Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18113 Sapria himalayana HOM05D003060 ORTHO05D001716 0.0e+00 1241.1 649 100.0
Thecc.08G198500 Theobroma cacao HOM05D003060 ORTHO05D001716 5.7e-84 316.2 509 43.0
Manes.09G169200 Manihot esculenta HOM05D003060 ORTHO05D001716 8.3e-83 312.4 514 43.6
Duzib211G0658 Durio zibethinus HOM05D003060 ORTHO05D001716 4.1e-82 310.1 765 34.2
Gorai.009G287300 Gossypium raimondii HOM05D003060 ORTHO05D001716 1.6e-81 308.1 768 34.1
Duzib116G0105 Durio zibethinus HOM05D003060 ORTHO05D001716 5.0e-80 303.1 532 41.9
Glyma.20G235700 Glycine max HOM05D003060 ORTHO05D001716 1.2e-78 298.5 500 41.4
Gohir.D05G274200 Gossypium hirsutum HOM05D003060 ORTHO05D001716 1.2e-78 298.5 770 33.6
Haze_04161 Corylus avellana HOM05D003060 ORTHO05D001716 4.7e-78 296.6 474 43.5
Duzib177G0733 Durio zibethinus HOM05D003060 ORTHO05D001716 4.7e-78 296.6 772 34.1
Cfa006614 Carpinus fangiana HOM05D003060 ORTHO05D001716 2.6e-76 290.8 477 43.0
Glyma.10G152700 Glycine max HOM05D003060 ORTHO05D001716 4.4e-76 290.0 557 39.1
QL03p012691 Quercus lobata HOM05D003060 ORTHO05D001716 7.5e-76 289.3 584 38.4
COL.COLO4_05531 Corchorus olitorius HOM05D003060 ORTHO05D001716 2.4e-74 284.3 769 33.0
Atru.chr2.14 Acer truncatum HOM05D003060 ORTHO05D001716 4.1e-74 283.5 475 42.1
Potri.013G018700 Populus trichocarpa HOM05D003060 ORTHO05D001716 5.4e-74 283.1 495 42.2
Ciclev10000070m.g Citrus clementina HOM05D003060 ORTHO05D001716 4.5e-73 280.0 470 42.8
arahy.Tifrunner.gnm1.ann1.U2HTAJ Arachis hypogaea HOM05D003060 ORTHO05D001716 5.9e-73 279.6 540 40.4
arahy.Tifrunner.gnm1.ann1.LGT5H6 Arachis hypogaea HOM05D003060 ORTHO05D001716 1.7e-72 278.1 541 40.7
Glyma.19G234300 Glycine max HOM05D003060 ORTHO05D001716 8.6e-72 275.8 504 39.5
Sabra05G0032100 Salix brachista HOM05D003060 ORTHO05D001716 8.6e-72 275.8 650 35.4
TWI36G0905 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 8.6e-72 275.8 488 41.2
CiPaw.08G163000 Carya illinoinensis HOM05D003060 ORTHO05D001716 1.1e-71 275.4 465 41.5
Sed0012843 Sechium edule HOM05D003060 ORTHO05D001716 1.5e-71 275.0 565 39.5
TWI12G1080 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 1.9e-71 274.6 481 40.3
Potri.005G026800 Populus trichocarpa HOM05D003060 ORTHO05D001716 2.8e-70 270.8 832 32.8
Eucgr.H04503 Eucalyptus grandis HOM05D003060 ORTHO05D001716 6.1e-70 269.6 748 34.6
MELO3C004230.2 Cucumis melo HOM05D003060 ORTHO05D001716 8.0e-70 269.2 513 39.2
CsaV3_2G006550 Cucumis sativus L. HOM05D003060 ORTHO05D001716 1.0e-69 268.9 511 37.8
Gohir.A05G272000 Gossypium hirsutum HOM05D003060 ORTHO05D001716 1.0e-69 268.9 654 34.6
