 142 62.7
Cfa006545 Carpinus fangiana HOM05D000108 ORTHO05D006029 1.2e-40 171.4 142 59.2
Haze_25394 Corylus avellana HOM05D000108 ORTHO05D006029 1.5e-40 171.0 142 59.9
TWI56G0698 Tripterygium wilfordii HOM05D000108 ORTHO05D006029 2.6e-40 170.2 142 62.0
Potri.005G038900 Populus trichocarpa HOM05D000108 ORTHO05D006029 3.4e-40 169.9 142 62.0
Aa31LG10G17350 Aethionema arabicum HOM05D000108 ORTHO05D006029 7.5e-40 168.7 142 59.9
Gohir.A11G263132 Gossypium hirsutum HOM05D000108 ORTHO05D006029 2.2e-39 167.2 142 61.3
Manes.08G123200 Manihot esculenta HOM05D000108 ORTHO05D006029 2.2e-39 167.2 142 60.6
Sabra05G0037700 Salix brachista HOM05D000108 ORTHO05D006029 2.8e-39 166.8 142 59.9
Lj9A682T48 Lonicera japonica HOM05D000108 ORTHO05D006029 3.7e-39 166.4 142 59.9
Actinidia19806 Actinidia chinensis HOM05D000273 ORTHO05D006029 4.8e-39 166.0 143 58.7
Cpa.g.sc48.12 Carica papaya HOM05D000108 ORTHO05D006029 6.3e-39 165.6 142 59.9
Thecc.05G308300 Theobroma cacao HOM05D000108 ORTHO05D006029 6.3e-39 165.6 142 60.6
Duzib128G2000 Durio zibethinus HOM05D000108 ORTHO05D006029 1.8e-38 164.1 142 60.6
Gohir.D11G273200 Gossypium hirsutum HOM05D000108 ORTHO05D006029 1.8e-38 164.1 142 60.6
Gorai.007G294600 Gossypium raimondii HOM05D000108 ORTHO05D006029 1.8e-38 164.1 142 60.6
Lj1g0019134 Lotus japonicus HOM05D000108 ORTHO05D006029 5.4e-38 162.5 142 60.6
CSS0038768 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D006029 1.6e-37 161.0 142 57.7
CSS0044833 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D006029 1.6e-37 161.0 142 57.7
COL.COLO4_13517 Corchorus olitorius HOM05D000273 ORTHO05D006029 1.6e-37 161.0 142 59.2
QL03p004313 Quercus lobata HOM05D000108 ORTHO05D006029 2.0e-37 160.6 142 58.5
Prupe.6G330200 Prunus persica HOM05D000108 ORTHO05D006029 4.5e-37 159.5 142 57.0
PSO170G2040 Papaver somniferum HOM05D000108 ORTHO05D006029 1.0e-36 158.3 144 54.9
PSO407G0355 Papaver somniferum HOM05D000108 ORTHO05D006029 1.3e-36 157.9 144 55.6
arahy.Tifrunner.gnm1.ann1.G0F2H7 Arachis hypogaea HOM05D000108 ORTHO05D006029 1.7e-36 157.5 143 59.4
arahy.Tifrunner.gnm1.ann1.JIGP3F Arachis hypogaea HOM05D000108 ORTHO05D006029 1.7e-36 157.5 143 59.4
Lalb_Chr15g0077071 Lupinus albus HOM05D000108 ORTHO05D006029 1.7e-36 157.5 142 59.2
FvH4_6g05340 Fragaria vesca HOM05D000108 ORTHO05D006029 2.9e-36 156.8 142 56.3
FAN14G1533 Fragaria x ananassa HOM05D000108 ORTHO05D006029 2.9e-36 156.8 142 56.3
FAN14G3015 Fragaria x ananassa HOM05D000108 ORTHO05D006029 2.9e-36 156.8 142 56.3
MELO3C010147.2 Cucumis melo HOM05D000108 ORTHO05D006029 3.8e-36 156.4 142 56.3
PSO210G1121 Papaver somniferum HOM05D000108 ORTHO05D006029 3.8e-36 156.4 144 54.2
Sp1g24030 Schrenkiella parvula HOM05D000108 ORTHO05D006029 3.8e-36 156.4 143 56.6
