Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 3.4e-77 291.6 145 100.0
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 5.1e-33 144.8 141 56.0
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 6.7e-33 144.4 142 57.0
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.5e-32 143.3 139 55.4
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 2.5e-32 142.5 139 56.1
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 3.3e-32 142.1 141 55.3
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 7.4e-32 141.0 139 56.1
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 7.4e-32 141.0 139 56.1
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 1.3e-31 140.2 141 56.0
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 4.8e-31 138.3 144 53.5
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 6.2e-31 137.9 142 52.8
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 6.2e-31 137.9 142 52.8
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 6.2e-31 137.9 137 56.2
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 1.4e-30 136.7 138 54.3
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 1.4e-30 136.7 131 56.5
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 2.4e-30 136.0 137 55.5
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 4.0e-30 135.2 139 54.7
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 5.3e-30 134.8 139 54.0
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 5.3e-30 134.8 139 54.0
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 5.3e-30 134.8 139 55.4
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 6.9e-30 134.4 139 54.7
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 6.9e-30 134.4 137 54.0
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 6.9e-30 134.4 139 54.7
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 9.0e-30 134.0 136 55.1
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 9.0e-30 134.0 139 53.2
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 9.0e-30 134.0 138 52.9
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 9.0e-30 134.0 142 54.2
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 1.2e-29 133.7 142 52.1
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 1.2e-29 133.7 137 54.7
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.5e-29 133.3 138 52.9
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 1.5e-29 133.3 139 53.2
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 2.0e-29 132.9 137 54.7
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 2.6e-29 132.5 138 52.2
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 2.6e-29 132.5 137 54.0
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 2.6e-29 132.5 139 51.8
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 3.4e-29 132.1 139 52.5
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 4.5e-29 131.7 142 50.7
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 4.5e-29 131.7 137 54.0
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 5.8e-29 131.3 140 52.9
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 5.8e-29 131.3 139 54.7
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 5.8e-29 131.3 139 53.2
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 5.8e-29 131.3 137 54.0
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 5.8e-29 131.3 149 53.7
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 5.8e-29 131.3 135 54.1
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 7.6e-29 131.0 142 50.7
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 7.6e-29 131.0 142 51.4
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.7e-28 129.8 142 52.1
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.7e-28 129.8 142 52.1
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.2e-28 129.4 142 50.7
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 2.9e-28 129.0 145 51.0
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 3.8e-28 128.6 139 53.2
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 4.9e-28 128.3 139 53.2
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 4.9e-28 128.3 142 50.0
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 4.9e-28 128.3 142 50.0
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 8.4e-28 127.5 138 51.4
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 8.4e-28 127.5 142 52.1
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 1.1e-27 127.1 139 52.5
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 1.1e-27 127.1 138 51.4
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 1.1e-27 127.1 139 52.5
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 1.1e-27 127.1 139 50.4
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.1e-27 127.1 138 51.4
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 1.1e-27 127.1 136 53.7
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 1.1e-27 127.1 142 52.8
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 1.4e-27 126.7 139 51.1
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.4e-27 126.7 139 51.8
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 1.4e-27 126.7 139 50.4
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 1.4e-27 126.7 144 52.1
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 1.9e-27 126.3 139 51.1
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 2.4e-27 125.9 139 51.8
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 2.4e-27 125.9 139 51.8
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 3.2e-27 125.6 142 50.0
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 3.2e-27 125.6 139 50.4
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 3.2e-27 125.6 134 52.2
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 3.2e-27 125.6 138 51.4
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 3.2e-27 125.6 138 51.4
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 4.2e-27 125.2 139 50.4
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 4.2e-27 125.2 139 51.1
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 5.5e-27 124.8 136 52.2
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 7.1e-27 124.4 142 50.7
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 9.3e-27 124.0 139 51.1
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 9.3e-27 124.0 138 51.4
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 1.2e-26 123.6 142 48.6
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.2e-26 123.6 142 51.4
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.2e-26 123.6 142 51.4
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 1.2e-26 123.6 138 50.7
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 1.2e-26 123.6 139 51.1
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.6e-26 123.2 139 50.4
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 1.6e-26 123.2 142 47.2
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 1.6e-26 123.2 139 50.4
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 1.6e-26 123.2 139 50.4
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.6e-26 123.2 142 50.7
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 2.1e-26 122.9 139 50.4
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 2.1e-26 122.9 142 50.7
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 2.1e-26 122.9 116 59.5
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 2.7e-26 122.5 139 49.6
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 3.5e-26 122.1 133 52.6
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.5e-26 122.1 142 50.7
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 3.5e-26 122.1 137 48.9
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.6e-26 121.7 136 51.5
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.6e-26 121.7 139 48.9
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 4.6e-26 121.7 142 48.6
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 4.6e-26 121.7 137 49.6
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.0e-26 121.3 142 50.0
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.0e-26 121.3 142 50.0
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 6.0e-26 121.3 161 47.2
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 6.0e-26 121.3 161 47.2
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 7.9e-26 120.9 144 50.0
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 7.9e-26 120.9 138 48.6
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 7.9e-26 120.9 134 52.2
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 1.0e-25 120.6 137 48.9
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 1.0e-25 120.6 136 50.7
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 1.3e-25 120.2 139 49.6
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 1.8e-25 119.8 139 49.6
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 2.3e-25 119.4 134 50.0
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 2.3e-25 119.4 134 49.3
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 3.0e-25 119.0 139 48.9
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 3.0e-25 119.0 138 49.3
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 3.9e-25 118.6 139 49.6
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 6.7e-25 117.9 135 50.4
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 6.7e-25 117.9 138 50.0
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 8.7e-25 117.5 142 47.2
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 1.1e-24 117.1 131 49.6
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 1.5e-24 116.7 139 49.6
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 2.5e-24 115.9 139 48.9
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 4.3e-24 115.2 139 47.5
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 7.4e-24 114.4 138 48.6
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 1.3e-23 113.6 139 48.2
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 1.6e-23 113.2 139 48.2
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 2.8e-23 112.5 141 47.5
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 2.8e-23 112.5 137 47.4
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 1.4e-22 110.2 142 45.8
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 1.8e-22 109.8 142 45.8
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.8e-22 109.8 138 50.7
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 2.4e-22 109.4 138 46.4
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 5.3e-22 108.2 145 49.7
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 1.0e-20 104.0 86 61.6
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 1.7e-20 103.2 141 43.3
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 4.9e-20 101.7 83 60.2
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 8.4e-20 100.9 136 44.9
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 1.4e-19 100.1 83 60.2
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 1.9e-19 99.8 141 39.0
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 1.9e-19 99.8 141 39.0
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 4.2e-19 98.6 104 53.8
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.1e-18 96.3 83 59.0
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 6.7e-17 91.3 138 39.1
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 3.7e-15 85.5 125 44.8
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 4.8e-15 85.1 142 39.4
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 1.3e-12 77.0 126 38.9
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 2.5e-11 72.8 128 35.9
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 1.0e-09 67.4 76 47.4
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 5.1e-09 65.1 136 35.3


User provided reference genes

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