CANSAT54G0820 Cannabis sativa HOM05D003060 ORTHO05D001716 3.0e-69 267.3 475 40.8
TWI56G0319 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 6.8e-69 266.2 475 40.2
Lj5g0001145 Lotus japonicus HOM05D003060 ORTHO05D001716 7.5e-68 262.7 532 38.0
Lj1g0012568 Lotus japonicus HOM05D003060 ORTHO05D001716 1.1e-66 258.8 523 37.5
VMungo0540G1887 Vigna mungo HOM05D003060 ORTHO05D001716 4.1e-66 256.9 489 39.9
Phvul.006G090511 Phaseolus vulgaris HOM05D003060 ORTHO05D001716 7.0e-66 256.1 514 37.4
Cpa.g.sc48.79 Carica papaya HOM05D003060 ORTHO05D001716 5.9e-65 253.1 503 39.6
RcHm_v2.0_Chr3g0455351 Rosa chinensis HOM05D003060 ORTHO05D001716 5.9e-65 253.1 563 38.4
Phvul.006G090600 Phaseolus vulgaris HOM05D003060 ORTHO05D001716 7.8e-65 252.7 516 37.6
TPR.G33216 Trifolium pratense HOM05D003060 ORTHO05D001716 7.8e-65 252.7 541 36.6
VMungo0540G0889 Vigna mungo HOM05D003060 ORTHO05D001716 2.3e-64 251.1 470 39.4
Medtr7g113180 Medicago truncatula HOM05D003060 ORTHO05D001716 5.0e-64 250.0 544 37.1
Sabra13G0021300 Salix brachista HOM05D003060 ORTHO05D001716 5.0e-64 250.0 486 39.7
Actinidia19785 Actinidia chinensis HOM05D003060 ORTHO05D001716 1.5e-63 248.4 548 37.4
Psat0s545g0040 Pisum sativum HOM05D003060 ORTHO05D001716 3.3e-63 247.3 557 35.9
FAN02G1847 Fragaria x ananassa HOM05D003060 ORTHO05D001716 4.3e-63 246.9 496 38.9
FAN09G4310 Fragaria x ananassa HOM05D003060 ORTHO05D001716 4.3e-63 246.9 492 38.8
Peaxi162Scf00037g00924 Petunia axillaris HOM05D003060 ORTHO05D001716 5.6e-63 246.5 466 37.1
Ca_05807_v3 Cicer arietinum L. HOM05D003060 ORTHO05D001716 1.6e-62 245.0 567 35.8
FAN05G5493 Fragaria x ananassa HOM05D003060 ORTHO05D001716 2.1e-62 244.6 495 38.8
ClCG02G015530 Citrullus lanatus HOM05D003060 ORTHO05D001716 4.7e-62 243.4 511 37.0
FvH4_6g06310 Fragaria vesca HOM05D003060 ORTHO05D001716 1.8e-61 241.5 541 36.8
Actinidia24646 Actinidia chinensis HOM05D003060 ORTHO05D001716 4.0e-61 240.4 499 38.1
FAN14G2973 Fragaria x ananassa HOM05D003060 ORTHO05D001716 5.2e-61 240.0 541 36.6
Nitab4.5_0004754g0020 Nicotiana tabacum HOM05D003060 ORTHO05D001716 5.2e-61 240.0 481 36.0
Lalb_Chr18g0045701 Lupinus albus HOM05D003060 ORTHO05D001716 6.8e-61 239.6 529 36.7
TAR633G1311 Trochodendron aralioides HOM05D003060 ORTHO05D001716 6.8e-61 239.6 510 38.0
Hma1.2p1_1212F.1_g267400 Hydrangea macrophylla HOM05D003060 ORTHO05D001716 8.9e-61 239.2 509 37.3
Nn3g21411 Nelumbo nucifera HOM05D003060 ORTHO05D001716 8.9e-61 239.2 483 38.1
Lalb_Chr15g0077301 Lupinus albus HOM05D003060 ORTHO05D001716 1.2e-60 238.8 522 36.4