Glyma.15G256400 Glycine max HOM05D000108 ORTHO05D006029 5.0e-36 156.0 143 55.9
RcHm_v2.0_Chr3g0454101 Rosa chinensis HOM05D000108 ORTHO05D006029 5.0e-36 156.0 142 55.6
COL.COLO4_16160 Corchorus olitorius HOM05D000108 ORTHO05D006029 6.6e-36 155.6 142 57.7
Rhsim05G0144600 Rhododendron simsii HOM05D000108 ORTHO05D006029 6.6e-36 155.6 142 57.0
THA.LOC104823031 Tarenaya hassleriana HOM05D000108 ORTHO05D006029 6.6e-36 155.6 142 55.6
Sed0006246 Sechium edule HOM05D000108 ORTHO05D006029 8.6e-36 155.2 142 56.3
Carub.0005s3009 Capsella rubella HOM05D000108 ORTHO05D006029 1.5e-35 154.5 142 55.6
FAN09G1914 Fragaria x ananassa HOM05D000273 ORTHO05D006029 1.5e-35 154.5 142 55.6
CsaV3_1G045180 Cucumis sativus L. HOM05D000108 ORTHO05D006029 1.9e-35 154.1 142 54.9
MBI05_g33287_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D006029 2.5e-35 153.7 142 53.5
Sc09g0003360 Simmondsia chinensis HOM05D006710 ORTHO05D006029 4.2e-35 152.9 142 53.5
TAR633G2196 Trochodendron aralioides HOM05D000108 ORTHO05D006029 4.2e-35 152.9 140 55.0
CANSAT25G0558 Cannabis sativa HOM05D000108 ORTHO05D006029 5.5e-35 152.5 142 53.5
FAN02G0002 Fragaria x ananassa HOM05D000108 ORTHO05D006029 5.5e-35 152.5 142 54.9
MD12G1223800 Malus domestica HOM05D000108 ORTHO05D006029 5.5e-35 152.5 142 56.3
Atru.chr11.1582 Acer truncatum HOM05D000108 ORTHO05D006029 9.5e-35 151.8 142 54.9
Eucgr.K01889 Eucalyptus grandis HOM05D000108 ORTHO05D006029 9.5e-35 151.8 142 56.3
Oeu015682.1 Olea europaea HOM05D000108 ORTHO05D006029 1.2e-34 151.4 142 54.9
FAN05G0788 Fragaria x ananassa HOM05D000108 ORTHO05D006029 1.6e-34 151.0 142 53.5
FAN05G0886 Fragaria x ananassa HOM05D000108 ORTHO05D006029 1.6e-34 151.0 142 53.5
Thhalv10005951m.g Eutrema salsugineum HOM05D000108 ORTHO05D006029 2.8e-34 150.2 144 54.9
Glyma.08G170500 Glycine max HOM05D000108 ORTHO05D006029 3.6e-34 149.8 143 54.5
PGR102G1168 Punica granatum HOM05D000108 ORTHO05D006029 4.7e-34 149.4 182 47.8
AT3G63480 Arabidopsis thaliana HOM05D000108 ORTHO05D006029 6.1e-34 149.1 143 54.5
Os08g0117000 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D006029 8.0e-34 148.7 142 52.8
Zm00001eb260930 Zea mays HOM05D000108 ORTHO05D006029 1.0e-33 148.3 142 55.6
CARHR291490 Cardamine hirsuta HOM05D000108 ORTHO05D006029 3.0e-33 146.7 142 54.2
ATR1155G012 Amborella trichopoda HOM05D000108 ORTHO05D006029 5.2e-33 146.0 156 48.7
AL5G46340 Arabidopsis lyrata HOM05D000108 ORTHO05D006029 8.9e-33 145.2 143 52.4
DCAR_003313 Daucus carota HOM05D000108 ORTHO05D006029 5.7e-32 142.5 142 50.7
Nn4g26164 Nelumbo nucifera HOM05D000108 ORTHO05D006029 7.5e-32 142.1 142 51.4
Hund07045 Selenicereus undatus HOM05D000108 ORTHO05D006029 1.3e-31 141.4 140 50.7
Migut.B01216 Erythranthe guttata HOM05D000108 ORTHO05D006029 2.2e-31 140.6 142 50.7
