Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 6.0e-184 647.5 360 100.0
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 4.3e-49 199.5 247 49.8
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 1.8e-47 194.1 248 48.8
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 3.1e-47 193.4 256 48.4
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 4.1e-47 193.0 236 48.7
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 5.3e-47 192.6 247 46.2
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 1.2e-46 191.4 236 50.0
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 1.5e-46 191.0 248 51.6
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 2.0e-46 190.7 231 48.9
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 2.6e-46 190.3 236 48.7
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 4.5e-46 189.5 248 47.2
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.0e-45 188.3 235 47.2
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.7e-45 187.6 238 48.7
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 2.2e-45 187.2 199 55.8
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 3.8e-45 186.4 237 48.9
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 3.8e-45 186.4 236 47.0
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 3.8e-45 186.4 244 47.1
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 6.5e-45 185.7 247 47.0
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 6.5e-45 185.7 243 49.8
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 1.1e-44 184.9 236 47.0
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 1.4e-44 184.5 241 47.7
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 1.9e-44 184.1 234 47.0
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.9e-44 184.1 236 47.9
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 1.9e-44 184.1 198 54.5
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 2.5e-44 183.7 237 48.1
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 5.5e-44 182.6 236 48.3
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 5.5e-44 182.6 240 47.5
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 7.2e-44 182.2 247 49.4
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 7.2e-44 182.2 249 45.8
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 9.3e-44 181.8 238 47.5
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 1.6e-43 181.0 216 49.5
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 2.1e-43 180.6 221 49.8
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 2.7e-43 180.3 274 44.9
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 2.7e-43 180.3 238 46.2
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 3.5e-43 179.9 280 43.6
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 4.6e-43 179.5 238 47.9
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 6.1e-43 179.1 260 46.2
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 6.1e-43 179.1 260 46.2
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 7.9e-43 178.7 228 48.2
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 1.0e-42 178.3 260 46.2
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 1.0e-42 178.3 211 50.7
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.3e-42 177.9 236 47.5
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.3e-42 177.9 202 51.0
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 1.8e-42 177.6 202 51.0
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 2.3e-42 177.2 194 52.6
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.0e-42 176.8 266 46.2
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 3.0e-42 176.8 270 45.6
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 3.9e-42 176.4 235 48.5
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 6.7e-42 175.6 239 46.9
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 6.7e-42 175.6 217 46.5
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 6.7e-42 175.6 238 47.5
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 6.7e-42 175.6 271 46.5
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 6.7e-42 175.6 198 50.0
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 1.1e-41 174.9 240 46.7
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 1.1e-41 174.9 249 45.4
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 3.3e-41 173.3 265 45.7
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 4.3e-41 172.9 210 49.0
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 4.3e-41 172.9 249 45.4
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 5.7e-41 172.6 253 45.8
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 7.4e-41 172.2 249 46.2
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.3e-40 171.4 270 44.4
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 1.6e-40 171.0 247 44.9
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 2.8e-40 170.2 265 43.0
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 2.8e-40 170.2 237 47.7
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 3.7e-40 169.9 234 44.9
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 6.3e-40 169.1 272 42.6
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 1.1e-39 168.3 268 42.2
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 1.8e-39 167.5 273 42.9
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 1.8e-39 167.5 134 67.2
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 4.1e-39 166.4 202 47.5
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 1.5e-38 164.5 209 48.8
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.5e-38 164.5 211 47.9
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 1.5e-38 164.5 246 44.3
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 5.9e-38 162.5 235 46.8
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 5.9e-38 162.5 226 46.0
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.0e-37 161.8 253 40.7
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 6.5e-37 159.1 247 43.3
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 8.5e-37 158.7 256 40.2
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 1.1e-36 158.3 232 43.5
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.1e-36 158.3 183 48.1
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 2.5e-36 157.1 248 41.9
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 4.2e-36 156.4 239 43.5
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 9.4e-36 155.2 242 43.8
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 1.6e-35 154.5 257 42.0
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 2.1e-35 154.1 251 45.0
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 2.1e-35 154.1 254 41.3
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 3.6e-35 153.3 239 42.7
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 3.6e-35 153.3 239 42.7
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 3.6e-35 153.3 238 42.9
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 4.6e-35 152.9 254 40.6
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 4.6e-35 152.9 196 47.4
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 7.9e-35 152.1 215 44.7
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 7.9e-35 152.1 236 41.5
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 1.4e-34 151.4 181 51.4
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.8e-34 151.0 268 38.1
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 2.3e-34 150.6 247 41.3
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 2.3e-34 150.6 231 44.6
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 6.7e-34 149.1 239 42.7
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 6.7e-34 149.1 221 43.4
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 6.7e-34 149.1 186 47.8
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 8.8e-34 148.7 161 51.6
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 1.1e-33 148.3 173 48.6
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 1.5e-33 147.9 221 43.0
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 1.5e-33 147.9 221 43.0
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 2.0e-33 147.5 241 42.7
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 2.0e-33 147.5 221 43.0
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 2.0e-33 147.5 197 47.7
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 2.5e-33 147.1 235 43.4
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 4.3e-33 146.4 238 42.4
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 9.7e-33 145.2 204 46.1
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.3e-32 144.8 263 39.2
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 1.7e-32 144.4 248 41.1
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.8e-31 141.0 239 40.2
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 2.4e-31 140.6 185 46.5
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 4.1e-31 139.8 187 46.0
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 1.3e-29 134.8 179 45.8
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 1.3e-29 134.8 161 49.1
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 3.8e-29 133.3 139 54.7
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 5.0e-29 132.9 200 42.5
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 3.2e-28 130.2 159 50.3
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 7.9e-27 125.6 140 50.7
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 3.0e-26 123.6 163 46.6
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 8.8e-26 122.1 147 49.0
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 4.8e-24 116.3 175 44.6
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 9.1e-23 112.1 251 36.3
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 1.6e-22 111.3 152 44.7
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 2.6e-22 110.5 104 55.8
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 3.5e-22 110.2 134 47.0
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 5.0e-21 106.3 132 47.0
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 5.0e-21 106.3 147 45.6
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 8.5e-21 105.5 192 39.6
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 3.2e-20 103.6 257 32.7
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 4.8e-16 89.7 190 35.3
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 9.1e-15 85.5 74 58.1
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 9.1e-15 85.5 175 38.3
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 2.0e-14 84.3 166 35.5
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 4.5e-14 83.2 216 29.2
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 5.9e-14 82.8 96 49.0
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 7.7e-14 82.4 107 45.8
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 4.4e-09 66.6 62 56.5
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 7.5e-09 65.9 104 42.3
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 3.1e-07 60.5 158 30.4
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 9.1e-07 58.9 107 41.1
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 4.5e-06 56.6 123 33.3


User provided reference genes

Program Settings