Thhalv10003560m.g Eutrema salsugineum HOM05D003060 ORTHO05D001716 2.0e-60 238.0 718 32.7
Aqoxy2G03022 Aquilegia oxysepala HOM05D003060 ORTHO05D001716 3.4e-60 237.3 743 32.0
MD12G1216400 Malus domestica HOM05D003060 ORTHO05D001716 1.3e-59 235.3 497 37.8
PGR031G3073 Punica granatum HOM05D003060 ORTHO05D001716 1.3e-59 235.3 731 29.8
TAR362G0619 Trochodendron aralioides HOM05D003060 ORTHO05D001716 2.9e-59 234.2 462 38.5
Nitab4.5_0002344g0090 Nicotiana tabacum HOM05D003060 ORTHO05D001716 3.2e-58 230.7 693 30.4
Prupe.6G322700 Prunus persica HOM05D003060 ORTHO05D001716 7.0e-58 229.6 498 38.0
PGSC0003DMG402024702 Solanum tuberosum HOM05D003060 ORTHO05D001716 3.5e-57 227.3 483 35.6
AT5G27650 Arabidopsis thaliana HOM05D003060 ORTHO05D001716 4.6e-57 226.9 727 31.2
BraA09t36175Z Brassica rapa HOM05D003060 ORTHO05D001716 4.6e-57 226.9 704 31.2
THA.LOC104802799 Tarenaya hassleriana HOM05D003060 ORTHO05D001716 8.6e-56 222.6 597 33.8
DCAR_003342 Daucus carota HOM05D003060 ORTHO05D001716 1.1e-55 222.2 471 37.6
HanXRQChr11g0339461 Helianthus annuus HOM05D003060 ORTHO05D001716 1.1e-55 222.2 482 35.1
Sp2g20810 Schrenkiella parvula HOM05D003060 ORTHO05D001716 1.1e-55 222.2 695 32.1
ECA132G0003 Erigeron canadensis HOM05D003060 ORTHO05D001716 2.5e-55 221.1 514 34.6
TAR636G0574 Trochodendron aralioides HOM05D003060 ORTHO05D001716 3.3e-55 220.7 478 36.2
Cc00_g10500 Coffea canephora HOM05D003060 ORTHO05D001716 4.3e-55 220.3 708 31.9
Actinidia19783 Actinidia chinensis HOM05D003060 ORTHO05D001716 7.3e-55 219.5 366 41.5
C09p05850 Brassica napus HOM05D003060 ORTHO05D001716 7.3e-55 219.5 700 30.9
BolC9t53512H Brassica oleracea HOM05D003060 ORTHO05D001716 7.3e-55 219.5 700 30.9
AL6G39380 Arabidopsis lyrata HOM05D003060 ORTHO05D001716 9.5e-55 219.2 727 30.4
A09p05370 Brassica napus HOM05D003060 ORTHO05D001716 2.8e-54 217.6 701 30.2
GSVIVG01031118001 Vitis vinifera HOM05D003060 ORTHO05D001716 4.7e-54 216.9 675 33.0
BcaB04g19679 Brassica carinata HOM05D003060 ORTHO05D001716 6.2e-54 216.5 724 30.2
Sopen01g042920 Solanum pennellii HOM05D003060 ORTHO05D001716 8.1e-54 216.1 464 36.0
Solyc01g099360.3 Solanum lycopersicum HOM05D003060 ORTHO05D001716 1.1e-53 215.7 466 36.3
MBI19_g13125_MAGBIO Magnolia biondii HOM05D003060 ORTHO05D001716 1.4e-53 215.3 557 34.6
Dinv40310 Davidia involucrata HOM05D003060 ORTHO05D001716 2.6e-52 211.1 301 44.9
Sc09g0003030 Simmondsia chinensis HOM05D003060 ORTHO05D001716 4.4e-52 210.3 468 37.2
SalBow3G3371 Salvia bowleyana HOM05D003060 ORTHO05D001716 7.5e-52 209.5 535 32.7