SalBow5G0045 Salvia bowleyana HOM05D000108 ORTHO05D006029 3.7e-31 139.8 181 43.6
Nitab4.5_0004940g0140 Nicotiana tabacum HOM05D000108 ORTHO05D006029 4.9e-31 139.4 142 52.8
Ah.06g190120 Amaranthus hybridus HOM05D000273 ORTHO05D006029 6.3e-31 139.0 142 49.3
ClCG03G010060 Citrullus lanatus HOM05D000108 ORTHO05D006029 8.3e-31 138.7 181 43.6
Sopen01g042210 Solanum pennellii HOM05D000108 ORTHO05D006029 8.3e-31 138.7 142 52.8
SalBow5G4695 Salvia bowleyana HOM05D000108 ORTHO05D006029 1.1e-30 138.3 165 46.1
CAN.G1134.20 Capsicum annuum HOM05D000108 ORTHO05D006029 1.8e-30 137.5 142 52.1
AUR62005109 Chenopodium quinoa HOM05D000108 ORTHO05D006029 2.4e-30 137.1 142 48.6
Solyc01g098670.3 Solanum lycopersicum HOM05D000108 ORTHO05D006029 9.2e-30 135.2 142 51.4
EL10Ac4g09307 Beta vulgaris HOM05D000108 ORTHO05D006029 1.2e-29 134.8 142 47.9
Nitab4.5_0007238g0020 Nicotiana tabacum HOM05D000108 ORTHO05D006029 2.0e-29 134.0 142 51.4
Cc02_g32690 Coffea canephora HOM05D000108 ORTHO05D006029 2.7e-29 133.7 142 50.0
MBI05_g40560_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D006029 2.7e-29 133.7 133 51.1
ECA246G1564 Erigeron canadensis HOM05D000108 ORTHO05D006029 5.6e-27 125.9 142 48.6
AUR62000867 Chenopodium quinoa HOM05D000108 ORTHO05D006029 2.8e-26 123.6 141 44.0
FAN14G5781 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.4e-25 121.3 143 44.8
Lsat_1_v5_gn_3_61380 Lactuca sativa HOM05D000108 ORTHO05D006029 5.2e-25 119.4 147 46.9
FvH4_6g02040 Fragaria vesca HOM05D000108 ORTHO05D006029 4.4e-24 116.3 119 52.1
Ciclev10000365m.g Citrus clementina HOM05D000273 ORTHO05D000198 2.4e-22 110.5 97 56.7
AagrBONN_evm.TU.Sc2ySwM_344.3357 Anthoceros agrestis HOM05D000108 ORTHO05D006029 4.1e-22 109.8 158 40.5
HanXRQChr04g0113271 Helianthus annuus HOM05D000108 ORTHO05D006029 7.0e-22 109.0 142 45.8
HanXRQChr17g0550581 Helianthus annuus HOM05D000108 ORTHO05D006029 3.5e-21 106.7 130 48.5
vmacro19645 Vaccinium macrocarpon HOM05D000108 ORTHO05D006029 3.5e-21 106.7 160 45.6
VMungo0540G1334 Vigna mungo HOM05D000108 ORTHO05D006029 4.6e-21 106.3 117 52.1
Peaxi162Scf00434g00333 Petunia axillaris HOM05D000108 ORTHO05D006029 5.0e-20 102.8 103 54.4
SMO117G0033 Selaginella moellendorffii HOM05D000108 ORTHO05D006029 3.4e-16 90.1 143 39.9
CBR_g55234 Chara braunii HOM05D000108 ORTHO05D006029 7.5e-16 89.0 162 36.4
FAN17G3027 Fragaria x ananassa HOM05D000108 ORTHO05D006029 1.1e-14 85.1 80 55.0
FAN14G2965 Fragaria x ananassa HOM05D000108 ORTHO05D006029 7.0e-14 82.4 122 41.0
EL10Ac9g22489 Beta vulgaris HOM05D000983 ORTHO05D001922 1.6e-13 81.3 73 50.7
Dinv40258 Davidia involucrata HOM05D000108 ORTHO05D006029 7.3e-11 72.4 54 66.7
Zm00001eb064560 Zea mays HOM05D000108 ORTHO05D006029 1.2e-10 71.6 105 42.9