CARHR186170 Cardamine hirsuta HOM05D003060 ORTHO05D001716 1.1e-50 205.7 706 30.9
Hund21701 Selenicereus undatus HOM05D003060 ORTHO05D001716 1.4e-50 205.3 511 35.2
Carub.0006s2494 Capsella rubella HOM05D003060 ORTHO05D001716 1.9e-50 204.9 715 30.8
vmacro19622 Vaccinium macrocarpon HOM05D003060 ORTHO05D001716 3.2e-50 204.1 489 36.8
Aa31LG11G9390 Aethionema arabicum HOM05D003060 ORTHO05D001716 1.2e-49 202.2 726 30.0
DCAR_022153 Daucus carota HOM05D003060 ORTHO05D001716 3.5e-49 200.7 554 33.0
Rhsim05G0141600 Rhododendron simsii HOM05D003060 ORTHO05D001716 7.8e-49 199.5 482 36.7
DCAR_001942 Daucus carota HOM05D003060 ORTHO05D001716 1.0e-48 199.1 525 32.6
CDE02G1047 Ceratophyllum demersum HOM05D003060 ORTHO05D001716 1.7e-48 198.4 473 36.8
CDE08G1209 Ceratophyllum demersum HOM05D003060 ORTHO05D001716 1.7e-48 198.4 464 37.1
MSTRG.27986 Avicennia marina HOM05D003060 ORTHO05D001716 3.9e-48 197.2 541 32.7
Sc16g0008560 Simmondsia chinensis HOM05D003060 ORTHO05D001716 3.9e-48 197.2 456 36.4
vmacro04969 Vaccinium macrocarpon HOM05D003060 ORTHO05D001716 1.1e-47 195.7 499 34.5
Medtr1g083170 Medicago truncatula HOM05D003060 ORTHO05D001716 3.3e-47 194.1 496 33.9
PSO782G3442 Papaver somniferum HOM05D003060 ORTHO05D001716 9.5e-47 192.6 464 35.1
HPP92_016933 Vanilla planifolia HOM05D003060 ORTHO05D001716 1.6e-46 191.8 441 36.1
Carub.0003s0471 Capsella rubella HOM05D003060 ORTHO05D001716 3.6e-46 190.7 703 29.6
PSO063G5863 Papaver somniferum HOM05D003060 ORTHO05D001716 6.2e-46 189.9 464 34.5
Migut.N01988 Erythranthe guttata HOM05D003060 ORTHO05D001716 1.4e-45 188.7 696 27.6
AUR62000787 Chenopodium quinoa HOM05D003060 ORTHO05D001716 4.0e-45 187.2 500 33.6
Rhsim07G0186300 Rhododendron simsii HOM05D003060 ORTHO05D001716 2.0e-44 184.9 405 37.3
Oeu010912.1 Olea europaea HOM05D003060 ORTHO05D001716 2.6e-44 184.5 667 28.3
AUR62005180 Chenopodium quinoa HOM05D003060 ORTHO05D001716 3.4e-44 184.1 499 33.3
MSTRG.20426 Avicennia marina HOM05D003060 ORTHO05D001716 2.9e-43 181.0 715 28.5
Ah.06g189640 Amaranthus hybridus HOM05D003060 ORTHO05D001716 2.4e-42 177.9 725 31.7
AL3G15990 Arabidopsis lyrata HOM05D003060 ORTHO05D001716 2.4e-42 177.9 697 29.8
CARHR079770 Cardamine hirsuta HOM05D003060 ORTHO05D001716 2.4e-42 177.9 439 33.5
Thhalv10019994m.g Eutrema salsugineum HOM05D003060 ORTHO05D001716 1.2e-41 175.6 690 28.8
EL10Ac4g09376 Beta vulgaris HOM05D003060 ORTHO05D001716 2.7e-41 174.5 473 34.2
Sed0010373 Sechium edule HOM05D003060 ORTHO05D001716 2.7e-41 174.5 402 36.6
SGA_v2.0_scaffold98G29313 Striga asiatica HOM05D003060 ORTHO05D001716 2.7e-41 174.5 444 33.1
Oeu012112.1 Olea europaea HOM05D003060 ORTHO05D001716 7.8e-41 172.9 666 30.8
SGA_v2.0_scaffold80G25802 Striga asiatica HOM05D003060 ORTHO05D001716 2.3e-40 171.4 466 31.5
unitig_746.g26861 Utricularia gibba HOM05D003060 ORTHO05D001716 2.3e-40 171.4 464 32.3
HanXRQChr14g0433331 Helianthus annuus HOM05D003060 ORTHO05D001716 3.0e-40 171.0 458 33.4
Lj9C129G1 Lonicera japonica HOM05D003060 ORTHO05D001716 3.9e-40 170.6 745 29.4
Lj9A123G17 Lonicera japonica HOM05D003060 ORTHO05D001716 5.1e-40 170.2 695 30.2
AT3G05430 Arabidopsis thaliana HOM05D003060 ORTHO05D001716 8.6e-40 169.5 699 28.0
SalBow7G2475 Salvia bowleyana HOM05D003060 ORTHO05D001716 1.9e-39 168.3 458 32.1
Dinv44390 Davidia involucrata HOM05D003060 ORTHO05D001716 1.5e-36 158.7 384 34.6
Aa31LG5G15950 Aethionema arabicum HOM05D003060 ORTHO05D001716 9.9e-36 156.0 306 39.5
unitig_749.g13558 Utricularia gibba HOM05D003060 ORTHO05D001716 1.7e-35 155.2 464 31.5
Haze_01221 Corylus avellana HOM05D003060 ORTHO05D001716 3.8e-35 154.1 503 30.6
unitig_899.g15593 Utricularia gibba HOM05D003060 ORTHO05D001716 3.2e-34 151.0 364 36.3
Psat6g150200 Pisum sativum HOM05D003060 ORTHO05D001716 1.6e-33 148.7 332 36.7
QL06p008666 Quercus lobata HOM05D003060 ORTHO05D001716 6.0e-33 146.7 452 31.6
Zm00001eb418070 Zea mays HOM05D003060 ORTHO05D001716 7.8e-33 146.4 401 33.9
COL.COLO4_13891 Corchorus olitorius HOM05D003060 ORTHO05D001716 2.1e-30 138.3 395 32.2
Lsat_1_v5_gn_9_87441 Lactuca sativa HOM05D003060 ORTHO05D001716 5.8e-28 130.2 466 30.9
ATR0706G064 Amborella trichopoda HOM05D003060 ORTHO05D001716 1.7e-27 128.6 475 31.8
Actinidia40263 Actinidia chinensis HOM05D003060 ORTHO05D001716 4.2e-26 124.0 208 44.2
Lsat_1_v5_gn_9_87360 Lactuca sativa HOM05D003060 ORTHO05D001716 4.2e-26 124.0 452 29.9
CSS0018788 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 4.6e-25 120.6 373 31.4
CSS0023784 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 1.0e-24 119.4 373 31.4
CSS0019912 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 1.8e-24 118.6 375 30.7
CSS0035849 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 1.1e-23 115.9 370 30.5
Atru.chr4.2820 Acer truncatum HOM05D003060 ORTHO05D001716 7.4e-23 113.2 265 35.8
SEGI_28746 Sequoiadendron giganteum HOM05D003060 ORTHO05D001716 9.6e-23 112.8 514 27.2
Zm00001eb354250 Zea mays HOM05D003060 ORTHO05D001716 1.6e-22 112.1 311 34.4
Atru.chr4.2818 Acer truncatum HOM05D003060 ORTHO05D001716 2.6e-20 104.8 326 30.7
Dinv05099 Davidia involucrata HOM05D003060 ORTHO05D001716 1.6e-17 95.5 227 33.9
SEGI_40933 Sequoiadendron giganteum HOM05D003060 ORTHO05D001716 1.0e-16 92.8 501 27.3