FAN20G1751 Fragaria x ananassa HOM05D000108 ORTHO05D006029 1.1e-09 68.6 89 44.9
PSO170G4340 Papaver somniferum HOM05D000108 ORTHO05D006029 1.4e-09 68.2 142 35.9
Atru.chr2.489 Acer truncatum HOM05D001286 ORTHO05D006029 1.8e-09 67.8 54 59.3
Atru.chr2.488 Acer truncatum HOM05D001286 ORTHO05D000440 2.0e-08 64.3 70 48.6
FAN22G1531 Fragaria x ananassa HOM05D000108 ORTHO05D006029 2.9e-07 60.5 47 63.8
Eucgr.F03520 Eucalyptus grandis HOM05D000108 ORTHO05D001781 4.9e-07 59.7 136 33.1
SEGI_27266 Sequoiadendron giganteum HOM05D000108 ORTHO05D001781 4.9e-07 59.7 129 27.1
SEGI_40254 Sequoiadendron giganteum HOM05D000108 ORTHO05D001781 4.9e-07 59.7 129 27.1
Peaxi162Scf00225g00219 Petunia axillaris HOM05D000141 ORTHO05D004038 6.4e-07 59.3 139 31.7
CDE10G0696 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 8.3e-07 58.9 149 27.5
Nitab4.5_0000245g0040 Nicotiana tabacum HOM05D000141 ORTHO05D004038 1.1e-06 58.5 139 31.7
arahy.Tifrunner.gnm1.ann1.0L3W6A Arachis hypogaea HOM05D000108 ORTHO05D001781 1.4e-06 58.2 131 32.1
CBR_g8649 Chara braunii HOM05D000108 ORTHO05D001149 1.4e-06 58.2 138 34.1
Nitab4.5_0002840g0140 Nicotiana tabacum HOM05D000141 ORTHO05D004038 1.4e-06 58.2 139 30.9
TAR365G0839 Trochodendron aralioides HOM05D000141 ORTHO05D004038 1.4e-06 58.2 140 32.1
arahy.Tifrunner.gnm1.ann1.S7JP6V Arachis hypogaea HOM05D000108 ORTHO05D001781 1.9e-06 57.8 131 32.1
PSO675G5002 Papaver somniferum HOM05D000108 ORTHO05D001781 1.9e-06 57.8 184 28.3
Glyma.14G016800 Glycine max HOM05D000108 ORTHO05D001781 2.4e-06 57.4 162 28.4
Solyc01g098080.3 Solanum lycopersicum HOM05D000141 ORTHO05D004038 2.4e-06 57.4 139 31.7
Sopen01g041650 Solanum pennellii HOM05D000141 ORTHO05D004038 2.4e-06 57.4 139 31.7
TWI73G0460 Tripterygium wilfordii HOM05D000108 ORTHO05D001378 2.4e-06 57.4 167 29.9
MSTRG.10287 Avicennia marina HOM05D000108 ORTHO05D001149 3.2e-06 57.0 129 33.3
Manes.03G133900 Manihot esculenta HOM05D000108 ORTHO05D001781 3.2e-06 57.0 131 29.0
PGSC0003DMG400022459 Solanum tuberosum HOM05D000141 ORTHO05D004038 3.2e-06 57.0 139 32.4
Zm00001eb012720 Zea mays HOM05D000108 ORTHO05D001149 3.2e-06 57.0 144 31.2
Glyma.18G082000 Glycine max HOM05D000108 ORTHO05D001781 4.1e-06 56.6 135 30.4
PGR031G3002 Punica granatum HOM05D000108 ORTHO05D001781 5.4e-06 56.2 136 28.7
Rhsim06G0226000 Rhododendron simsii HOM05D000108 ORTHO05D001781 5.4e-06 56.2 131 29.8
THA.LOC104824725 Tarenaya hassleriana HOM05D000108 ORTHO05D001378 5.4e-06 56.2 129 31.0
GSVIVG01025610001 Vitis vinifera HOM05D000108 ORTHO05D001149 7.1e-06 55.8 142 31.0
Lj4g0009019 Lotus japonicus HOM05D000108 ORTHO05D001378 9.2e-06 55.5 121 32.2
Medtr1g067630 Medicago truncatula HOM05D000108 ORTHO05D001149 9.2e-06 55.5 137 30.7


User provided reference genes

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