TWI09G1399 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 1.1e-15 89.4 341 29.6
Ciclev10006926m.g Citrus clementina HOM05D003060 ORTHO05D001716 4.3e-15 87.4 437 27.5
CSS0034622 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 7.4e-15 86.7 346 28.3
TWI09G0082 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 4.8e-14 84.0 224 33.0
Cc00_g10560 Coffea canephora HOM05D003060 ORTHO05D001716 4.0e-13 80.9 134 36.6
Migut.N00095 Erythranthe guttata HOM05D003060 ORTHO05D001716 1.5e-12 79.0 155 34.2
Lsat_1_v5_gn_3_26180 Lactuca sativa HOM05D003060 ORTHO05D001716 1.5e-12 79.0 139 36.7
Solyc01g067040.2 Solanum lycopersicum HOM05D003060 ORTHO05D001716 2.0e-12 78.6 72 45.8
vmacro08136 Vaccinium macrocarpon HOM05D003060 ORTHO05D001716 2.6e-12 78.2 116 40.5
Sopen01g028750 Solanum pennellii HOM05D003060 ORTHO05D001716 4.5e-12 77.4 140 31.4
Nn7g37150 Nelumbo nucifera HOM05D009639 ORTHO05D010690 7.6e-12 76.6 265 27.9
PGSC0003DMG400022663 Solanum tuberosum HOM05D003060 ORTHO05D001716 1.3e-11 75.9 147 33.3
CAN.G820.4 Capsicum annuum HOM05D003060 ORTHO05D001716 1.7e-11 75.5 178 34.3
SEGI_14874 Sequoiadendron giganteum HOM05D000855 ORTHO05D001716 1.7e-11 75.5 278 32.7
Lj6A674G26 Lonicera japonica HOM05D003060 ORTHO05D001716 8.4e-11 73.2 206 32.0
Dinv30789 Davidia involucrata HOM05D003060 ORTHO05D001716 3.5e-09 67.8 156 34.0
Atru.chr12.1203 Acer truncatum HOM05D009639 ORTHO05D006184 5.1e-08 63.9 114 36.0
Actinidia27048 Actinidia chinensis HOM05D003060 ORTHO05D001716 5.1e-08 63.9 190 31.1
Actinidia36701 Actinidia chinensis HOM05D003060 ORTHO05D001716 1.1e-07 62.8 104 36.5
Ca_25852_v3 Cicer arietinum L. HOM05D009639 ORTHO05D010690 1.1e-07 62.8 71 42.3
QL04p023061 Quercus lobata HOM05D009639 ORTHO05D010690 1.5e-07 62.4 76 42.1
CAN.G995.6 Capsicum annuum HOM05D003060 ORTHO05D034007 5.7e-07 60.5 183 29.5
DCAR_004182 Daucus carota HOM05D000022 ORTHO05D000071 7.4e-07 60.1 144 31.2
Atru.chr1.1341 Acer truncatum HOM05D003060 ORTHO05D001716 1.3e-06 59.3 86 40.7
Glyma.04G124900 Glycine max HOM05D009639 ORTHO05D010690 1.3e-06 59.3 74 40.5
Ciclev10002267m.g Citrus clementina HOM05D009639 ORTHO05D010690 2.1e-06 58.5 121 32.2
CAN.G995.7 Capsicum annuum HOM05D003060 ORTHO05D001716 3.7e-06 57.8 201 29.9
Atru.chr12.1201 Acer truncatum HOM05D009639 ORTHO05D010690 4.8e-06 57.4 100 36.0
HPP92_026258 Vanilla planifolia HOM05D003060 ORTHO05D001716 4.8e-06 57.4 87 42.5
SEGI_06466 Sequoiadendron giganteum HOM05D000855 ORTHO05D002321 6.3e-06 57.0 254 28.3


User provided reference genes

Program Settings